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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006872 ID=TCONS_00006872|Name=TCONS_00006872|organism=Clytia hemisphaerica|type=transcript|length=1092bpRun BLAST on NCBI transcript from alignment at sc0000072:197871..230715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006872 ID=TCONS_00006872|Name=TCONS_00006872|organism=Clytia hemisphaerica|type=transcript|length=32845bp|location=Sequence derived from alignment at sc0000072:197871..230715+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006872 vs. Swiss-Prot (Human)
Match: KRI1 (Protein KRI1 homolog OS=Homo sapiens GN=KRI1 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 7.590e-26 Identity = 134/335 (40.00%), Postives = 196/335 (58.51%), Query Frame = 2
Query: 176 LSINKAFAKKYQKFKECQELDKLKAKYGDVAIXXXXXXXXXXXXXAEALTPQLEEDFLKTLAMIKSKDPKIYDKASEFYHK---STENGSTTSTNXXXXXXXXXXXXDYERKRLLEKGSKAYISDSDSDDERAGPSSRYVENKNPSELTYNEEQAEIKKSFKX------XXXXXXXXXXXXXQVRXXXXXXXXXXXXXXXXWIK--KEGRDLDSLGS------FWKSKDLNEDDQFLRDYILNRKF--------------VNEGESLPSYKDIVGDSSGXXXXXXXXXXXXXXXXXXXXXXXXXXPDQEFIKRFPRTIAESVRRTDDSRKQKRKE 1087
L +N AFA +Y +++E +EL +LK +YGD SSS + D+ PQ E DF KTL+++K KDP+IY K + FY++ S+++ + +KK +PM LKDYERK +LEK K Y+ + +SD E + + R E S +Y EEQ ++K+SF+ ++ E LLQ R KT+QE+ EE DY +W+K KE R+ DSL +W +L+E ++FLRDYILN+++ EG P + V DSS +E E L K+E+FE+K+NFR+EEPD +K +PR+IA SVRR D+ RK+KR+E
Sbjct: 10 LRVNAAFAARYNRYREREELQRLKDRYGDRDSSSDSSSESDSSDERVEFDPQQERDFYKTLSLLKKKDPRIYQKDATFYNRTASSSDSEEDPEALEKQKKVRPMYLKDYERKVILEKAGK-YVDEENSDGETS--NHRLQET---SSQSYVEEQKQLKESFRAFVEDSEDEDGAGEGGSSLLQKRAKTRQEKAQEEADYIEWLKGQKEIRNPDSLKELTHLKEYWNDPELDEGERFLRDYILNKRYEEEEEEEEDEEEMEEEEGVHGPPVQLAVDDSS----DEGELFLKKQEDFEQKYNFRFEEPDSASVKTYPRSIASSVRRKDERRKEKREE 334 The following BLAST results are available for this feature:
BLAST of TCONS_00006872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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