TCONS_00069862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069862
Unique NameTCONS_00069862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069862 ID=TCONS_00069862|Name=TCONS_00069862|organism=Clytia hemisphaerica|type=transcript|length=275bp
CTCACTAGAGTACGACACCTTCTACTTCAACAACAACAGTCGGAATCCAG
CGTGGAAATTTGTCTACTATGACTGCTTTTTTGTCCGAACACAGTTGCAT
GATTTGTCATATTTTGTCTGAAGGCCAACCAAAATAGTGCATCTCAGAAA
TCAACAATTCTTCGCtgagtttttttttacaatcacCTAAACTTTTACCA
ATTGGTTTACCAATTTTACCAACCGGCAACAAataatattctcaacttca
gttgagctagaatctgagaatgtct
Run BLAST on NCBI

transcript from alignment at scaffold_510:30156..30430

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069862 ID=TCONS_00069862|Name=TCONS_00069862|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at scaffold_510:30156..30430 (Clytia hemisphaerica)
agacattctcagattctagctcaactgaagttgagaatattatTTGTTGC
CGGTTGGTAAAATTGGTAAACCAATTGGTAAAAGTTTAGgtgattgtaaa
aaaaaactcaGCGAAGAATTGTTGATTTCTGAGATGCACTATTTTGGTTG
GCCTTCAGACAAAATATGACAAATCATGCAACTGTGTTCGGACAAAAAAG
CAGTCATAGTAGACAAATTTCCACGCTGGATTCCGACTGTTGTTGTTGAA
GTAGAAGGTGTCGTACTCTAGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043511XLOC_043511Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069862-exon-scaffold_510-1491911889:30156..30430TCONS_00069862-exon-scaffold_510-1491911889:30156..30430Clytia hemisphaericaexon
TCONS_00069862-exon-scaffold_510-1510915933:30156..30430TCONS_00069862-exon-scaffold_510-1510915933:30156..30430Clytia hemisphaericaexon
TCONS_00069862-exon-scaffold_510-1575043694:30156..30430TCONS_00069862-exon-scaffold_510-1575043694:30156..30430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_510supercontigscaffold_510:30156..30430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.67083	8.85188	10.0342	11.4366	1.84114	9.53214	7.35295	9.80661	7.78893	6.71193	16.5604	10.6306	10.9638	5.75027	14.6196	16.7899	10.5151	15.7848	28.8966	26.7143	11.3858	16.7072	5.41212	7.86962	6.38449	0	18.822	22.9736	30.1221	24.1588
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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