|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069932 ID=TCONS_00069932|Name=TCONS_00069932|organism=Clytia hemisphaerica|type=transcript|length=1467bp
NGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATGG
GTGGAGGCTATGGTCAACAAGGTTACGGAATGGGCGGCTACGGCCAACAA
GGTTACGGAATGGGCGGCTATGGTCAACAAGGTTACGGAATGGGCGCTTA
CGGACATACTGGATATGGAGGTATGGGTGGCTATGGAGGCTATGGTCAAC
AAGGCTACGGAATGGGAGGATACGGTGGTTATGGTATGGATGGTGGCTAC
GGTATGGGAGGTTATGGTCAAGGGTACGGTCATGCTGGATATGGAATGGG
AGCAGGATATGGTGGAGCTTACGGTGGTTATGGTGTGGGTGGTGGCTATG
GAGGCTACGGAAACATGGGTGCACCAGCCCTAGGAGCACCAGCTCAATCA
ACTGGTCCAAAATATCCAGGACCTAACCCACCTGCATTGACGTTACCACA
AAAAGCCAAAGCACGTCAATTGATCATTACTGAAGATGATGAGGATGACA
CCAGCTCGCGAAGAAAAGACATCCCAAAAGACGGTCATCATTTACATCGT
CTGTTAGTCTTGCCAGGAGAATGTGAAGGTGATCATTGTACTACCAACTT
CCCAGTACACGGAGGACGTGGTGGTGGTTGTCAAGGTGCTGGATGTGGTG
GATACGGTCACCAAGGCTTCGGTGGAAACTGGGATGCAGCTGATTGTGGT
CATTCAGATTGTGGAGGTTTGGGATTTGGTAACGGATACGGTGTTGGTTG
TGGAGGCGGTGATTGTGGTGGTTTCCATGATATTCATCATCGTCCAATCG
GATGTCCCGAATACAACTCACCAGACTCGCCATGTTTAACTTACCCATAC
GGTAACAATGTTGGTTTCGGATTTCCAGGAAAATTCCACAGCCACCATCC
AGTTTTGTTGCACCCAACACATCAAGAAACAGCCCATCATAACATCCATT
TATCTGGTCGAAGCCATGGTGGGCGTCACGGACGTCGCCATAGCGGAGAT
TTGATCGTATTACCACATTACGGGCATACTTGTTGTGGAGGTGCTGGATG
GAATCCATACTGGGGACATTGAACGTCTTAACGACGTGAAAAACTGTATC
ATAAAGAACACTaattttttagtatttgaatTTTATATAAACACCAcgca
aacaaaattgaaaacccCAGTTGAATTTATATTCATTTCAATGccttttt
ttgaaatcaaattcaTCATAAAAACGACTTCGTGCTTTAAAGAAATAAGC
TGAAAAATCATGTTTTCGCTATGCGTTGCTTTGGAAAATGTGGCAAATCT
ATTTTATATAAACCTTAGCATCATTTCATGTAATTAGAAGCTAGATTTAT
GTAGCCCAACTTATATTGTAAACTCGTTCATCTTcgtttttgaaagaaag
ttttgaaaataaattgatacTGATCTTAATCCAGGAAAAATATACTCTGC
TGGGGGTACTCTCCCTG Run BLAST on NCBI transcript from alignment at scaffold_511:454275..456173+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069932 ID=TCONS_00069932|Name=TCONS_00069932|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at scaffold_511:454275..456173+ (Clytia hemisphaerica)
NGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATGG
GTGGAGGCTATGGTCAACAAGGTTATGGAATGGGTGGTTACGACCAACAA
GGTTACGGTATGGGCGGCTACGGCCAACACGGTTACGGAATGGGCGGCTA
CGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGTTACGGAA
TGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGGTCAACAA
GGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACGGAATGGG
CGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGTT
ACGGAATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGGT
CAACAAGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACGG
AATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAAC
AAGGTTACGGAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGCGGC
TATGGTCAACAAGGTTACGGAATGGGCGCTTACGGACATACTGGATATGG
AGGTATGGGTGGCTATGGAGGCTATGGTCAACAAGGCTACGGAATGGGAG
GATACGGTGGTTATGGTATGGATGGTGGCTACGGTATGGGAGGTTATGGT
CAAGGGTACGGTCATGCTGGATATGGAATGGGAGCAGGATATGGTGGAGC
TTACGGTGGTTATGGTGTGGGTGGTGGCTATGGAGGCTACGGAAACATGG
GTGCACCAGCCCTAGGAGCACCAGCTCAATCAACTGGTCCAAAATATCCA
GGACCTAACCCACCTGCATTGACGTTACCACAAAAAGCCAAAGCACGTCA
ATTGATCATTACTGAAGATGATGAGGATGACACCAGCTCGCGAAGAAAAG
ACATCCCAAAAGACGGTCATCATTTACATCGTCTGTTAGTCTTGCCAGGA
GAATGTGAAGGTGATCATTGTACTACCAACTTCCCAGTACACGGAGGACG
TGGTGGTGGTTGTCAAGGTGCTGGATGTGGTGGATACGGTCACCAAGGCT
TCGGTGGAAACTGGGATGCAGCTGATTGTGGTCATTCAGATTGTGGAGGT
TTGGGATTTGGTAACGGATACGGTGTTGGTTGTGGAGGCGGTGATTGTGG
TGGTTTCCATGATATTCATCATCGTCCAATCGGATGTCCCGAATACAACT
CACCAGACTCGCCATGTTTAACTTACCCATACGGTAACAATGTTGGTTTC
GGATTTCCAGGAAAATTCCACAGCCACCATCCAGTTTTGTTGCACCCAAC
ACATCAAGAAACAGCCCATCATAACATCCATTTATCTGGTCGAAGCCATG
GTGGGCGTCACGGACGTCGCCATAGCGGAGATTTGATCGTATTACCACAT
TACGGGCATACTTGTTGTGGAGGTGCTGGATGGAATCCATACTGGGGACA
TTGAACGTCTTAACGACGTGAAAAACTGTATCATAAAGAACACTaatttt
ttagtatttgaatTTTATATAAACACCAcgcaaacaaaattgaaaacccC
AGTTGAATTTATATTCATTTCAATGcctttttttgaaatcaaattcaTCA
TAAAAACGACTTCGTGCTTTAAAGAAATAAGCTGAAAAATCATGTTTTCG
CTATGCGTTGCTTTGGAAAATGTGGCAAATCTATTTTATATAAACCTTAG
CATCATTTCATGTAATTAGAAGCTAGATTTATGTAGCCCAACTTATATTG
TAAACTCGTTCATCTTcgtttttgaaagaaagttttgaaaataaattgat
acTGATCTTAATCCAGGAAAAATATACTCTGCTGGGGGTACTCTCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069932-exon-scaffold_511-1491911889:454275..454345 | TCONS_00069932-exon-scaffold_511-1491911889:454275..454345 | Clytia hemisphaerica | exon |
| TCONS_00069932-exon-scaffold_511-1510915933:454275..454345 | TCONS_00069932-exon-scaffold_511-1510915933:454275..454345 | Clytia hemisphaerica | exon |
| TCONS_00069932-exon-scaffold_511-1575043694:454275..454345 | TCONS_00069932-exon-scaffold_511-1575043694:454275..454345 | Clytia hemisphaerica | exon |
| TCONS_00069932-exon-scaffold_511-1491911889:454778..456173 | TCONS_00069932-exon-scaffold_511-1491911889:454778..456173 | Clytia hemisphaerica | exon |
| TCONS_00069932-exon-scaffold_511-1510915933:454778..456173 | TCONS_00069932-exon-scaffold_511-1510915933:454778..456173 | Clytia hemisphaerica | exon |
| TCONS_00069932-exon-scaffold_511-1575043694:454778..456173 | TCONS_00069932-exon-scaffold_511-1575043694:454778..456173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:454275..456173 + |
Blast
The following BLAST results are available for this feature:
|
