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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069840 ID=TCONS_00069840|Name=TCONS_00069840|organism=Clytia hemisphaerica|type=transcript|length=2296bp
CTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTaaagtgaattaa
aatgaagatttcaaACCTTTGTAAGGATGTTATTAAATTGATTGTGAACA
AGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGTT
TGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACAA
ACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTTG
AGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATAC
TGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATATG
GTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTAT
TGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTAC
ATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTAC
TTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCGT
TTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTAG
CAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACCA
ACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCCA
TCACATGATTTTATCActtcttgttttgttttcaattttgataactACAA
AGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCAG
GAGACCACACGTTTCGTGTGGCTGCGAATATAGGCATGTACAAAGACAGA
AGGTGGATCAAACTGTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAGG
TCAGGTAATGGGTTTCAGACTGGTTAAAGGAACTAAATTTGACCTTGTTT
ATGACATTTTCAAACAACTGGCTGAGAAAGGAACCACGCCACACTTTATT
ATCATTGACAACTGTTGTTTATGGGTAAACAAATTGAATGAATTATTCCC
TGGTGTTGCTGTTAAACTAGATCTGTTTCATGCCATAGCGAGATTAACCG
GACAGGTTTAAAAAAAACACCCATTGTTTTTTGACTTTGTAAAAGAACTG
GGACTAATATTCCGAGAAATTTCAGATTTTGGAGAGGGTGAACCAAGAAC
GTTGCCGGGAAGTGCATCCACGTTGGTCATCAATAAAGATAACAAAGGAA
ATAATGTAGCCGTTCTTGCTGAAGACATATTGGAGGTGGATTCAGATCGA
AAAGATAATGCACAAGAACAAATTAGTTGTGTTTCAAAGATGGTAGTGGT
GTTAGGAtctgttttggaaaaaatcaatgCTATGATCCCAAAAGATCTTT
CAAGTCGACTTTACCGATATCAAGGTTTCACTACACTCATCACTGAAATA
TGGAACCCACTTACATTTTTTCAGGCTGCGAGAAAAATGGAGTCTTTTCC
AGCAATTGCTGAAGTTTTAAAGCTAATGAATCTGCACATTATTGAAACAG
CAGCTGACGATTGCAATGATAGTTTTCTTTTTACCATCTTCAAAGCATTG
AAAGGTCACAACCTTAAATGTGAAATGGATATTGAATTGAAACCTACATT
TGAAGAAAGCCGGGAAGAAATTATCCACGCTCTTTTGCATGAGGCCAACG
GTGTCCGCTGTTTCTTGTATGACAGTCTAATTGAAAGTGATGAAGGTAAT
TGTACAACATTTCTATCAGAAAATAAACTGCAGTTTCTTCAATGTGTGCT
TCCTCTGATTGCTGCAAATGCCTTTTCTCTCCCTATTTTGGTGTTACCTT
CGTGTCATGGAATGCCCATGTTTCCCATCTTACCTGAGGAAATAAGTAAT
AagttgatatttgttttttatgaCATAACCATGTCTTCATATCATTTGCT
AACCAAACATGACCCTGGAAAATCCAGAGCCTTTTGTCGTTGTGGCACAA
GAATCAAAAAGAAAGATGGCAAGTCAGAACCACGCTGTATCAATACATTT
ATGTGTTCttgcaaaaaagaaaatgtgCCGTGCTCAAGTAAATGTACTTG
TCGGAACTGCGACAATGCAAAGACACCACTTCAAGAGGAAAcgaaacaga
aaagaagaaaaaggtcacaatactttctttcaaaatcatCAGTAAATGAA
ATTGATCATCAATCATCAACATCACATATTAATGGAATGCATCACTACAT
TCTGGAAGCCTGTTTACATTTAATGTTGAAGGAAATGCACTGTGAC Run BLAST on NCBI protein sequence of TCONS_00069840-protein >TCONS_00069840-protein ID=TCONS_00069840-protein|Name=TCONS_00069840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MVVVLGSVLEKINAMIPKDLSSRLYRYQGFTTLITEIWNPLTFFQAARKM
ESFPAIAEVLKLMNLHIIETAADDCNDSFLFTIFKALKGHNLKCEMDIEL
KPTFEESREEIIHALLHEANGVRCFLYDSLIESDEGNCTTFLSENKLQFL
QCVLPLIAANAFSLPILVLPSCHGMPMFPILPEEISNKLIFVFYDITMSS
YHLLTKHDPGKSRAFCRCGTRIKKKDGKSEPRCINTFMCSCKKENVPCSS
KCTCRNCDNAKTPLQEETKQKRRKRSQYFLSKSSVNEIDHQSSTSHINGM
HHYILEACLHLMLKEMHCD Run BLAST on NCBI transcript from alignment at scaffold_51:126268..131689- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069840 ID=TCONS_00069840|Name=TCONS_00069840|organism=Clytia hemisphaerica|type=transcript|length=5422bp|location=Sequence derived from alignment at scaffold_51:126268..131689- (Clytia hemisphaerica)
CTGCATGCAACTGAGAGCTGATTGTTTGAATGGATATTAAAGTGAATTAA
AATGAAGATTTCAAACCTTTGTAAGGATGTTATTAAATTGATTGTGAACA
AGGGCGACGTTTTACGCTCAAAATAGTTTGTAGATTTGGACCAATATGTT
TGTGAGCTAAATCAACAAGTTAATAATTATCAAGATGAGGCAAATCACAA
ACAAAAGGATTTGGCATTATTGCCAAACATTCTATTTTTTGACCCTTTTG
AGCAACTCAAAGACTCTGAATTTTTTTACTTCATATTGCAAAGAAGATAC
TGGGAAAAATGTACCATTAGACCCATCACTAGGAACAGAATGGGAATATG
GTGAATCATCAGGCAAAGAACCTAGATTGACTTGGGACATATTTTGGTAT
TGTGCTCTAGTTGGTAAGGTAACCAAGTGTTGTAGTGGGCATTCAATTAC
ATCGTATCACCCTGGAATTTTGCAACAAATTTCAAACTACCCATTCTTAC
TTTCTCACAAGCGTGGAATGACTAAGTCAACATTTGACCTGATAATCCGT
TTAGTTGAACAAGGCAACAATTTTAGCAGCATTGAAAGTATATTTCTTAG
CAGTATCGTCGATATCGTCCATCGAAAACTAGCTCTAATCAACAACACCA
ACATGCAGACATCTATTGAATTCATTGAACAACTGAAGCTGTTTACTCCA
TCACATGATTTTATCACTTCTTGTTTTGTTTTCAATTTTGATAACTACAA
AGATGTTTATCTTTCTGAAATGGATAAACTCACCTTCATTTGGCTTTCAG
GAGACCACACGTTTCGTGTGGCTGCGAATATAGGTAAGTAGCAAAAGTTA
CAAAGAAAGGGGTAGCATTTTCACATTGGGGGATGCCAAGAAGGGGGGTA
CGGAAAAGTGGTTTGTCGGTTTCAGCCTTATTTTTGTCGGTTATCGGTGA
ACGGAAAACATTACGGTGTCGGTGATTGAGCTTTTTTGATCGGTTAATCG
GTGAGTGGATCGATATTCAAGCGGTTTTCGGTGACAAGTTAAGTATAATG
GTTTTGGAGAAATAAATTATCCCAAGAATCAAAAAGTAAATTAACTACTA
CATGTAATTTTTCTTTGCTCGCTTCGCTTGCATAAAATACTGTATCAGTG
ACCAATTGAGTCTTTCAGATTTCAAGAGTGCATAAATGACCTTTGTTACA
GGAAAACTTGGAATAATTCTGCTAGATTTAGTAGCAGTATTGGGGAACTG
CCAGCGGCGGCTGATTTTTCTATGGAGGGGGACAAGGGGCACCAAAAGGC
GCCTCTGACATAGGGTCCACCCCCCAGAGATTTGGGGGTACCTAAAAAAA
AAAATTCTAAACTTTAAGGGGTACCTGGAAGTATTCCCAAATTTAGGGGG
TATCTGATATATTTGGGGGTACCTGTAATCTCGTAAGTGGGGGCGGGGGC
TGTTCTTTCTGTATGAAGTATTTTCCTTGACTCAACCAATTTTCCAATTT
TCAATCAAACTTTTCATTGAGAAGACTTTATAACTTATGTCTTTCCCTTT
TCATCCAGTTTTCTTCTCTTACATTGACAAATGAGCAGAAAATCCTTTAT
ATTGCATTTAACAATAAAAAAGGGGGTAACTCAAAGTTGGGGGGCTAAGT
TTAGAATTCTAAAAATTTTGGGGGTACCAAAATGATTGGGGGTACCTGAA
CCCTGGAGGACCCTATGTCTGATTGCTAATTTTGGCGCCCCTTTGCTGTT
ATAAACCCTAAAATTAGCAGTTTTCAGCCAAAAAGAGGAAAAATATCCAA
AAATTTCGCTGATTTCCGCTGATTTCGCTTGCGTAAGCTTTCCAAATATC
TTTTTCTTAACTCTTTAAAATTACTTCCTTACTTTGCCCAAATATTGGTT
GATCAACCACGCTACTGTTTAGCAGCCCCAAAAAGATGCTCTTTCTAGGC
ACCAAATCTTAGAGATCTCAATCAATCAATATTAGGCTATGCTCATCCTC
TAAGGAAAAGGTTTCTTATATGATCCCTATATGATGCAGAATAGACGTCT
GCGAAAAAGAATAATACAATCAAAATAAGTCTGTTAATGTTTTTTCAACA
TTCTCGACTGGACCCAACTTTTCTTTACCTTTGAATTGTAGAGTCAATTT
AGTGAATGCTTTGGGCAGAAAACCGTTGACTCGTTAATCGTTAATCAGGG
ACTGCGCCTTGTGAAGAAAACAAGAATTTTTTAAATTAAAGACCAAGGGC
ATCATTTTGGGGCAAATTGAGTCTGAAACAGGGCTATTTTGAGCACATTA
GGGAGTCAAAATCCAAAATTTCCTCCTCCTTAGTTTGGCCACTTTACTAT
CAAAATCAAGGGAAGGGCCCTGTTGATCTGATTCATTAGATGATAGATCT
TTTTAAGCCACGGTCTTAAGGAATTTTTAAAACTGAAAAGTTTCATGTCA
GCGCAAACTCTGTTTGCGCCTTTCCTTACCAATACTAGATATTTGACAAC
TATTTGCCATCATACGCATCATATATCATAACTTAATTATTAGCAGCTCA
AGACTTCATAGCCATGTATACAATGATGCTAGTATTTGAAGGGAAACTGA
ACGGCTGAACGGCCCGCTGAACACCACGGATGCCAAACTTATGGTTTTCA
ACTCAAAAAATTATTTTAGGCAAAGTGGCTTTGGATGGGGTCCATATCAA
CTCCAATATCAATGATTAAAAAAGGCTTCTGGAGCAAGAAGGAAAAATCG
GTGTCGGTGAAAAGGATAAATTCTGTCGGTTTATCGGTGAGAGTAGAGCA
ATTTTTGAGCGGTTTATCGGTTTTCGAAAGTCCTGTACGCCCCCCTTACA
AGAAGAGGGTCCTGAGGGGGGGGGGTTTCCGGACCCCCAGGAAACTATGT
TTTCCTAAGAAATCTCACCACAGCAAATGTGCTGCCAAAATTTTGTATAT
AATCCAAGATGGCGGACAAAAAGCGAAAAGGTCCATGTAATATGATATTT
TTATATATCTTTTTCTAAATTCCCTTTACAGGCATGTACAAAGACAGAAG
GTGGATCAAACTGTTTGACTCTTTATTTTGTGTTCTCAATGAAAAAGGTC
AGGTAATGGGTTTCAGACTGGTTAAAGGAACTAAATTTGACCTTGTTTAT
GACATTTTCAAACAACTGGCTGAGAAAGGAACCACGCCACACTTTATTAT
CATTGACAACTGTTGTTTATGGGTAAACAAATTGAATGAATTATTCCCTG
GTGTTGCTGTTAAACTAGATCTGTTTCATGCCATAGCGAGATTAACCGGA
CAGGTTTAAAAAAAACACCCATTGTTTTTTGACTTTGTAAAAGAACTGGG
ACTAATATTCCGAGAAATTTCAGATTTTGGAGAGGTAAGGAAATTGCCTA
CTCCAAAGCCAAATGTGATTTTAGAAAATCTTGAAAGGTTCATCTTGAAA
TGGTCAGATGTCAGTTTCAAAGGTTGGTTTATTCTGACTCCATCCTTTAG
TATGGAAATTGAAAAGCTTAAGAAACATATTAACTTAGGGTGTTGCTCTG
ATATTCCACCTGGTGGTGGCACAAACAAAAATGAAAATCTACATAAACAG
CTGAAAAGCTTAGTTTGTAGAGGAAAAATGAAAACTGAGACGGCAACTGC
AATTTTCTCTCATTTGTTTTACATCCACAATTCTAAGAAGAATGGGGAAA
AGTATGTACACCCTATATTCTCTAAGGGTGAACCAAGAACGTTGCCGGGA
AGTGCATCCACGTTGGTCATCAATAAAGATAACAAAGGAAATAATGTAGC
CGTTCTTGCTGAAGACATATTGGAGGTGGATTCAGATCGAAAAGATAATG
CACAAGAACAAATTAGTAAGTATTGTAAGAATGAATTAATTGTCTGTGTG
TCTGTCTGTCTGTCTGTTTGTCTGTCTGTGTGCATGTCCCAAAACTTTGG
GGCAGCCTGGAGACCTCAAAAATGGTCGGATTTGGCTGAAATTTTGCACA
CTTGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTTTTCAAAATT
TTGATTATTAGAGCCTGGGATAAGTTTTTCACAGCTGCTACAATTGGGCC
TCTGAATAGTTGGAAAAATACTGAAGTTGAGCCCAGTGCGTTGCGCACGT
TCGACTATTTGAAGGGGGCATTCAAAAAAGTATGTTTGTCAGTTTTAGAC
CCCCTGCCCTCTTTATTTGCAGACTTTGATTTCAAACTACCCCTACATTT
GTTTTTTATCTCAAATTTATCCCCCCCCCCTTTGCCCAAAAAGGTTTTTA
CACTTTTTAATATTAAAATGTTTTCCAGTCTTCAAGTGGATAAAGCTACT
TTGAATAAAGTGAATTGCAAAAACTGGGTAAAACGTCTATTTTCATCTGC
ATCACTTTCGATGTTCTATTGCTAAAAATAATTCAAACTTTGATTTTATA
GGTTGTGTTTCAAAGATGGTAGTGGTGTTAGGATCTGTTTTGGAAAAAAT
CAATGCTATGATCCCAAAAGATCTTTCAAGTCGACTTTACCGATATCAAG
GTTTCACTACACTCATCACTGAAATATGGAACCCACTTACATTTTTTCAG
GCTGCGAGAAAAATGGAGTCTTTTCCAGCAATTGCTGAAGTTTTAAAGCT
AATGAATCTGCACATTATTGAAACAGCAGCTGACGATTGCAATGATAGTT
TTCTTTTTACCATCTTCAAAGCATTGAAAGGTCACAACCTTAAATGTGAA
ATGGATATTGAATTGAAACCTACATTTGAAGAAAGCCGGGAAGAAATTAT
CCACGCTCTTTTGCATGAGGCCAACGGTGTCCGCTGTTTCTTGTATGACA
GTCTAATTGAAAGTGATGAAGGTAATTGTACAACATTTCTATCAGAAAAT
AAACTGCAGTTTCTTCAATGTGTGCTTCCTCTGATTGCTGCAAATGCCTT
TTCTCTCCCTATTTTGGTGTTACCTTCGTGTCATGGAATGCCCATGTTTC
CCATCTTACCTGAGGAAATAAGTAATAAGTTGATATTTGTTTTTTATGAC
ATAACCATGTCTTCATATCATTTGCTAACCAAACATGACCCTGGAAAATC
CAGAGCCTTTTGTCGTTGTGGCACAAGAATCAAAAAGAAAGATGGCAAGT
CAGAACCACGCTGTATCAATACATTTATGTGTTCTTGCAAAAAAGAAAAT
GTGCCGTGCTCAAGTAAATGTACTTGTCGGAACTGCGACAATGCAAAGAC
ACCACTTCAAGAGGAAACGAAACAGAAAAGAAGAAAAAGGTCACAATACT
TTCTTTCAAAATCATCAGTAAATGAAATTGATCATCAATCATCAACATCA
CATATTAATGGAATGCATCACTACATTCTGGAAGCCTGTTTACATTTAAT
GTTGAAGGAAATGCACTGTGAC Coding sequence (CDS) from alignment at scaffold_51:126268..131689- >TCONS_00069840 ID=TCONS_00069840|Name=TCONS_00069840|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_51:126268..131689- (Clytia hemisphaerica)
ATGGTAGTGGTGTTAGGATCTGTTTTGGAAAAAATCAATGCTATGATCCC
AAAAGATCTTTCAAGTCGACTTTACCGATATCAAGGTTTCACTACACTCA
TCACTGAAATATGGAACCCACTTACATTTTTTCAGGCTGCGAGAAAAATG
GAGTCTTTTCCAGCAATTGCTGAAGTTTTAAAGCTAATGAATCTGCACAT
TATTGAAACAGCAGCTGACGATTGCAATGATAGTTTTCTTTTTACCATCT
TCAAAGCATTGAAAGGTCACAACCTTAAATGTGAAATGGATATTGAATTG
AAACCTACATTTGAAGAAAGCCGGGAAGAAATTATCCACGCTCTTTTGCA
TGAGGCCAACGGTGTCCGCTGTTTCTTGTATGACAGTCTAATTGAAAGTG
ATGAAGGTAATTGTACAACATTTCTATCAGAAAATAAACTGCAGTTTCTT
CAATGTGTGCTTCCTCTGATTGCTGCAAATGCCTTTTCTCTCCCTATTTT
GGTGTTACCTTCGTGTCATGGAATGCCCATGTTTCCCATCTTACCTGAGG
AAATAAGTAATAAGTTGATATTTGTTTTTTATGACATAACCATGTCTTCA
TATCATTTGCTAACCAAACATGACCCTGGAAAATCCAGAGCCTTTTGTCG
TTGTGGCACAAGAATCAAAAAGAAAGATGGCAAGTCAGAACCACGCTGTA
TCAATACATTTATGTGTTCTTGCAAAAAAGAAAATGTGCCGTGCTCAAGT
AAATGTACTTGTCGGAACTGCGACAATGCAAAGACACCACTTCAAGAGGA
AACGAAACAGAAAAGAAGAAAAAGGTCACAATACTTTCTTTCAAAATCAT
CAGTAAATGAAATTGATCATCAATCATCAACATCACATATTAATGGAATG
CATCACTACATTCTGGAAGCCTGTTTACATTTAATGTTGAAGGAAATGCA
CTGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069840-exon-scaffold_51-1575043694:130857..131689 | TCONS_00069840-exon-scaffold_51-1575043694:130857..131689 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1575043694:128306..128658 | TCONS_00069840-exon-scaffold_51-1575043694:128306..128658 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1575043694:127825..127963 | TCONS_00069840-exon-scaffold_51-1575043694:127825..127963 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1575043694:126268..127238 | TCONS_00069840-exon-scaffold_51-1575043694:126268..127238 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1510915933:130857..131689 | TCONS_00069840-exon-scaffold_51-1510915933:130857..131689 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1510915933:128306..128658 | TCONS_00069840-exon-scaffold_51-1510915933:128306..128658 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1510915933:127825..127963 | TCONS_00069840-exon-scaffold_51-1510915933:127825..127963 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1510915933:126268..127238 | TCONS_00069840-exon-scaffold_51-1510915933:126268..127238 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1491911889:130857..131689 | TCONS_00069840-exon-scaffold_51-1491911889:130857..131689 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1491911889:128306..128658 | TCONS_00069840-exon-scaffold_51-1491911889:128306..128658 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1491911889:127825..127963 | TCONS_00069840-exon-scaffold_51-1491911889:127825..127963 | Clytia hemisphaerica | exon |
| TCONS_00069840-exon-scaffold_51-1491911889:126268..127238 | TCONS_00069840-exon-scaffold_51-1491911889:126268..127238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_51 | supercontig | scaffold_51:126268..131689 - |
Blast
The following BLAST results are available for this feature:
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