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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069484 ID=TCONS_00069484|Name=TCONS_00069484|organism=Clytia hemisphaerica|type=transcript|length=1892bp
CAAAGAGGAAGTTGAATCACGTCTTCTCGAGCTACATTACCATCAAATAC
ATTCAGCACTTCCGAAATGTGATGACCCAGCTTGCAGTGGTCGAGTACGG
AggtttaaaaatttgaatagcGTAGAACAACATAAAGCAGCATTGTCTAG
CCATCGTggtatttcttatatttctgtTTCTGTCGGTTTCTGTGGTGTTT
CTCGGAAAAAGCTGAAGAGTACAAAAGCTGCGAGAAAACATCAAAACGAC
TCTTCCAAGCATGCGATATGCGATCATGCAGAATGCCGAAacaaaaacag
aatttttaGTAATCGAGCAGCCATGGAGTCACATAAAAAAGACAAACATA
GGTCATCAAACTTAACAAATCAGAACCGTCTATCACCACAAAATgtccaa
aaaaggaaaatggcGAAAGTTCTTTTGAGTTACTACGAGAAGGAAGTTTT
ACCCTCAACTGAAGACAGAAAGAGGTCAAAAAGTCTAGCGAGAGATCACA
TTCTACAAgagcttttgaaaaacttatctGACCCAGATGATAGAAATTTG
TACAAGGGTTCACTGGAAAAAGCTGGCAGCACTTCaacaaataccaaaat
caaccTTGCTGACGAGTTCGATTTTGACTTGCATTTGAATATCAGAAGCT
TCTCTTTGGACAGAAAATTTCTTCGTTACAAATTTACTGCGGATGACGAT
ACCACAAGCTTGAATGTGCAGAAATCAGTTGTAATGTTGAATGCGAATGC
GAAAGAGCCCTTACCAAAAGGATTCATTCAAATCAAATCGGATCAAGCAC
CCGGTAAATTAAGGGTTGGAGAACATCTTGCTCCGAGACGGATACATGAA
GATTTGTACAGAAAATTGAGCAACTTGAAGAAGGACGTTCCCCAAATCAA
AGATGTGAGCATCCAAAAAAAGCCTCATGGTCCTGCAATCACATTGACAT
ATCACAAGCCAGGCGAGCACCACATCGACATCGACCTCTCACCATCTCTA
TTCACCAACGACATCGAAGTTCCAGAAAAGGTTTGgaaaaggaaattttt
caaGACAAATCCCAAAGTAACAAGTATGCTCAAAAATGTGCCCATCCTTT
TGGTtccaaaagaagaaaattgcTGGTTGATTTCTTATGAGAAAATCATG
AAAGAGCTGTTCAACAGAATTGACGGCGAGGGGACATGCAGGAAAATTTG
CCACATGATTCTTAAGTACGATATTTTGAAGTGGAAATCACAAGATAAAG
AGGGATTTGAAGGAATGTCGACAAATCCAATAAAGCACCACCTTTTATGG
TTCAATGATCAACATCCAGACGATGAATATTGGTCAACTAGAAATTTAGC
AAGATGCTTCAAAGCCATGTTGGAAGATTTGGAGAGTAGAATACGCCAGA
GAGAAATCTTAAATTATTTTGACGACAAAACCAATTTATTGGCAGGGAAA
GATTCCGAAATGTTGAACCGTTTCGCTGACCGTCTGCATGATCGCAGAGC
TGAGGTCCAACGACTTAAGAATTTATGATTATAAAAACTATTCATTCAAA
CCTGAACCTATGACTAATACTAAACCTGGAGAATCTGATTTACTGTAATC
TTTTCACAACTTAATGTTAGTATAAATGTCTCCtagattttcaagttttt
ggcACAGACTTGTAGTAACTattattttcacgattttattttttttttcg
cacCAAAATAAAACCACTGTGTCTCACCAGACATGggttttaaaaaataa
tgaaccAGGCCTAAATTTTGTACAACTTCTTTTCCACGTTAAGCTTTCAG
TTTATCCACTCCAGATAATTTTCAAGCACGCTGTGATAGCAACCACCGAT
TTTATCCAACCCGCACTCagcaaaaacaaaagtaaacattgc Run BLAST on NCBI transcript from alignment at scaffold_500:90080..95345- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069484 ID=TCONS_00069484|Name=TCONS_00069484|organism=Clytia hemisphaerica|type=transcript|length=5266bp|location=Sequence derived from alignment at scaffold_500:90080..95345- (Clytia hemisphaerica)
CAAAGAGGAAGTTGAATCACGTCTTCTCGAGCTACATTACCATCAAATAC
ATTCAGCACTTCCGAAATGTGATGACCCAGCTTGCAGTGGTCGAGTACGG
AGGTTTAAAAATTTGAATAGCGTAGAACAACATAAAGCAGCATTGTCTAG
CCATCGTGGTATTTCTTATATTTCTGTTTCTGTCGGTTTCTGTGGTGTTT
CTCGGAAAAAGCTGAAGAGTACAAAAGCTGCGAGAAAACATCAAAACGAC
TCTTCCAAGCATGCGATATGCGATCATGCAGAATGCCGAAACAAAAACAG
AATTTTTAGTAATCGAGCAGCCATGGAGTCACATAAAAAAGACAAACATA
GGTCATCAAACTTAACAAATCAGAACCGTCTATCACCACAAAATGTCCAA
AAAAGGAAAATGGCGAAAGTTCTTTTGAGTTACTACGAGAAGGAAGTTTT
ACCCTCAACTGAAGACAGAAAGAGGTCAAAAAGTCTAGCGAGAGATCACA
TTCTACAAGAGCTTTTGAAAAACTTATCTGACCCAGATGATAGAAATTTG
TACAAGGGTTCACTGGAAAAAGCTGGCAGCACTTCAACAAATACCAAAAT
CAACCTTGCTGACGAGTTCGATTTTGACTTGCATTTGAATATCAGAAGCT
TCTCTTTGGACAGAAAATTTCTTCGTTACAAATTTACTGCGGTAAGATTT
TTATCCCTCGACTTTCTCTGGTTTAAAACTAGTCAATACATATATGATGA
GCCCTAGTGAGTTTATACGTCCACTATCTTTGACGACGGAGGAGGGACCG
AAACGATTTGGGATAATTCAAAGCTTTGACCTGTAATATAGATTGGCAAA
CTATTAATCATTAAAGGGCGGGAATCAAAGGGTATTTGCTAAAATCGGAG
CTGTGTAGTAAAGACAGCTTTATAAAAAGCTGGCGGAGAGAGAGAGAGAA
GAAAAGATCAACTCCTTCCGTCAAAAGATTTTTCTCCCTACGCTTATTCC
TATTCACATCATCTCGCGTGATATTGTTCCAAGCGGATTGACGTGCCAGT
CTTATCCAGAATACCTGAATATGTCTCAATGATTTACTGTCATTCAAAGT
CGTTCAGGAACAGAAAAAGTAAAAATATAAACCATTATTGGCGCAAAAAT
CATGACTTAAATTCGCCAATATTTGTTTTGTTTGGACTGAGATTCAGATG
GGAAAATGAAAGAGATTTGGAAAACATAAAAACCCATCGACGTTTATAAA
CTCATGTTTCATTAGTTTGTGTATACATTGATTCAATACAAAAGGATGAT
TTGATATTTTCAGGATGACGATACCACAAGCTTGAATGTGCAGAAATCAG
TTGTAATGTTGAATGCGAATGCGAAAGAGCCCTTACCAAAAGGATTCATT
CAAATCAAATCGGATCAAGCACCCGGTAAATTAAGGGTTGGAGAACATCT
TGCTCCGAGACGGATACATGAAGATTTGTACAGAAAATTGAGCAACTTGA
AGAAGGACGTTCCCCAAATCAAAGGCTCAGGCAAGTTAAGGCCTGTGCAA
AAAATTCAATAAATCGTGACGGTCGTGACGGCCAGTTGTTCCACCCCTTT
TGATGGGAAAATTTCTCGTTTTTTTCACTCTTCATATTAATACCTTTCCA
AAAAGTCCTGGGCCAAAAATTCTGCCATTTTGGGAAATTTAAGGCAAAAC
ACTTTTTGCTGACGTCAGCAAAAATTTGAAACACTAATATCTCCTGGAAT
ATTTATCCAAATGAACTGAAATTTGGTACGAAGGTAGAGTGGATAAATGT
CTTTCATTTCCAAAAGAAAATTTTTAAAAAAATTGATGACGTCAGCAAAA
ATCAGCAATTTTCGTTTTTCCTAAAGAATTGCTGACGTCATCAATTTTTT
GGAAAATGTTCTTTTGAAAATAAAAGATATTTATGAACTCTACCTTCGTA
CCAAATTTCAGTTCATTTGGATAAATATTCCAGGAGTTATTAGCAATTTA
AATCTTTGCTGACGTCAGCAAAAAGTGTTTTTCCTTAATTTTCCCAAAAT
GGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTGTTGGATTTTTGTGTTGGTTGCCATGGAAATGACGGATATTTT
TGACGTCAAAACTTAAAATGCCAATAATTCCTGGAATTTTTATCGAAATG
AGCTCTAATTTTGTACATAGGTAGGGTTCATAAATATCTTTCATTTCCAA
AAAATATTCTTCCTAAAAATTGATGACGTCAGCATTTTTTGAGAAAAAAG
GAAAATTGCTGGTTTTTGCTGACGTCATCAATTTTTTGAGAATTTTTTCG
GAAACGAGAGATATTTATAAACCCTACCTTCGTACCAAATTTGAGCTCAT
TTGGATTAATATTCCAGGAGTTATTAGCAGTTTAAATTTTTGCTTACGTC
AGCAAAAAGTGTTTTTCCTTAATTTTACCAAAATGGCTGAAACACAATTT
TCGGCCCAGGACTTTTTGAAAAGGCATTAATATGACGAGTGAGAAAAACC
AAAAAATTTTCCCGAAAAGGGGGTGGAATAACTGGCCGTCACGCATTATT
TGATTCGTTAATTTTTTGCACAGGCCTTAACTTGCCCGAGGGTATTTTAA
ATTTTCCATTTCTGTCATTTCTTAACATTTGGATTTGGGTCTTTGTTGCT
ATAAAATAAGATCTAAATATACTATACAGAATCCATCCCACCAAATATCG
AATTTGATTTCACTCCTGGCGAAATATATAGTTTAGTTAGGGTTGAGGGT
TTGAATTTCCCAGATCCTAATGGCAGTTGAAAACACAGCCAATCAAATTC
TGTTATTCTTTCACTGGTGATACTTTCTTAGAGAAAACGCAAGTTCCGAA
ATTTTATTTGTATTTTTGTAAGTGAGGACAGCAATAAATTCGAATTTCCC
ACTGTAAATTGTTTGAGGCAGATTTGTACCTCACATCATGTACCCGTCCT
GTATATATCAGATTATAAAAATACAGGACGGGTCTCCTGTCTAAAGTGAC
CTAGAAAAGGAATTGAGAAAACAAATGCTAGACCAGGTGTTTTCAGAATA
CACTTTCTTTATATATTGAATTCTACTTTAGATGTGAGCATCCAAAAAAA
GCCTCATGGTCCTGCAATCACATTGACATATCACAAGCCAGGCGAGCACC
ACATCGACATCGACCTCTCACCATCTCTATTCACCAACGACATCGAAGTT
CCAGAAAAGGTTTGGAAAAGGAAATTTTTCAAGACAAATCCCAAAGTAAC
AAGTATGCTCAAAAATGTGCCCATCCTTTTGGTTCCAAAAGAAGAAAATT
GCTGGTTGATTTCTTATGAGAAAATCATGAAAGAGCTGTTCAACAGAATT
GACGGCGAGGGGACATGCAGGAAAATTTGCCACATGATTCTTAAGTACGA
TATTTTGAAGTGGAAATCACAAGATAAAGAGGGATTTGAAGGAATGTCGA
CAAATCCAATAAAGGTTAGTTTAATTCCCAAATGTTTAAACAGGTAGAGC
TTTTGTCTTTGCTAAGCAAGACAGCATGAGTGAGCCCTGGTCGGTTCCGC
GGTAGGACTTGAACGATGGTACTTTACATCTTTTCATCTTAAACCACTTA
GTACACTCCTGCCTTAGTGGGTTGCAGCCGTTTGAAAATCCGCCGAGGTA
AATATGAAAATAGTAAGGTTTCAAATCTCAAAATTTCACTGAGGTGAACT
ATAAAAACCTATGTTTTAATTATAAGTAGGGACAAAATTTCATCTTGGTA
ATGTGATTAGGGACCTGTGTGTAGGATAATAAATGTTTGCCCGGGATGGA
CAATTTCGCTTAATTTTGATGGCTCATATATAACACTACTGGGCCTTAAA
ATTGGATTCTGATTTGTTGAAGGCTCACTGGTGATACATGGATGGGTGTG
TTTGGTAATAGTGTGTAAGGGTATTCATGAGTAGTACCCTCCCGTAACTT
CGGACAGATATTATTTAAAAATGATGCATCGAGTGGCCTCCAAATGCGAT
ATATTGAATATTTACTTATTTCATTATCTCTCCTTACATTTGCTGAAGCA
GCCTCTATAACCCACTCGTTGGCCAACCGTTTAACTACAACTTTTTCATT
TACTTCCAGCACCACCTTTTATGGTTCAATGATCAACATCCAGACGATGA
ATATTGGTCAACTAGAAATTTAGCAAGATGCTTCAAAGCCATGTTGGAAG
ATTTGGAGAGTAGAATACGCCAGAGAGAAATCTTAAATTATTTTGACGAC
AAAACCAATTTATTGGCAGGGAAAGATTCCGAAATGTTGAACCGTTTCGC
TGACCGTCTGCATGATCGCAGAGCTGAGGTCCAACGACTTAAGAATTTAT
GATTATAAAAACTATTCATTCAAACCTGAACCTATGACTAATACTAAACC
TGGAGAATCTGATTTACTGTAATCTTTTCACAACTTAATGTTAGTATAAA
TGTCTCCTAGATTTTCAAGTTTTTGGCACAGACTTGTAGTAACTATTATT
TTCACGATTTTATTTTTTTTTTCGCACCAAAATAAAACCACTGTGTCTCA
CCAGACATGGGTTTTAAAAAATAATGAACCAGGCCTAAATTTTGTACAAC
TTCTTTTCCACGTTAAGCTTTCAGTTTATCCACTCCAGATAATTTTCAAG
CACGCTGTGATAGCAACCACCGATTTTATCCAACCCGCACTCAGCAAAAA
CAAAAGTAAACATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069484-exon-scaffold_500-1575043694:94655..95345 | TCONS_00069484-exon-scaffold_500-1575043694:94655..95345 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1575043694:93822..94032 | TCONS_00069484-exon-scaffold_500-1575043694:93822..94032 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1575043694:91332..91714 | TCONS_00069484-exon-scaffold_500-1575043694:91332..91714 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1575043694:90080..90686 | TCONS_00069484-exon-scaffold_500-1575043694:90080..90686 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1510915933:94655..95345 | TCONS_00069484-exon-scaffold_500-1510915933:94655..95345 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1510915933:93822..94032 | TCONS_00069484-exon-scaffold_500-1510915933:93822..94032 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1510915933:91332..91714 | TCONS_00069484-exon-scaffold_500-1510915933:91332..91714 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1510915933:90080..90686 | TCONS_00069484-exon-scaffold_500-1510915933:90080..90686 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1491911889:94655..95345 | TCONS_00069484-exon-scaffold_500-1491911889:94655..95345 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1491911889:93822..94032 | TCONS_00069484-exon-scaffold_500-1491911889:93822..94032 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1491911889:91332..91714 | TCONS_00069484-exon-scaffold_500-1491911889:91332..91714 | Clytia hemisphaerica | exon |
| TCONS_00069484-exon-scaffold_500-1491911889:90080..90686 | TCONS_00069484-exon-scaffold_500-1491911889:90080..90686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_500 | supercontig | scaffold_500:90080..95345 - |
Blast
The following BLAST results are available for this feature:
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