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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006956 ID=TCONS_00006956|Name=TCONS_00006956|organism=Clytia hemisphaerica|type=transcript|length=1112bp
TGGGAAGTCTAACTAAGTTTATGTCGGATGGTACAACTACATCTATTATG
AAAGAAAAACCGTACCCAACACAACAGAATGCACCAACGCCATCCGCCCC
TCCTTTCCCTTCAAAAACAGAAACGCCCCTCAACCCGAACGTGCAAATCA
TTGATCCAAATCAGAAAGAAACAACTTCACCTCAAGAAGTGATCGACGAT
CAGAAACCTTCAGGCTCTGGTCAGAAGCCTCATAAAAAGAAGAGACGAAA
GCATAAAAAGGAGAGCGGAAATGCAGAGGGCGGGTCAGAAGAAAAGGGTG
CTGATTCAGGGCGTAAAAAGAAACGTAGAAGACGCCCGAAAGATAAAAAA
CCTGTAGAGACAAATGATCTGACTGGAGAACAATCGACTGATCCAAAAGC
GAAACTCGTGAACAATGAAGATGCAACGCCCTCTCCACCACCCTCTCCAC
CACCCTTGGTGCCCAAGCAGGAGACAGAAATAGAAACTGATTCTAATAAG
CCATTGCTTTCTGAGTAATCACGAgctaataaaaagaaaagagaaatgtT
CTAATAATGAAAGACTCCTGGTAGATACAATAATTAGCTCAAACAATGGG
TGTAATTAAGACCCTGGTAAAATGGGCTACAATCAATGCAATTTTATGTT
AGCCAAAAAACACACTCCATTGGCCCAAGAGAGCTGAATTCGGCTATTGA
AGTTTGAGGAGGAACTTGGTGCAAAAATATTATTTACTTCCGACTATTAT
TCACCAGGACTAATTGTTGTTTTAAATTCGGCAGACCGGATTAAAAATTA
CCAGTTTTTATAGAAACTCTGACTATAAGCAATAATGcgatagattttat
ttatgattGGATAACCATTGGATGAATTTAGtaaatctaaatatttttaa
tactttgaatacttttttattttttaaacaatttttatcACATATACTTT
CACTGAATATGAACACAAATTGTACTTTTAGTTTTATGTAAATTTTTATA
CGGCGGTCTGaatggaaaataaaattttatccaaAACCATATTCTTAAAA
CAATTATATTGTTAAATTATGTACTTGGAAAAATTGCTGCTCCTTTTAAT
CGATAACTAAAT Run BLAST on NCBI transcript from alignment at sc0000072:572393..574531- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006956 ID=TCONS_00006956|Name=TCONS_00006956|organism=Clytia hemisphaerica|type=transcript|length=2139bp|location=Sequence derived from alignment at sc0000072:572393..574531- (Clytia hemisphaerica)
TGGGAAGTCTAACTAAGTTTATGTCGGATGGTAGGCTGCACTCAAACCCT
CTGATAACTTTTTGATATAGGGGATACGTATCATATATGAAATTTCTGTC
CGAGAGCTACCCCAAAGGGTCTGTTTCAATCTATAGCCACTTAATAACTT
TTCCTTTGTTTTTCGAGTATAGGCACAAATGAACTCCGCCTGGTCGGTAA
AATATACCCCTCAAAAACACAAAGACGGGCATAACTCTAGGAAAGGAATT
TCAAAATACATGATACGCATCTCTTATATCAAGATTAATTGCAGCCTAGT
CGGACACATCAAATTTTGTAGGAAAGGTTGCATTAAAGCGAAGCTTGTTC
CTCAATATTGTAATAAAAATGTAAAAGTGTAAGAAAGAAAAATACACACA
TCAAAATTTGGTAAAAACAGATTATTTTGAATCAGCTAGCCTCAAAAAAT
ATTATCGCGAGATTTTTTCTCGGTGTGGGATCGTGGACACACTCACTTTA
TGAGTTTGTGTGGTATTGATCCATATTTTCAAGATTAATTTTCAAATTTA
TTTTTATTTCTAACATTCATAGAGCAATGACCGGTTAGCGAGTGCTGTTC
TGGGAAATATTGCCCGTGAGAAGTCGTTGCTTTGTTTGAGGGCAACATTT
CACAGTACAGCCCGAAAAAACCGGTCATTGTTGTATTTATTAACCGTTTC
CTTCGGCTTCGACTGATTTTTTGAGCTTTTTCCAAGAAAAATAGCAAAAA
AAACAAGCGAAAAGAGATCAAAAATTGTTTTAATTTCTGACGTCGAAAAT
GAAAAATGTGACAACTGATGCCAACGCAGTGTTCATTTTCCTTTGAAAAA
ACTGACGTTACAATGAATTTTCTTAGCGACGCGCATCTGTGCAGTGTAGG
CCCGTCGTCATGCAAAAAGAACCAATTGTATTGCGCAAAAGGCCGTGTAG
CCCGCTTCGAGAAAGTAACCGGTTAACAATACTCTAGACACATTTTCGAG
TAAGCCTCTTCAGATATCGTCATATGAATATAATGAATTATTTTTTGCTC
ATCACAGGTACAACTACATCTATTATGAAAGAAAAACCGTACCCAACACA
ACAGAATGCACCAACGCCATCCGCCCCTCCTTTCCCTTCAAAAACAGAAA
CGCCCCTCAACCCGAACGTGCAAATCATTGATCCAAATCAGAAAGAAACA
ACTTCACCTCAAGAAGTGATCGACGATCAGAAACCTTCAGGCTCTGGTCA
GAAGCCTCATAAAAAGAAGAGACGAAAGCATAAAAAGGAGAGCGGAAATG
CAGAGGGCGGGTCAGAAGAAAAGGGTGCTGATTCAGGGCGTAAAAAGAAA
CGTAGAAGACGCCCGAAAGATAAAAAACCTGTAGAGACAAATGATCTGAC
TGGAGAACAATCGACTGATCCAAAAGCGAAACTCGTGAACAATGAAGATG
CAACGCCCTCTCCACCACCCTCTCCACCACCCTTGGTGCCCAAGCAGGAG
ACAGAAATAGAAACTGATTCTAATAAGCCATTGCTTTCTGAGTAATCACG
AGCTAATAAAAAGAAAAGAGAAATGTTCTAATAATGAAAGACTCCTGGTA
GATACAATAATTAGCTCAAACAATGGGTGTAATTAAGACCCTGGTAAAAT
GGGCTACAATCAATGCAATTTTATGTTAGCCAAAAAACACACTCCATTGG
CCCAAGAGAGCTGAATTCGGCTATTGAAGTTTGAGGAGGAACTTGGTGCA
AAAATATTATTTACTTCCGACTATTATTCACCAGGACTAATTGTTGTTTT
AAATTCGGCAGACCGGATTAAAAATTACCAGTTTTTATAGAAACTCTGAC
TATAAGCAATAATGCGATAGATTTTATTTATGATTGGATAACCATTGGAT
GAATTTAGTAAATCTAAATATTTTTAATACTTTGAATACTTTTTTATTTT
TTAAACAATTTTTATCACATATACTTTCACTGAATATGAACACAAATTGT
ACTTTTAGTTTTATGTAAATTTTTATACGGCGGTCTGAATGGAAAATAAA
ATTTTATCCAAAACCATATTCTTAAAACAATTATATTGTTAAATTATGTA
CTTGGAAAAATTGCTGCTCCTTTTAATCGATAACTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006956-exon-sc0000072-1575043694:574502..574531 | TCONS_00006956-exon-sc0000072-1575043694:574502..574531 | Clytia hemisphaerica | exon |
| TCONS_00006956-exon-sc0000072-1575043694:572393..573474 | TCONS_00006956-exon-sc0000072-1575043694:572393..573474 | Clytia hemisphaerica | exon |
| TCONS_00006956-exon-sc0000072-1510915933:574502..574531 | TCONS_00006956-exon-sc0000072-1510915933:574502..574531 | Clytia hemisphaerica | exon |
| TCONS_00006956-exon-sc0000072-1510915933:572393..573474 | TCONS_00006956-exon-sc0000072-1510915933:572393..573474 | Clytia hemisphaerica | exon |
| TCONS_00006956-exon-sc0000072-1491911889:574502..574531 | TCONS_00006956-exon-sc0000072-1491911889:574502..574531 | Clytia hemisphaerica | exon |
| TCONS_00006956-exon-sc0000072-1491911889:572393..573474 | TCONS_00006956-exon-sc0000072-1491911889:572393..573474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:572393..574531 - |
Blast
The following BLAST results are available for this feature:
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