|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070162 ID=TCONS_00070162|Name=TCONS_00070162|organism=Clytia hemisphaerica|type=transcript|length=2229bpRun BLAST on NCBI transcript from alignment at scaffold_514:24927..32556+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070162 ID=TCONS_00070162|Name=TCONS_00070162|organism=Clytia hemisphaerica|type=transcript|length=7630bp|location=Sequence derived from alignment at scaffold_514:24927..32556+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070162 vs. Swiss-Prot (Human)
Match: EDEM1 (ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Homo sapiens GN=EDEM1 PE=1 SV=1) HSP 1 Score: 436.417 bits (1121), Expect = 1.531e-171 Identity = 219/374 (58.56%), Postives = 280/374 (74.87%), Query Frame = 1
Query: 556 QVNLISGVPPNXXXXXXXXXXXXLVLEFGILGRLLDDPTIEYQARKVVDELWSYQSKSTGLFGNVIDIHSGEWIGKMSGLGAGIDSFYEYLLKSYILFGQKEDLHRFNKIYDRIKRHMRKGRRKCNNGTGEVPLYVNVHMDSGEIMNTWIDALQSVFTGVQVLHGDIEEAICSHAIYYAIWRKYGALPERFNWKLKAPDVKFYPLRPEFSESTYLLYQATKHPFYLHVGTEIVESLNKYTKVKCGYATLHDVEDKSTEDRMESFFLSETIKYLYLLFDVDNPINKDASQWIFSTEGHIFKLDQKYRGKXXXXXXXXXXXXRANDDDVLNVHQSANQ-----TETTSCDNYKIDKSSRMPLFDRYYTQIKDFVGI 1662
+VNL +GVPP+ TCTAGAG+L++EFGIL RLL D T E+ AR+ V LW+ +S TGL GNV++I +G W+GK SGLGAG+DSFYEYLLKSYILFG+KEDL FN Y I+ ++R+GR CN G G+ PLYVNV+M SG++MNTWID+LQ+ F G+QVL GD+E+AIC HA YYAIW++YGALPER+NW+L+APDV FYPLRPE ESTYLLYQATK+PFYLHVG +I++SL KYTKVKCGYATLH V DKSTEDRMESFFLSET KYLYLLFD DNP++K ++++F+TEGHI +D+ R + + ++ EE D +VH+ +++C+ ++ +PL Y QI VG+
Sbjct: 286 RVNLKTGVPPDTNNETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLR---ELPWKEFFSEEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGL 656 HSP 2 Score: 186.808 bits (473), Expect = 1.531e-171 Identity = 98/171 (57.31%), Postives = 128/171 (74.85%), Query Frame = 3
Query: 60 FAQQYS-YFPEDERLRMKNKVKDMFYFGYNNYMKYAFPLDELNPIFCTGRGPDKEXXXXXXXXXVLGGYSLTLIDSLDTLAVIGNHSEFKNAVSRVISNVNFNTDNTIQIFEAAIRVLGGLLSAHLLIVSPSKEFQSLRPQDYGDELLNMAHDLANRLLVAFEGTQTGQPH 569
+ ++YS FP R +M++ + MF FGY+NYM +AFP DELNPI C GRGPD+ + N+NINDVLG YSLTL+D+LDTLA++GN SEF+ AV VI+ V+F+ D+T+Q+FEA IRVLG LLSAH +I + F + +DY +ELL MAHDLA RLL AFE T+TG P+
Sbjct: 114 YEKRYSGAFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPY 284 The following BLAST results are available for this feature:
BLAST of TCONS_00070162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.