TCONS_00069777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069777
Unique NameTCONS_00069777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069777 ID=TCONS_00069777|Name=TCONS_00069777|organism=Clytia hemisphaerica|type=transcript|length=790bp
gttgcctgatacaaaataaacagatgaatgtttatagaacaataatatct
aattaaaaaattccttctgtgaggctgcctataggaaAATACACTTTTTC
ttacccaaattttggaaaaatatacatcacgtgatcgattctgtccaata
gaaggttgcaaatgaagcaagtttttatttaattgcactttttacgatgc
aaaatgtcattaatatttttacaaccgtaacacggatgttttttgagaat
caaggcaagttggttatctattatttttacattgtTGTCTCAATTGAAGA
GTTGGGCAAATTGTGGTTATTTTTCCGGAGAAACAGTTTTTAAAAAGAAG
CAGCATTTGTGGTCACAGTTAGCACAGCACTTAGTTTGGTGGTTCGATAT
ATCTGACCAAGTCCATCCAGCATGGCGACTTGGGCTTGCAGAATGAAAAT
CTTTGATTCCACGGAGGATCTCCATCAATGTATTGAGGTCCAGTCAGTCA
ATTGGAATGCTCGAGTGGAAAATATCCTTGGGAACATCTAGGTAGATAGC
CTCTCTTACTGTAGGAGTTGTGAAGATACTGCTGAACTTTTTCCGCACCT
TGTTTTTTTGGAGTGTGAGAATCTGACTCAATGCTTCGAAGGCGTTTGGT
GATGATGGACGAGCAGTAAGCGAGAAATTCATTAGTAATTGTTGTAAAGC
ATATTGGCCGATTGAACAAATACCAAATAATTGTAGATGATGCAAATGTA
ATGTCGTTGATGGAGATGCAGCTGTTGCCattgtttattg
Run BLAST on NCBI

transcript from alignment at scaffold_507:114823..115612

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069777 ID=TCONS_00069777|Name=TCONS_00069777|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at scaffold_507:114823..115612 (Clytia hemisphaerica)
caataaacaatGGCAACAGCTGCATCTCCATCAACGACATTACATTTGCA
TCATCTACAATTATTTGGTATTTGTTCAATCGGCCAATATGCTTTACAAC
AATTACTAATGAATTTCTCGCTTACTGCTCGTCCATCATCACCAAACGCC
TTCGAAGCATTGAGTCAGATTCTCACACTCCAAAAAAACAAGGTGCGGAA
AAAGTTCAGCAGTATCTTCACAACTCCTACAGTAAGAGAGGCTATCTACC
TAGATGTTCCCAAGGATATTTTCCACTCGAGCATTCCAATTGACTGACTG
GACCTCAATACATTGATGGAGATCCTCCGTGGAATCAAAGATTTTCATTC
TGCAAGCCCAAGTCGCCATGCTGGATGGACTTGGTCAGATATATCGAACC
ACCAAACTAAGTGCTGTGCTAACTGTGACCACAAATGCTGCTTCTTTTTA
AAAACTGTTTCTCCGGAAAAATAACCACAATTTGCCCAACTCTTCAATTG
AGACAacaatgtaaaaataatagataaccaacttgccttgattctcaaaa
aacatccgtgttacggttgtaaaaatattaatgacattttgcatcgtaaa
aagtgcaattaaataaaaacttgcttcatttgcaaccttctattggacag
aatcgatcacgtgatgtatatttttccaaaatttgggtaaGAAAAAGTGT
ATTttcctataggcagcctcacagaaggaattttttaattagatattatt
gttctataaacattcatctgtttattttgtatcaggcaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043451XLOC_043451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069777-exon-scaffold_507-1491911889:114823..115612TCONS_00069777-exon-scaffold_507-1491911889:114823..115612Clytia hemisphaericaexon
TCONS_00069777-exon-scaffold_507-1510915933:114823..115612TCONS_00069777-exon-scaffold_507-1510915933:114823..115612Clytia hemisphaericaexon
TCONS_00069777-exon-scaffold_507-1575043694:114823..115612TCONS_00069777-exon-scaffold_507-1575043694:114823..115612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:114823..115612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57216	1.15998	1.60776	1.21928	2.10437	1.13418	1.67502	2.65437	1.0638	1.57528	1.03886	1.23507	1.58186	1.27401	1.86635	1.2491	1.4918	0.520333	2.70643	1.70836	3.59808	3.93058	0.940289	1.48645	1.54318	1.80435	9.15779	8.32562	5.15209	4.70958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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