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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069697 ID=TCONS_00069697|Name=TCONS_00069697|organism=Clytia hemisphaerica|type=transcript|length=875bp
ATTTTTCCTTTTAGATGAAAAATAgatcaaaaaaatagaaaatagaaaaa
tatatatgtaGAAGTCCTTGGTGCCAAATATGAGAACAGGAGGAGGTTTT
TGTCAGCTCTGTCAAAAGAAAAGAACCTTCCATAGTGGAAATGCAATCAA
ATCACCTCCAAATGACAAATTAAAGAAGAAAAGCTTTCGTCCAAGATGGC
TGGTATTATCATCAGTGGATCAATGTAGCGATTGCACCaaagatgaaaac
aaaaatgaaagtggTGATAAGGATTGTACAATGCTTTTTTATTATACAGA
CCAATCAGAATCGACGTTGAAAGGATACTTCAATCTTACGGACGCCATCA
TAGAATCAGTTGATCACATTACCGAAGATGTTCCATCCAAATATCGAGAT
TGTCCAAACATCATCCGATGGGAGCTTCCCAAACACGAGGGTCGTGTCTT
ATATACTTTACTCGAGACTCCAGAAGCAAAAGACTTGTGGTTAAAAGCAA
TTGATGAACTGAAATTTGGGTTAAAATACTGAAGAATAACTCGAGTAGAA
AACTCCCCGGCGAGTGCCCAATAATAGTTACCCGAAAGAGTGGGCTGTTT
TATTTATTAATTATCTAACTTTCATTTTGTACTAATATATAACTACAAGA
CTTTGTTTTCGATATAATAACACCTTGTATCATAATTAAATTGTAATATA
CAatagaaaaagtttattttatcCCTATATTAACCAATTATTTGACCTTA
TTTTAAACACACAAAACTtgtatctatatattaatagtataacgcgtatg
tcattttgttttctgtctgtgtgtcactttcgatttcgcaagcaatgttt
tgttcttttaaaagatgacttttgc Run BLAST on NCBI protein sequence of TCONS_00069697-protein >TCONS_00069697-protein ID=TCONS_00069697-protein|Name=TCONS_00069697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MRTGGGFCQLCQKKRTFHSGNAIKSPPNDKLKKKSFRPRWLVLSSVDQCS
DCTKDENKNESGDKDCTMLFYYTDQSESTLKGYFNLTDAIIESVDHITED
VPSKYRDCPNIIRWELPKHEGRVLYTLLETPEAKDLWLKAIDELKFGLKY Run BLAST on NCBI transcript from alignment at scaffold_506:359475..361889+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069697 ID=TCONS_00069697|Name=TCONS_00069697|organism=Clytia hemisphaerica|type=transcript|length=2415bp|location=Sequence derived from alignment at scaffold_506:359475..361889+ (Clytia hemisphaerica)
ATTTTTCCTTTTAGATGAAAAATAgatcaaaaaaatagaaaatagaaaaa
tatatatgtaGAAGTCCTTGGTGCCAAATATGAGAACAGGAGGAGGTTTT
TGTCAGCTCTGTCAAAAGAAAAGAACCTTCCATAGTGGAAATGCAATCAA
ATCACCTCCAAATGACAAATTAAAGAAGAAAAGCTTTCGTCCAAGATGGC
TGGTATTATCATCAGTGGATCAATGTAGCGATTGCACCaaagatgaaaac
aaaaatgaaagtggTGATAAGGATTGTACAATGCTTTTTTATTATACAGA
CCAATCAGAATCGACGTTGAAAGGTAAATGAAAGTATTTTTATCTtctga
aatttgttttgaaattgggttattccagaaatagtttgcaccaccaatgt
tgaggaggtgtgacgtccagggtggttttgaaaatgaaaaatttaaggGG
TTCTGGTTTTTCGAGTCAGCaaaatgaggttgaaaatccagggtggtcag
taaaacgaggtcgaaaatccagggtggtctagAAAAGTGAGAAAAATAAA
TCCAAGAGGGTCCtgaaaaactgacaaaatcAAGAGATCACCTTTCCAAA
AAATgatctcctcaacatagggggtacaatcTTTTTTTCTGTAATAGCCC
AATTATACTAATCATTCACACTGAATCAAATTAGAAACTAAAGAAAAACA
CTTACTTACATACcataaaatatttaagattgctttttaaaaatggaCAA
ATTTCCCCTTTGAAAGTATGAAAACACATAAGATATATATTCCTGAACCA
GAAAAGGAGGATTCAGGTTAACCCCCCCTTCCATAAGGATGCCTCTTATA
CCCGCTCTTATGTTAGTATCCGTCCCCTCACTTGAGTTTTTCAAAAGATG
CCCACCCTTTAACAAAGAGTTCGAactctttgttaaaaaaactaTCGCTA
GACGTTAGCAGCGGATAATATCTACTTTAAAGAGAAGTTAATGAAATGAT
TCTCCGATCACTgagctaaaaaaataagactgGATGAGATACTATGTCCT
TGCTTGGACGAGATTGAGTTGTGTCTCAAAATGGTAGCCTGAGCTGTGAA
ATTTGTTGTTAATTTTTGCTTCACAAAATAAAACTCAGCAAgtcttttcc
attttttaaaaaatttcgcgCATTTCAAGCCCTTAAACATCCACGAGTTT
CAATTCTAGTCACTTCGaaactttaaactcaatggcttTGTGGTTCTATT
CATAAGTAAAGTCCATTTAATTGCAGGATACTTCAATCTTACGGACGCCA
TCATAGAATCAGTTGATCACATTACCGAAGATGTTCCATCCAAATATCGA
GATTGTCCAAACATCATCCGATGGGAGCTTCCCAAACACGAGGGTCGTGT
CTTATATACTTTACTCGAGACTCCAGAAGCAAAAGACTTGTGGTTAAAAG
CAATTGATGAACTGAAATTTGTAAGTTGAATGTATACATTTTAAAGTGGC
TTTTAGAATCTTAGATTTGAGGAATTTTTATTAGGGAGTTTCGAGTAACG
AGTTATGTGCTGCATTTGAAACACATTACCGATTTTCAAACAGTTCTTTT
GAAGATATCGATCAACAGTGTTTTTTTaactacagtcaactctctctaat
tcgagctcAAATGGGAAATCTATTTCCTTTTGAATTATAGAGAGATTTAT
AGAACGATTCGAAAATAGAAGTTTGAATTAGCGAGAGTGCACTGTATTCT
TGGGTACCTGCCAGATAGAATAtcttaaatgaaaaagaagggTTGGAAAT
TCTTAAAAGACGTCAGGTTGGAACAATGACCTTGATATAcgctggaccaa
gtttctcaatcctggccaagcaaaatctttgataagagttttttgaaaag
tggtacctaGTGgtactactcaatagcggtgtaaatgcatcgagagcgct
agatctacatTTCCTCGAAAAcctttgatgatgtagcgccgttaagacgt
taatttttaacattgcaatggctttttTCTCAGGTACCAATTCCAATTTT
ACCATAGGGGTTAAAATACTGAAGAATAACTCGAGTAGAAAACTCCCCGG
CGAGTGCCCAATAATAGTTACCCGAAAGAGTGGGCTGTTTTATTTATTAA
TTATCTAACTTTCATTTTGTACTAATATATAACTACAAGACTTTGTTTTC
GATATAATAACACCTTGTATCATAATTAAATTGTAATATACAatagaaaa
agtttattttatcCCTATATTAACCAATTATTTGACCTTATTTTAAACAC
ACAAAACTtgtatctatatattaatagtataacgcgtatgtcattttgtt
ttctgtctgtgtgtcactttcgatttcgcaagcaatgttttgttctttta
aaagatgacttttgc Coding sequence (CDS) from alignment at scaffold_506:359475..361889+ >TCONS_00069697 ID=TCONS_00069697|Name=TCONS_00069697|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_506:359475..361889+ (Clytia hemisphaerica)
ATGAGAACAGGAGGAGGTTTTTGTCAGCTCTGTCAAAAGAAAAGAACCTT
CCATAGTGGAAATGCAATCAAATCACCTCCAAATGACAAATTAAAGAAGA
AAAGCTTTCGTCCAAGATGGCTGGTATTATCATCAGTGGATCAATGTAGC
GATTGCACCaaagatgaaaacaaaaatgaaagtggTGATAAGGATTGTAC
AATGCTTTTTTATTATACAGACCAATCAGAATCGACGTTGAAAGGATACT
TCAATCTTACGGACGCCATCATAGAATCAGTTGATCACATTACCGAAGAT
GTTCCATCCAAATATCGAGATTGTCCAAACATCATCCGATGGGAGCTTCC
CAAACACGAGGGTCGTGTCTTATATACTTTACTCGAGACTCCAGAAGCAA
AAGACTTGTGGTTAAAAGCAATTGATGAACTGAAATTTGGGTTAAAATAC
TGAATGAGAACAGGAGGAGGTTTTTGTCAGCTCTGTCAAAAGAAAAGAAC
CTTCCATAGTGGAAATGCAATCAAATCACCTCCAAATGACAAATTAAAGA
AGAAAAGCTTTCGTCCAAGATGGCTGGTATTATCATCAGTGGATCAATGT
AGCGATTGCACCaaagatgaaaacaaaaatgaaagtggTGATAAGGATTG
TACAATGCTTTTTTATTATACAGACCAATCAGAATCGACGTTGAAAGGAT
ACTTCAATCTTACGGACGCCATCATAGAATCAGTTGATCACATTACCGAA
GATGTTCCATCCAAATATCGAGATTGTCCAAACATCATCCGATGGGAGCT
TCCCAAACACGAGGGTCGTGTCTTATATACTTTACTCGAGACTCCAGAAG
CAAAAGACTTGTGGTTAAAAGCAATTGATGAACTGAAATTTGGGTTAAAA
TACTGAATGAGAACAGGAGGAGGTTTTTGTCAGCTCTGTCAAAAGAAAAG
AACCTTCCATAGTGGAAATGCAATCAAATCACCTCCAAATGACAAATTAA
AGAAGAAAAGCTTTCGTCCAAGATGGCTGGTATTATCATCAGTGGATCAA
TGTAGCGATTGCACCaaagatgaaaacaaaaatgaaagtggTGATAAGGA
TTGTACAATGCTTTTTTATTATACAGACCAATCAGAATCGACGTTGAAAG
GATACTTCAATCTTACGGACGCCATCATAGAATCAGTTGATCACATTACC
GAAGATGTTCCATCCAAATATCGAGATTGTCCAAACATCATCCGATGGGA
GCTTCCCAAACACGAGGGTCGTGTCTTATATACTTTACTCGAGACTCCAG
AAGCAAAAGACTTGTGGTTAAAAGCAATTGATGAACTGAAATTTGGGTTA
AAATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069697-exon-scaffold_506-1491911889:359475..359797 | TCONS_00069697-exon-scaffold_506-1491911889:359475..359797 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1510915933:359475..359797 | TCONS_00069697-exon-scaffold_506-1510915933:359475..359797 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1575043694:359475..359797 | TCONS_00069697-exon-scaffold_506-1575043694:359475..359797 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1491911889:360751..360944 | TCONS_00069697-exon-scaffold_506-1491911889:360751..360944 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1510915933:360751..360944 | TCONS_00069697-exon-scaffold_506-1510915933:360751..360944 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1575043694:360751..360944 | TCONS_00069697-exon-scaffold_506-1575043694:360751..360944 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1491911889:361532..361889 | TCONS_00069697-exon-scaffold_506-1491911889:361532..361889 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1510915933:361532..361889 | TCONS_00069697-exon-scaffold_506-1510915933:361532..361889 | Clytia hemisphaerica | exon |
| TCONS_00069697-exon-scaffold_506-1575043694:361532..361889 | TCONS_00069697-exon-scaffold_506-1575043694:361532..361889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_506 | supercontig | scaffold_506:359475..361889 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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