|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070099 ID=TCONS_00070099|Name=TCONS_00070099|organism=Clytia hemisphaerica|type=transcript|length=2680bp
actttcctcaaaacacccaggtaaaatccaggagtcgccttaaagacatc
tgttcttaaaatccaggaacacattttaaggaaaaacacatacaattttc
cagcggacaatCTTCATGTCCTTAATGTTCAAAAAATCCTAGAgctaaaa
ttgtgaaaaacacaaccagatgccagatttttttccagggagcttcaaaa
ttttcttaaaaggtctcattttctaggagcattttaacttgctttagaga
atagctgttatatttttccaggagcataatatttctagagaacagatata
cattttccaggagtcccattttttcccagaacagatgatataatccagga
gagcccaggatacagaacagatagttttttccaggagaaagggacctcaa
gaacagatatcTCATACTTCCTAGCCAGTGGCTGCTCTTGCATAAACAAA
GATGAAACATACACCACAGAGAGGGGAAAACATCAGGAAAGGTTAATTGC
AGAAAAGTTTGAGGAAACCATAGAAACGGCAACAAGGCATAAACCAATGG
AAATCACCACAATGACCATAAGCAGAATAatcaaaagctgaaaaaaagaa
aagcacCAGATAGAGAACAATGGAGAAACGAAATGCTAATAGGAGGGGGA
ACTGAAATCAAAGAGCACCTCAGAatcatttttaacaaaatttcaaacGG
AGAGGATATACCCCAAGCGTGGCAACGAGTCAAAATAAAAAGCATCCACA
AGAAAGGATCCTCACTGGAAATGAACAATAGGAGAGGAATCTTTATTACA
AACGTGGTCAGTAAAGTATGGGAAAAAGTGCTCCtagaaaaaatgaatga
aacaatgaaaattgaCATAAACCAGAACGGTGGGCAGAAGGGAAGAGGAA
CCTTGGACAACTTGATGGCCATACTGAGCATACAGCAGATGGCAAAGCAT
AGAGAAACATACATTGTCTTTGCAGACGCAAATAAGTTTTTCGACCGACT
TTGGCTTAAAGACTGCATCAATGACTTAAAAGATGCAGGAGTGAGAGAAG
CTGAAGCTAGACAAGTGTTCGAACTAAACAAGAAATGCCAAATCATCATT
GACACCCCAGTGGGTTCCACACAGGAGATAGAGATAGGGGAGACCGTGAA
GCAAGGAATAATTTTGGGGCCACAACTTTGCTGTGCATCAACACTGGTGG
TGAACAAAGTTGGGCCcgtGACACTTGGGTGCGGTATGGTAACATCAATG
GCACCAGGGCTACAAGTAAATGCGCTAGCTTACGTAGATGACATTGCTGG
TGCAGATTCTAAACTGGCAGCAGAGAACACTTTGAAAGCACTCAAGGAGA
TGGATGAGACAAAAAATTCCCCTTCTCGACCTCAAAGACGAAAATACTCC
ACatagagaagaaaaagaagaataaaaagaTGGCTatttttgtcaaggca
ggaTCCTGCTGATTTGTTAAGGTGGAAGGcatcttttgcttgtaaaatga
cgttgctgctgttcacacttattggaaattttaaacgagtatcattcttg
aggtttttttaccacttcctctgggagaggtGAGAGCTGTCCTATCCTCC
ACTTGTTGATGGTGGTGGCTGTCGTCAACTGCTGAAATCTTCCATAAATG
GTGTAATGGTTGTTTACTTTGTGGCATTCAATCTTCATGTCACATTTTTG
TGAtaattgattggagtaaccattACTATTACATCAATTACAATTACAAT
CTCatggaaaactatttttatggcttgatcaaaccaaatatctgcaaCAG
CCCCAAGTCAGATTTATAAAACAACATTCGGATTTCGAAATACTTTAACT
TTTTAGACCCTATGATTTTATTGGAATTATGTCATGGTTAAACTTAACAT
TCAGCGGGTATTGTTgccaaacaatgattttttttgtcacGTTGTCAGCC
AATACTGTTCGACTATTTGAGTATCACTTTTACGAAATAGATCATACGCC
ATCGAATATTGGGCGATTGTGGTCCTGTGTGGTCAGTAATATTCGTTGAG
GCTGATTGAGGAGGTACGCTGCTGTGAagaacagacaaaatattttgttg
tggtttgagatcaagcaaacgCCTATTATGTACGTATTAATGCAACACAA
GAAGTGGGTCAAATTGTGATCATGTTTTGTTCAATGATATTTATAACTTT
TACATACTAAGGCAGCAATCACTAATACACTCTccattttatttgaatct
ttttcagtcagtagtagaaaatttcaaattgactGGTCATTCACTGGTGC
AGGTGGTCATCAGTTCAAACACTTTAAATAATTCCCAAataaaataagca
cttttgaagcattttcctTAAAACTCTTGAGTGTGTTTTTGGCGAAGTGA
AATGAAGATGTTTCTGATCGCCGCCTTAGAATATACtataagtggataaa
ttttggcgtggatttaatttggcaattggccaaaatacaattttaaacaG
GGATTTAGCTGACTTGACGATAgatcaatttcataaaatttggcggggat
ttgaTTTGGCGAAATGCAAATTTTGAGACACTTAAATTGgtgaaaaatta
ctttaaaatatactgaaaagttgttattttttacataatattatttttgt
taaatttggcgggaatttagtTTGGTGAAT Run BLAST on NCBI protein sequence of TCONS_00070099-protein >TCONS_00070099-protein ID=TCONS_00070099-protein|Name=TCONS_00070099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MLIGGGTEIKEHLRIIFNKISNGEDIPQAWQRVKIKSIHKKGSSLEMNNR
RGIFITNVVSKVWEKVLLEKMNETMKIDINQNGGQKGRGTLDNLMAILSI
QQMAKHRETYIVFADANKFFDRLWLKDCINDLKDAGVREAEARQVFELNK
KCQIIIDTPVGSTQEIEIGETVKQGIILGPQLCCASTLVVNKVGPVTLGC
GMVTSMAPGLQVNALAYVDDIAGADSKLAAENTLKALKEMDETKNSPSRP
QRRKYST Run BLAST on NCBI transcript from alignment at scaffold_513:251794..256267- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070099 ID=TCONS_00070099|Name=TCONS_00070099|organism=Clytia hemisphaerica|type=transcript|length=4474bp|location=Sequence derived from alignment at scaffold_513:251794..256267- (Clytia hemisphaerica)
ACTTTCCTCAAAACACCCAGGTAAAATCCAGGAGTCGCCTTAAAGACATC
TGTTCTTAAAATCCAGGAACACATTTTAAGGAAAAACACATACAATTTTC
CAGCGGACAATCTTCATGTCCTTAATGTTCAAAAAATCCTAGAGCTAAAA
TTGTGAAAAACACAACCAGATGCCAGATTTTTTTCCAGGGAGCTTCAAAA
TTTTCTTAAAAGGTCTCATTTTCTAGGAGCATTTTAACTTGCTTTAGAGA
ATAGCTGTTATATTTTTCCAGGAGCATAATATTTCTAGAGAACAGATATA
CATTTTCCAGGAGTCCCATTTTTTCCCAGAACAGATGATATAATCCAGGA
GAGCCCAGGATACAGAACAGATAGTTTTTTCCAGGAGAAAGGGACCTCAA
GAACAGATATCTCATACTTCCTAGCCAGTGGCTGCTCTTGCATAAACAAA
GATGAAACATACACCACAGAGAGGGGAAAACATCAGGAAAGGTTAATTGC
AGAAAAGTTTGAGGAAACCATAGAAACGGCAACAAGGCATAAACCAATGG
AAATCACCACAATGACCATAAGCAGAATAATCAAAAGCTGAAAAAAAGAA
AAGCACCAGATAGAGAACAATGGAGAAACGAAATGCTAATAGGAGGGGGA
ACTGAAATCAAAGAGCACCTCAGAATCATTTTTAACAAAATTTCAAACGG
AGAGGATATACCCCAAGCGTGGCAACGAGTCAAAATAAAAAGCATCCACA
AGAAAGGATCCTCACTGGAAATGAACAATAGGAGAGGAATCTTTATTACA
AACGTGGTCAGTAAAGTATGGGAAAAAGTGCTCCTAGAAAAAATGAATGA
AACAATGAAAATTGACATAAACCAGAACGGTGGGCAGAAGGGAAGAGGAA
CCTTGGACAACTTGATGGCCATACTGAGCATACAGCAGATGGCAAAGCAT
AGAGAAACATACATTGTCTTTGCAGACGCAAATAAGTTTTTCGACCGACT
TTGGCTTAAAGACTGCATCAATGACTTAAAAGATGCAGGAGTGAGAGAAG
CTGAAGCTAGACAAGTGTTCGAACTAAACAAGAAATGCCAAATCATCATT
GACACCCCAGTGGGTTCCACACAGGAGATAGAGATAGGGGAGACCGTGAA
GCAAGGAATAATTTTGGGGCCACAACTTTGCTGTGCATCAACACTGGTGG
TGAACAAAGTTGGGCCCGGTATGTATGTATGTAATGTATGTAATAGTTTA
TTTCAAGTTGACGAACAGGTAGCAACAAAGGCTAATAAAAGTCAACGCTA
CTTTACAATTTGTAAGGTGATTACAAAAAGCCGACACCGTCAATATAGGT
CCGGCAGTTTCTACACGGGCATGATGTAGGCCTCCACCTCGGGTGAGTTA
GGGCGTGTCTAGATTTAAAAAAAAACACAAATCCCGAATCCGCGACCAAT
AGCACCCATTCTCACGGATTCACTTATGGATTTTTAGATGACCTATACCT
TAAAGTTTCAGGACCCAGTGTTACGTAATTAAATATTAAGCTAAAAATTA
ATTATTAAAGAAAGTGTGAATTGTGACGTCATCAAATTATGACGTCATAA
ATCGTAAATTAGCTCTAACTCTATAAGTACATGTCATATCGTTGTCAAAT
TTGGACCAAAGACGCATCTTAATGGTGCCGAACTTTTCAATGAAAATTTT
TTTGAAGATTTTGATGACGTCAGCAAAAAATGCAAAAAATCGAAAAGTAC
AATTTTTTGCTGACGTCATCAAATTTTTCCAAATTTTTTATTTCAAAAAG
TTACATTTTAGTTAGATGCATCTTTGGTTCAAATTTGGGATAGATTTGAC
ATGTATTTTTTATATTGTAGCGATTATACGATTCACGACGTCACAAAATT
CGATCAAATTATGACGTCATGATTACACTTTCTTTAATAATTAATTTTTA
GGTTAATATTTAATTACGTAACAACCGGGCCCTGAAACCTTAAGGTATAG
AGGTACTTTAGAGCCCTAAGTGAATCTCTGAATCTGGCTGCTATTGGTAG
CGAAAACTTAGGGTAAACTGTTAGGTTTTTGAGACTTGCCCTAAGTCACT
CGAGACTGCTTAATCTTTTCCTTACAAATACTAAGATCGACTATATCTCT
ATACTCATCCGGAATTAATTCCCAAACTTTTGGCCCTAAAAATGAAAGTG
ACTCTAAACCGTGAAAAACAGAGTTTATTTCTCTTGATCTTCTGAAGTAA
GGCGTTTTGCGATTTACTTTGATATTTTCATCATGTTTGAAAATTTCTTT
AGTTAGATCTGATATGTTATTTTTACATTTGAAAAGTTCTATTGCTAACT
GAAGATTTTTTTTGGTGGAATTTGATGGCACCGTCTTTCTCTAAAAGCTG
CTCAAAAGTAGATGTATGATCAGAATACACTATCCTCAGACATCTTTCGT
GGAGGTGATTTATTTTTTTATCTAGCCTGCGAACATGAAACATCCAGACA
AGCGAACAATAATTGACTTGACTTCGAAAGAAGGCATTCATGAGCCTTTG
CTTTTTCTTTTGATTCATGTACGGTGCTACTCTCGCAAGTGCACTGATTT
TCTGGCTAGCTTTCTTATAAATCGTGTTAATATGTGCCTCAAAAGTCAGA
CAGTTGTCAAAAGTTAATCCTAGGATCTTGCCTTAGTTGCTGTTAGAGAT
GCGTTCATTCTGTATAGTAATGAAGATTTCTTTGCTAGTATTGTTAGCTA
TCAACTCAGACTTGTCTGCATTTTCTTTCATTTGATTTTGGGTTATCCAT
TCAAAGATGATAGCAGCTCCATTCGAGAGCTCCTCACCAACCTGTTCCCA
AGAGTATGGCTAAAAGTGGAGTTTGTGTACTCTTACCTTTTCTATATCCA
AATTGTCTATTGCTCAAAATGTTGTTAAAGTAGGTTGTGATTTTCCCGAC
TTCCTCTTTCGTTGTTGGTATAAAGGAAAATTTATTTAGATATTCAGTTT
TCTTGATTTCAGTGACACTTGGGTGCGGTATGGTAACATCAATGGCACCA
GGGCTACAAGTAAATGCGCTAGCTTACGTAGATGACATTGCTGGTGCAGA
TTCTAAACTGGCAGCAGAGAACACTTTGAAAGCACTCAAGGAGATGGATG
AGACAAAAAATTCCCCTTCTCGACCTCAAAGACGAAAATACTCCACATAG
AGAAGAAAAAGAAGAATAAAAAGATGGCTATTTTTGTCAAGGCAGGATCC
TGCTGATTTGTTAAGGTGGAAGGCATCTTTTGCTTGTAAAATGACGTTGC
TGCTGTTCACACTTATTGGAAATTTTAAACGAGTATCATTCTTGAGGTTT
TTTTACCACTTCCTCTGGGAGAGGTGAGAGCTGTCCTATCCTCCACTTGT
TGATGGTGGTGGCTGTCGTCAACTGCTGAAATCTTCCATAAATGGTGTAA
TGGTTGTTTACTTTGTGGCATTCAATCTTCATGTCACATTTTTGTGATAA
TTGATTGGAGTAACCATTACTATTACATCAATTACAATTACAATCTCATG
GAAAACTATTTTTATGGCTTGATCAAACCAAATATCTGCAACAGCCCCAA
GTCAGATTTATAAAACAACATTCGGATTTCGAAATACTTTAACTTTTTAG
ACCCTATGATTTTATTGGAATTATGTCATGGTTAAACTTAACATTCAGCG
GGTATTGTTGCCAAACAATGATTTTTTTTGTCACGTTGTCAGCCAATACT
GTTCGACTATTTGAGTATCACTTTTACGAAATAGATCATACGCCATCGAA
TATTGGGCGATTGTGGTCCTGTGTGGTCAGTAATATTCGTTGAGGCTGAT
TGAGGAGGTACGCTGCTGTGAAGAACAGACAAAATATTTTGTTGTGGTTT
GAGATCAAGCAAACGCCTATTATGTACGTATTAATGCAACACAAGAAGTG
GGTCAAATTGTGATCATGTTTTGTTCAATGATATTTATAACTTTTACATA
CTAAGGCAGCAATCACTAATACACTCTCCATTTTATTTGAATCTTTTTCA
GTCAGTAGTAGAAAATTTCAAATTGACTGGTCATTCACTGGTGCAGGTGG
TCATCAGTTCAAACACTTTAAATAATTCCCAAATAAAATAAGCACTTTTG
AAGCATTTTCCTTAAAACTCTTGAGTGTGTTTTTGGCGAAGTGAAATGAA
GATGTTTCTGATCGCCGCCTTAGAATATACTATAAGTGGATAAATTTTGG
CGTGGATTTAATTTGGCAATTGGCCAAAATACAATTTTAAACAGGGATTT
AGCTGACTTGACGATAGATCAATTTCATAAAATTTGGCGGGGATTTGATT
TGGCGAAATGCAAATTTTGAGACACTTAAATTGGTGAAAAATTACTTTAA
AATATACTGAAAAGTTGTTATTTTTTACATAATATTATTTTTGTTAAATT
TGGCGGGAATTTAGTTTGGTGAAT Coding sequence (CDS) from alignment at scaffold_513:251794..256267- >TCONS_00070099 ID=TCONS_00070099|Name=TCONS_00070099|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_513:251794..256267- (Clytia hemisphaerica)
TGACACTTGGGTGCGGTATGGTAACATCAATGGCACCAGGGCTACAAGTA
AATGCGCTAGCTTACGTAGATGACATTGCTGGTGCAGATTCTAAACTGGC
AGCAGAGAACACTTTGAAAGCACTCAAGGAGATGGATGAGACAAAAAATT
CCCCTTCTCGACCTCAAAGACGAAAATACTCCACATAGATGCTAATAGGA
GGGGGAACTGAAATCAAAGAGCACCTCAGAATCATTTTTAACAAAATTTC
AAACGGAGAGGATATACCCCAAGCGTGGCAACGAGTCAAAATAAAAAGCA
TCCACAAGAAAGGATCCTCACTGGAAATGAACAATAGGAGAGGAATCTTT
ATTACAAACGTGGTCAGTAAAGTATGGGAAAAAGTGCTCCTAGAAAAAAT
GAATGAAACAATGAAAATTGACATAAACCAGAACGGTGGGCAGAAGGGAA
GAGGAACCTTGGACAACTTGATGGCCATACTGAGCATACAGCAGATGGCA
AAGCATAGAGAAACATACATTGTCTTTGCAGACGCAAATAAGTTTTTCGA
CCGACTTTGGCTTAAAGACTGCATCAATGACTTAAAAGATGCAGGAGTGA
GAGAAGCTGAAGCTAGACAAGTGTTCGAACTAAACAAGAAATGCCAAATC
ATCATTGACACCCCAGTGGGTTCCACACAGGAGATAGAGATAGGGGAGAC
CGTGAAGCAAGGAATAATTTTGGGGCCACAACTTTGCTGTGCATCAACAC
TGGTGGTGAACAAAGTTGGGCCCGTGACACTTGGGTGCGGTATGGTAACA
TCAATGGCACCAGGGCTACAAGTAAATGCGCTAGCTTACGTAGATGACAT
TGCTGGTGCAGATTCTAAACTGGCAGCAGAGAACACTTTGAAAGCACTCA
AGGAGATGGATGAGACAAAAAATTCCCCTTCTCGACCTCAAAGACGAAAA
TACTCCACATAGATGCTAATAGGAGGGGGAACTGAAATCAAAGAGCACCT
CAGAATCATTTTTAACAAAATTTCAAACGGAGAGGATATACCCCAAGCGT
GGCAACGAGTCAAAATAAAAAGCATCCACAAGAAAGGATCCTCACTGGAA
ATGAACAATAGGAGAGGAATCTTTATTACAAACGTGGTCAGTAAAGTATG
GGAAAAAGTGCTCCTAGAAAAAATGAATGAAACAATGAAAATTGACATAA
ACCAGAACGGTGGGCAGAAGGGAAGAGGAACCTTGGACAACTTGATGGCC
ATACTGAGCATACAGCAGATGGCAAAGCATAGAGAAACATACATTGTCTT
TGCAGACGCAAATAAGTTTTTCGACCGACTTTGGCTTAAAGACTGCATCA
ATGACTTAAAAGATGCAGGAGTGAGAGAAGCTGAAGCTAGACAAGTGTTC
GAACTAAACAAGAAATGCCAAATCATCATTGACACCCCAGTGGGTTCCAC
ACAGGAGATAGAGATAGGGGAGACCGTGAAGCAAGGAATAATTTTGGGGC
CACAACTTTGCTGTGCATCAACACTGGTGGTGAACAAAGTTGGGCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070099-exon-scaffold_513-1575043694:255050..256267 | TCONS_00070099-exon-scaffold_513-1575043694:255050..256267 | Clytia hemisphaerica | exon |
| TCONS_00070099-exon-scaffold_513-1575043694:251794..253255 | TCONS_00070099-exon-scaffold_513-1575043694:251794..253255 | Clytia hemisphaerica | exon |
| TCONS_00070099-exon-scaffold_513-1510915933:255050..256267 | TCONS_00070099-exon-scaffold_513-1510915933:255050..256267 | Clytia hemisphaerica | exon |
| TCONS_00070099-exon-scaffold_513-1510915933:251794..253255 | TCONS_00070099-exon-scaffold_513-1510915933:251794..253255 | Clytia hemisphaerica | exon |
| TCONS_00070099-exon-scaffold_513-1491911889:255050..256267 | TCONS_00070099-exon-scaffold_513-1491911889:255050..256267 | Clytia hemisphaerica | exon |
| TCONS_00070099-exon-scaffold_513-1491911889:251794..253255 | TCONS_00070099-exon-scaffold_513-1491911889:251794..253255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:251794..256267 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
