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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006965 ID=TCONS_00006965|Name=TCONS_00006965|organism=Clytia hemisphaerica|type=transcript|length=1670bp
CAACAAATAACGATCAAAGacGAGGGAGACTTTGAATACAGTGGAAAAGA
CATTTGTACTCGTGATAACCCTATCCAATATTACCAGCCTACCGTCAAGA
TCAGTTACAGCCAAGGGACTGATTGGAATAAGCGAGGCGTTGTTGTCGGA
TGGGTCGCTTTCAAAGACCCTTATTACActGATGTTGGAGCAATTGGAGG
ATACATTGCTGCAGGGATTTTGGTTCCCATATTCATACTTTGTATCATCG
TGTGCGCATGCTTGAAACAAAAACGAGGCTACGTGTTCAGCCAAAGAGCT
GCCGGATTTAACAACATGCCGCAAGGCAATAACGTGACTGTCGTCAATAA
CCAAACTTCAACGgCTCAACAACAATATGTTCCACCGCCCCAACAAGGAT
ATCCAGCACAACAACCAGCTTACCCACCACCCCAACAGGGCGCTTACCCG
CCGCCCCAACAAGGTGCTTATCCAAACCAAGGTTACGCCCCACAAACACA
ACCTGGAGCTTATCCTCAACCAGGGGCATATCCGCCGCCCCAGCAAGGAT
ATCCGCCCGTCTCTCAACACGGATACGCTCCACCGCCCGTTTATCAAGAA
TCTGCAACGCCCCAACCACAACCACCAGTCCAATAAAGTCATTGCTTAAA
ACCTCAATGAAAGAAACGCACTATTTGGCGATAATTAAGCTTTGTATTCC
TGTTGTTGTAAAAAGACACATTTTACCtgtaaaacttttttcacatgcac
gtaaaattttactttagaccttacggaaaatcgttcgtaaggctgtcttt
tgggaatttcctcGTAACTATGTAGAGTTTTTgttctaccactgcactac
ggtcgcttggAAAGTGGTTGACGGCGGCAGTACCGCAAACCAGAGGTTTC
TGGTTCGAATTTCCGTTGCGCCGTGTGACCTTGGATAATTCGAATCTgtt
tataattcgaactaaatccTTGGTCCTCTGAGATTTAAAATCGTCATAAT
ACtcataatttgaatctttcCCTAATTCAAAGGAAATTCCCTTAAGTGAA
actttacgtacatgtgaaaaaagctaaaacatCACTAACCCGATTGACTA
TAGAATTTCAAAACGATTTCTTTCTGTTCTCTTCTGTTGTTTATAATGGG
CACAATACTATGAAGTTTGTGTTGGGTGCTCCTATAGTTCTTTTATAGAT
TTAGGATTGTAATTTTAATGATATCATTTATTTTAggatttataatattt
tttgatgatttttagatCTGCACTTCATATGCATATACATTTTAAATTCG
ATATATAttgcttttatttttgataatttttttaaaatggaTATTAAATA
TTTGATCTAGAATATGTccatatacacgctttttttataagaacaatttt
ataagaacacgaggctgaaaattgaccaaaacctaagaacaaattaagaa
taatgcgaGCGTCAGATTTCGAAGATACTAAGAAAGTACTGATTCTAAAC
CTATTTTTAAGAACATCATACAGAACATTTAGgccttgaaatttcaaaaa
attcagaaCAGCTCAGCtcgagccaaaatttactgtttcttataaaaaaa
acttgtatccATGTTTGTCTACGTTTGTCTGTTTGTTGtgtctaaataaa
aaaatgtttaaataaTGCTG Run BLAST on NCBI transcript from alignment at sc0000072:613794..620287- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006965 ID=TCONS_00006965|Name=TCONS_00006965|organism=Clytia hemisphaerica|type=transcript|length=6494bp|location=Sequence derived from alignment at sc0000072:613794..620287- (Clytia hemisphaerica)
CAACAAATAACGATCAAAGGTAAGTTTATCATACAAAACTCTGTTAAGTG
TGTTTCAATCTTAAATTTTTTCAGAAATCATATAAAATTAAAACACCAAA
AGATGGAATACATTCTAAAACCCCATCAAAATTTATGAAACTATAATAAA
AACATGAAAATACCTCCTAAGTTAGAAAAATTTTGCTGCCAACTCGAGCA
AAGCCAAAAAATGGAGTCTGCTAAATTACACCGGTTCATATATCAGCGCC
ATCCAGTCTATCAAAATGCTGTATAAGTGGCTCCCGTGCTAGGATATACC
TGATTGGGTTTGATATAATGGGGTTAACTGCAGTTGGGGCGTCCCGAAGG
TAGGTACTATGCACCCTGGATTACTCCACTTGCCTTTGACCATTCTATTT
CATTTATGCCGTGGAGGCATCAAGTACATTGGTATGATCGGGCTAGGAAT
TGAACCCACGAATTTGTGCACTCTACCTTTACACTTAGCTTCGCTTGACC
AATAACAATTCATGATATGCACCATTGCAATGTCTTCTGAAATTACATCA
CGGATCCAATAGCTGATTGGTTGTAAGTGACGTACAATTAGTCATTACGT
CACTTTGAACCAATCAGCTTTTAAATGCGTGGAAGACATTGCAATGATGC
ATATCATGAATAGTCAGCATAAAATCGACTACAAAAAGTCAATGCGATTC
TTTGTTTTGATACTAATGTAGTGACTTCTTTTCAACTTTTTCCTGCGTGT
TTGAATTATGAACACTCCACTGTACTATCAATAAAATTTTGATATGGAAA
ATTAAAATGTTATATTCTGTGAAGGTAGAACACCCGCCCCATGGTGCGTA
AGGTGGTCCAGCCCGAGTCAAACCAAAGCTCCTCTAATCGTACTTGATGC
TTTTGCTTGGTGCTCAGTTACTTAAGTAAACTTTCCAGGGAAAGTAATGG
CTTCTCCCTCTAACTTTGGAAAGACTTCTTGCTATTTAGTAATCATTCTT
CATCGAAGAGGTCTCCCTACGGGAATTTTTTTATAAAACAGACAATGTGC
ACATGGTGTACAGTACAACGAAACGATGAACCTCGACTGCGGTCACACCT
TTGATAACTTAACATTCATCTTCTGGTCAGGCCTTAGAACATCTCCTAAT
CACTCATTTTTGCTTTCACCGCGTTTACTCTGCCAAGCCAAACGCGGTGA
CTCAAATCTCCTTTATAAGATATTTTACTTTTTTTCAGACGAGGGAGACT
TTGAATACAGTGGAAAAGACATTTGTACTCGTGATAACCCTATCCAATAT
TACCAGCCTACCGTCAAGATCAGTTACAGCCAAGGGACTGATTGGAATAA
GCGAGGCGTTGTTGTCGGATGGGTCGCTTTCAAAGACCCTTATTACAGTA
AGTTAAACTATACGTTTGTTGTTTTACAAGAATAAACTATATAAGAACAT
AAGGCTTCTATGGCCAAAATGTTAAGAATACGCTAAGAGCATTTTAAGGC
TTCGCGGACTCTAAAACACCCGATTTCTTAAAAATTGGGCAAAATTACTC
AAAAAATGGCCAGAATAAGAACATGTTAAGAATATTCATATCCTTAAAAC
TCAAAAAGTTAAGAACATCCGAAGGCTTCAAAAAATTTGGATGTTCTTAT
AAAAAAACGTGTATATTTCGATTCGGAGAAAATTTGGGTATGTTTCTTTA
TGTGATAAATTGTTATTGATTTTCGTAGAGAATATCTGCTGGGAGGGGCC
TGGGGTTGTCTGGTAGGTTGGAGAGTAAGTAAGACTGCGACCGCAATCGG
AGGCGACTCGAAGACTCCTCTTTTGATAGCTATCTACCCGAAGGTAAGGC
AGGGCCAGGGGGGAGGGGTACGCTTTCTCCCTGGATTACTCCACTTACCC
TTGATCTTCGCTTAATTGCTGAGCATTAAACAGAGAGGCATCAAATACCA
TGAAGGGGATATGACCCGGCTGGGGGTCGAACCCACAACCTTGTGCACCG
TAGCCGGATGCTCTACCACTGCACTACGGTCGCTTGGAAAGTGGTTGACG
GCGGCAGAACCGCAAACCAGAGGTTTCTGGTTCGAATTTCTGTTGCGCCG
TGTGACCTTGGATAATTTGAATCTGTTTATAATGCGAACTAAAGCATTGG
TCCTCTGAGATTTAAAACCGTCATAGGCTGCGTTTAGACCAACTGGCATT
TGTAATTTGGCATTTGCTCATGAGGGATTCGATTTTAATAGCTTTTCCAT
TGTATTTTCTGTCATGGCATTTAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGAAATGCC
AGAAAAGGGGATTCCTTTGCTCAAAATGGCATTTCAAATGCCAACGTAAT
GCCAACACGCTGGCATCATTAGGCATTTGATAAACCGAACAATTGCGCGG
AATAATAGAATTCAAAAGAATACTGCAAGCAATTACAAATGCCAGGCTGG
TCTAAACGCAGCTATAATACTCATAATTTGAATCTTTCTCTAATTCAAAG
GAAATCAGATCCAATAGACCTTTTCATAAATTACGTCAGAAACATCACTT
GCCTCGTATCCAAACAATTACCATGGTCATTATGTCTCTTGAGACATTTA
ATGATTTTTTTTATGAAGAGGAAGTAGTTTTGATAAAATCCGCTGGGAGT
TAATCACTATGGCAATAATTTCAAAACGAGGTAAGTGATGTTCGTAACGG
AATTTATGTAGGTCTATTAGAGAAATCATTTATAAAATTTCAAAATTTTC
AGCTGATGTTGGAGCAATTGGAGGATACATTGCTGCAGGGATTTTGGTTC
CCATATTCATACTTTGTATCATCGTGTGCGCATGCTTGAAACAAAAACGA
GGCTACGTGTTCAGCCAAAGAGCTGCCGGATTTAACAACATGCCGCAAGG
CAATAACGTGACTGTCGTCAATAACCAAACTTCAACGGGTAAAATTTTAT
TATCTAGCACCTCACCAAAAAACTGGGATTTTTTATTTGGTTTCTTGGTG
ATTTCTATTTTGATGATTTTTCGAAAAATAGATGTTTTTTCAAGTGTTCT
AACTATGGCGTTCTAAATCTTTTTCAAAATGACTTCAAGATTTAAAACGC
CATGGTTCTTACCCTGAGTATCAGAGGTTAAGTTTTCAAAGAATATATTA
ACCTCTGAAGACCAATAATAGAAATTTTATCGCGCATGTGTCAATCTAAT
CACTGTAGAACGAATCAAAGATGGAGAGCAAATATTACCTTATTAATGTC
TAGCAGACTGTATCAGTATGCAGTTTACTATTTAAGAATTCCCCAGAAAC
CTCCAAGTGTAATTGAAGTGAGTTTCTTTCGAAAGAAATTTTTTACATGA
TCCCCAAATGTATAACAGTTATTACTAAACTACTAATTATGGAAATGTCA
CTTTTAATTGAATCGAAATAATAGACAGGCTTTATGTTATGATTCTCTAT
CACTGACTCTTTTTAAAAAGCATTGATGATATTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGATATCAACTTTGAA
CTTCATCCAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTCGTTGA
TTGCGCGATGAATAGAATCTCGATTCGTCGTCACAGCGTCAATATATGAT
TTTGACCTGTGCTTTTCACGGTACATGGTTCTGACTCTAATTCGATTTTT
TCACTACTGCAGGAGCTTCAAAAGTTAGAAATGACGTTAAAAATCGAATG
TTTGGAGCCCAAAAATCTGAGCTCAAAACATTCGAAAAAGTCGCAAAGTG
GAATAGACGATACTGCGTAGAAAAAGCCGTAACATCTAGTATAGGCTAAC
TTATTTTTTGCATTTTCTGGAAAATCTTTTAATCCCCCGTGTTGGGGAAG
ACATTTTCTGCCCAGTAAGTTGAGGGGTTAGCTCAAAAGCACGACCATCC
AGGTGTGTTAGTGAAAGTCCAGGGGGCTTTTTAGAATTTAGCGGTGAAAA
TACAAGAAAAGGTCACTTTTTGTTGCTTTCTAAAACCCTTTTATCTCTCT
GTGTTTTCAGTAATTCCTTTGTCCATCAGGTTACCGCAAACTTACCATAA
ATTTTCTTCTTCAAACTCAAAATACAAAAAAAGTCAAAATGCATTTCCAG
GAATGCCAGCATTTCTCTGGACAAATACAATATTTTTCTAAATGTTCAGA
GCTCCAGATCGAGCCAATGAATCAAAATTTCGGAATTACAAAATTTAACA
TTAATCTGGAAAACACAGTGTTTTAAGAAATTCAACTAAACGGAATTAAC
TGAACCCTAAGACATTTCCATGAAACAATGTAAAACTTCTGATTTTTCGA
CATGATCTAGGCTCTTAGAATTTCTAAGCAAGTCTCAAGATTTGATCATT
TAGATCTTGTTAGTAATAAAAATTACTTCGCGCGGCTAAAACAGGCTGAA
GTAGCTTAATGTTAACACTTCTTTTTGTCAGTTAGCTTCCTTTTCTTTTG
TGACAAAGTTCAGGATCATTAACGAGCAAAATGACAAACTTTAAAGATCG
GAACTAAANAGTTAGCTCCCTTTTCTTTTGTGACAAAGTTCAGGATCATT
AACCAGCAAAATGACAAACTGTTTTCTCACTATTTCAGCTCAACAACAAT
ATGTTCCACCGCCCCAACAAGGATATCCAGCACAACAACCAGCTTACCCA
CCACCCCAACAGGGCGCTTACCCGCCGCCCCAACAAGGTGCTTATCCAAA
CCAAGGTTACGCCCCACAAACACAACCTGGAGCTTATCCTCAACCAGGGG
CATATCCGCCGCCCCAGCAAGGATATCCGCCCGTCTCTCAACACGGATAC
GCTCCACCGCCCGTTTATCAAGAATCTGCAACGCCCCAACCACAACCACC
AGTCCAATAAAGTCATTGCTTAAAACCTCAATGAAAGAAACGCACTATTT
GGCGATAATTAAGCTTTGTATTCCTGTTGTTGTAAAAAGACACATTTTAC
CTGTAAAACTTTTTTCACATGCACGTAAAATTTTACTTTAGACCTTACGG
AAAATCGTTCGTAAGGCTGTCTTTTGGGAATTTCCTCGTAACTATGTAGA
GTTTTTGTTCTACCACTGCACTACGGTCGCTTGGAAAGTGGTTGACGGCG
GCAGTACCGCAAACCAGAGGTTTCTGGTTCGAATTTCCGTTGCGCCGTGT
GACCTTGGATAATTCGAATCTGTTTATAATTCGAACTAAATCCTTGGTCC
TCTGAGATTTAAAATCGTCATAATACTCATAATTTGAATCTTTCCCTAAT
TCAAAGGAAATTCCCTTAAGTGAAACTTTACGTACATGTGAAAAAAGCTA
AAACATCACTAACCCGATTGACTATAGAATTTCAAAACGATTTCTTTCTG
TTCTCTTCTGTTGTTTATAATGGGCACAATACTATGAAGTTTGTGTTGGG
TGCTCCTATAGTTCTTTTATAGATTTAGGATTGTAATTTTAATGATATCA
TTTATTTTAGGATTTATAATATTTTTTGATGATTTTTAGATCTGCACTTC
ATATGCATATACATTTTAAATTCGATATATATTGCTTTTATTTTTGATAA
TTTTTTTAAAATGGATATTAAATATTTGATCTAGAATATGTCCATATACA
CGCTTTTTTTATAAGAACAATTTTATAAGAACACGAGGCTGAAAATTGAC
CAAAACCTAAGAACAAATTAAGAATAATGCGAGCGTCAGATTTCGAAGAT
ACTAAGAAAGTACTGATTCTAAACCTATTTTTAAGAACATCATACAGAAC
ATTTAGGCCTTGAAATTTCAAAAAATTCAGAACAGCTCAGCTCGAGCCAA
AATTTACTGTTTCTTATAAAAAAAACTTGTATCCATGTTTGTCTACGTTT
GTCTGTTTGTTGTGTCTAAATAAAAAAATGTTTAAATAATGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006965-exon-sc0000072-1575043694:620269..620287 | TCONS_00006965-exon-sc0000072-1575043694:620269..620287 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1575043694:618891..619049 | TCONS_00006965-exon-sc0000072-1575043694:618891..619049 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1575043694:616900..617085 | TCONS_00006965-exon-sc0000072-1575043694:616900..617085 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1575043694:613794..615099 | TCONS_00006965-exon-sc0000072-1575043694:613794..615099 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1510915933:620269..620287 | TCONS_00006965-exon-sc0000072-1510915933:620269..620287 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1510915933:618891..619049 | TCONS_00006965-exon-sc0000072-1510915933:618891..619049 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1510915933:616900..617085 | TCONS_00006965-exon-sc0000072-1510915933:616900..617085 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1510915933:613794..615099 | TCONS_00006965-exon-sc0000072-1510915933:613794..615099 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1491911889:620269..620287 | TCONS_00006965-exon-sc0000072-1491911889:620269..620287 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1491911889:618891..619049 | TCONS_00006965-exon-sc0000072-1491911889:618891..619049 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1491911889:616900..617085 | TCONS_00006965-exon-sc0000072-1491911889:616900..617085 | Clytia hemisphaerica | exon |
| TCONS_00006965-exon-sc0000072-1491911889:613794..615099 | TCONS_00006965-exon-sc0000072-1491911889:613794..615099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:613794..620287 - |
Blast
The following BLAST results are available for this feature:
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