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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006885 ID=TCONS_00006885|Name=TCONS_00006885|organism=Clytia hemisphaerica|type=transcript|length=409bp
ccagggtggtccaaagaaatgggaggaaaaaatccaagggggtcctgaaa
atttggaaaaaaatccagagAGGctcacctttttaaaaaaagatttcctc
aacatagggggtacaatttttttctggaatagcccaattagTGTCATGGT
TCATGGTTCGAAAAGTTCGTATAGAAATACCTTTACAGCGTTGATGTTGA
CAATCTTGTAAAAGATATCAGCAGGTGAGAACATTACTAGATACCATACA
ATTGTGATGTAAATCAAGTTGGTATTATTCACATAAAATACATTCAATGT
TGACTTCCCCAGCAAGAAAGCTGAGATGAGAGCACCACCTAGACAGGAAA
CCAGACACACAAACCAACTTGCAAACGGATGTGATTTGGCATAATCTCTT
GAACCTGGC Run BLAST on NCBI transcript from alignment at sc0000072:430247..433021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006885 ID=TCONS_00006885|Name=TCONS_00006885|organism=Clytia hemisphaerica|type=transcript|length=2775bp|location=Sequence derived from alignment at sc0000072:430247..433021+ (Clytia hemisphaerica)
ccagggtggtccaaagaaatgggaggaaaaaatccaagggggtcctgaaa
atttggaaaaaaatccagagAGGctcacctttttaaaaaaagatttcctc
aacatagggggtacaatttttttctggaatagcccaattagTGTCATGGT
TCATGGTTCGAAAAGTTCGTATAGAAATACCTTTACAGCGTTGATGTTGA
CAATCTTGTAAAAGATATCAGCAGGTGAGAACATTACTAGATacctgaaa
aaagaatttaaaagaatttaaagACCATCTCAAAACAGAAATGAATCAAG
GGTGATCAGAATGGTACTGATTCCCTATTCATGGTATGCACCATTGCAGT
GTCTTcaacggacccaacagctgattggtcgaAATCAACGCATTGACATa
ctttacgtcacttacaaacAATCAGCTAGTGGggccatgatgtaatgtca
gaagacattgcaatggtgcatattatgaatagCTTTTGAAAAACTGTGTA
AGCCTCGATGAATTATAATGTAGTTAGACTAGGTAAATTTTGGGGTATGC
GTCTCTAAAGAAGTGAACTTTAGGCCGAGAGGGGCTAAACTCACGAGGAT
CTGGTTTCTTGGTTATGAACGGTAAAAGGACAATATAATAATACGAGTGA
AAAGAGATCAAAAATTGTTacaatttctgacgtcagaaataaacaagcaa
catgctgaatggacctacctgtcgatcaaaatcagaaaaaaataggacaa
atagcaagggaataagaaagtgtagtgagcagcttgaatagattaccgtg
agtatcagagctcaaattagtcaaaaaagtctaaaaaaaacaaacattag
gCACTTTTTTACCCAATTTACCACtatacaaaaaataagaaaaaaatacc
aagccaatctcgagaaatgctcattttccctaaatatgacaaaagggaat
ttccccaaataagaaaatccgatctTTACggccaaaataaattttccgaa
aaaaacaaCTTCAGTCacgttttagagaaccttgcccttcatctttgtcc
aaaaactaatgaagcaatttcacacaaagttcaaaaatcccatttttagg
cactttttggcccaaatttgcccaaataaattattttttgaaaatcaggc
ttcgtcagactttttaaatattaccattttacatcaaagtgcataaattc
agaaaaaaatatcaatccaatcgcaagaaatgctctttttccctaaaaat
gatataagggaatttccccgaataagaaaatccgatttttacggccaaaa
aaaattttccgaaaaaaactgcttcagccactttttagagaaccttaagc
cctaaaaacttatttttaggtagtttttggcccaaatttgcgaaaatccg
tatttgacgacaaaaaaaaattttccgagaaaaattacttcagccacatt
ttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaataaaaa
aaaaataatgagccaatcccgagaaaagcttgtaacagacgaacggacaa
cggtcaaattaaaggacctcccggtaggtccaaaaatgagagaaatgatg
tcaacgcattgttcattttgattggttttatttatattcaaatttatagT
CGGAATACGTTTTTAAGttagagtaaaaaaaaaaaattgttcattttcct
ttgaaaaagtgacgtcataatGAATTTTCCtcacgacgggcaactctgga
cagtgtaggcccgtcgtcatgcaaaaagaaacaattgcattgcacaaaaa
gccgtgtagcccgcttcgaaaaagtaaccggttaacaataagatgataaa
atcaaattaataagAAATTCATCTTTCAGatctaaaatttttctttcaga
tctATCACTAATATGCCTGTAAAAACTCAATAGTATGATTGATACTCATC
GAAACAGAGCGAATATTTTGGGTCCAGTTCAATCAGGTTCAATATTAAAT
CGCAACATACCATACAATTGTGATGTAAATCAAGTTGGTATTATTCACAT
AAAATACATTCAATGTTGACTTCCCCAGCAAGAAAGCTGAGATGAGAGCA
CCACCTAGACAGGAAACCAGACACACAAACCAACTTGCAAACGGATGTGA
TTTGGCATAATCTCTTGAACCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006885-exon-sc0000072-1491911889:430247..430486 | TCONS_00006885-exon-sc0000072-1491911889:430247..430486 | Clytia hemisphaerica | exon |
| TCONS_00006885-exon-sc0000072-1510915933:430247..430486 | TCONS_00006885-exon-sc0000072-1510915933:430247..430486 | Clytia hemisphaerica | exon |
| TCONS_00006885-exon-sc0000072-1575043694:430247..430486 | TCONS_00006885-exon-sc0000072-1575043694:430247..430486 | Clytia hemisphaerica | exon |
| TCONS_00006885-exon-sc0000072-1491911889:432853..433021 | TCONS_00006885-exon-sc0000072-1491911889:432853..433021 | Clytia hemisphaerica | exon |
| TCONS_00006885-exon-sc0000072-1510915933:432853..433021 | TCONS_00006885-exon-sc0000072-1510915933:432853..433021 | Clytia hemisphaerica | exon |
| TCONS_00006885-exon-sc0000072-1575043694:432853..433021 | TCONS_00006885-exon-sc0000072-1575043694:432853..433021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:430247..433021 + |
Blast
The following BLAST results are available for this feature:
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