TCONS_00069354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069354
Unique NameTCONS_00069354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069354 ID=TCONS_00069354|Name=TCONS_00069354|organism=Clytia hemisphaerica|type=transcript|length=608bp
ATTCGAGCAAACAAATAGTTTTCCataaaagaaacaaacaaaatggcgtt
CATTTCAAACAAGGTGACAGGCTACGCATGCGTACTGGCCATCTTGTTAG
CGATTTCAGCATGTGCTTCGTTGGTGCTTGGCTTTATGAATCTTGGAACA
TTCCATTCTTCCGAAGTGAAATCACATGTGGGAATATGGCTTGGCCTTAT
TATGTTCATCAATATTTTCACATTGTTATTGGTGATGGGAACTAGAAGAT
TCATGGTTCTTTCCTCCTCCTTTATCATCAGTATTTTTTGTCTTGGTGTA
TGTATAGTCGCCATTGTTTTCGCTATTGATTATCGTAATGAGTTTGAAAG
ATTCGGTAATTTGAATCGCCAACAAGTTACCGGAAGCTACTGCGAAAAAC
CCACTACAGATGATCAGTGCATTTGCTATGAAAATCAAGTACCACAACAA
TTCAAGGATGGATTCAAATTTCAAGCATGTCCACTCATCCACACCGGGGA
AGATATGTGGCTAGCAATGATAGTACTGGCTGCAATAAACGCATTCTTTT
CATTGGGAGGTCTATTGTTGTTCATTGTTGGCGCatgtcaaaaaaaaaga
gaggTAAA
Run BLAST on NCBI

protein sequence of TCONS_00069354-protein

>TCONS_00069354-protein ID=TCONS_00069354-protein|Name=TCONS_00069354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MAFISNKVTGYACVLAILLAISACASLVLGFMNLGTFHSSEVKSHVGIWL
GLIMFINIFTLLLVMGTRRFMVLSSSFIISIFCLGVCIVAIVFAIDYRNE
FERFGNLNRQQVTGSYCEKPTTDDQCICYENQVPQQFKDGFKFQACPLIH
TGEDMWLAMIVLAAINAFFSLGGLLLFIVGACQKKREV
Run BLAST on NCBI

transcript from alignment at scaffold_498:273076..276274-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069354 ID=TCONS_00069354|Name=TCONS_00069354|organism=Clytia hemisphaerica|type=transcript|length=3199bp|location=Sequence derived from alignment at scaffold_498:273076..276274- (Clytia hemisphaerica)
ATTCGAGCAAACAAATAGTTTTCCATAAAAGAAACAAACAAAATGGCGTT
CATTTCAAACAAGGTGACAGGCTACGCATGCGTACTGGCCATCTTGTTAG
CGATTTCAGCATGTGCTTCGTTGGTGCTTGGCTTTATGAATCTTGGAACA
TTCCATTCTTCCGAAGTGAAATCACATGTGGGAATATGGCTTGGCCTTAT
TGTAAGTATATTAAAAGACCAACTTCATAAGAACATTAAGCTCAATTTCA
ATCAAAATCTTAAGAAAAATACCATGAAAATTATATTTCAGCATAAATAT
TAAAAGCATCTCAAGTTTATTTTGATTGTGTCCAAGATATTTTTTCACCG
ACTATTAGTTTATTCTATTAGTTTTAAACTTTAGGCTCCAAGCTAAAATT
ACATGTGTATGCCAAGAGTGTTAGAAACATTTACTTGGGAAAAACTAAAA
CCTAATATTATTCTCTATTTCCCGGGCCTGTAGGGATCATCGGCCTGAAA
TGGTTAGGATCAAAACAACCTGGGTCATAAGGGCAACTAACTACGAATCA
GCAAAGTTCTTTTCAAAAATTAAAAAAAAGTCTTATGAGAATTCACTTCA
ATAGCGTTAACTTGCTTTACTCGCGGGAGTTTGATCGGGCTGGAAGCTTA
ATACAGTAAAAATGAAAAAAATCATTTCTATTGGCTGGCATTTGAAATCA
ACATCTAATTTGAAATCCAATTCTTTATCATCATTAGCTCCAATCATATT
CGGAATATATTGAGATTTTAGTGTATTTTAACGCTTTTCCAGAATTCAAA
GTTCGGGCGAGAATTAGTATTTTAGTACTTCCACTTTATTTCATTGAATA
TTTCGATTTTAGAGGGTCCGGTTTGGCTTCTAGGCTATATTCCAATCCTT
ATTGGAGCAAATTTGAGCTTTTAAATCCTGAGATCTTAAGGTCCTAAGTT
TTAAGTCTCAGTCAAAACTCTACTTTCCAACTGTAGTTTAACACGCTTAA
AAATCATTCGTTGTGTTTTAAAATTTCGCAGGGAGATCCCCTTTGTCTCA
AATGTTTCGTCCATGATTGTCTCATTTTTAACAATACGAGCTTCTGCGGA
CTCATTTTTCCTCTCCGTAAATTTCTAGCCTTGATGTTATTCTTTGAGCC
AATCAAATTGCTTTTTACTTTTTTCTGTTAACCCTGGTCCACAACAGATG
TAGAGTATTAAAATATTTCTCCTTCTCTTTCAGATGTTCATCAATATTTT
CACATTGTTATTGGTGATGGGAACTAGAAGATTCATGGTTGTAAGTGTTT
TATTGAGCATTTTTATTTGGTCTTTGGGTTTTGAAATAAGGGACATGTTT
AAAGGTCCCAAACTTATACCTAAAAATGTTTTGACTCGAGAATACATCAA
TTCATTAGATTGTGGCATTGTTGCGGCAAATCCCGAATCGAAATTATCTT
CTTCTGAGCATCGTCTACTTGAATATTGAACGTCCTGCAAAAAGACCAAA
AAAAGTCAAACTTAGTTCTGGAGAAAGGGAAAACAGGCCAGGTTATTGGG
CTTATCCATTAAAAATCTATAGAAACCTTTTCAAGTCAAAATAAAACTGT
TGGAAATGTGAGGATACCCCCTGGAAAGTGACAAAATTTGCAAAGAAGAA
ACCCTTGGAAAAAATTAGTTTAATACTTCAAAGTGACGGGGAACGAACAA
AAACTTGTCTTTTACCCCTTGGAAATTTTAGAATAACTTTTCACCCCCTG
GAAAATGAAAAAAACACTCTGAAAATGTTCGTCACCCCCCTGTATGGAGA
TGAAATAGAATGGCCCGTTGATTTTGCGGAGTACTGAGCATTCAAATATG
CCTACTCCATTTTTTTATATTCATTGACAATACATCATCATGACACCGAG
AACAGTAGATAGGACGTTAATGAAAGCTAGGACTCTTATTTTATTTTACG
TTCAAGTTTTTAAAGAGATTATGATTCCTTGTGCCAAAACACCACCCCGC
CCTCGGAAACGGGTGTAAACGATGGGAAAAATGATGTAATCTTGACACTA
CTCACACTCTAATTTTTTTTGTTTTCCTTTTAGCTTTCCTCCTCCTTTAT
CATCAGTATTTTTTGTCTTGGTGTATGTATAGTCGCCATTGTTTTCGCTA
TTGATTATCGTAATGAGTTTGAAAGATTCGGTAATTTGAATCGCCAACAA
GTTACCGGAAGCTACTGCGAAAAACCCACTACAGATGATCAGTGCATTTG
CTATGAAAATCAAGTACCACAACAATTCAAGGATGGATTCAAATGTAAGA
ATATAGATATTTATATAAAGTCTGTTAAAAAAATATTTGTCTATCGATAA
ATTGCTCTTAAAGGTAATTTTGAGCAGATTATCTTAAAACTTTAAATATT
TGTTTTCCCGTTTTCAACCATTTTCAGCTTATCGCTACTATGTACTTCCT
AGATTTGATAGCACTCAAGAGAAATTTTTACACTTCCTTCTCCGAAATCA
TAAAGTTTTCTATCCTAGGAAGTTTTTTCTGAAGCCATCGCTGAGTCTAC
TCTTTTCAAAGAAAGTTAGTACCATCAAAGTCTCTTTCGAATGTCATAGT
TGCAATTGAGGTCTCCCAGTAAACGCCCTACGGTCTGATTTAAAACTGAT
AGACCTAGTTTCTGTGATAAGGGATACTCTCAAGAAACTTCAGAAGTTTT
CTCACAATAGCTTTACATCTTAGATTGACCAATCACTTATTACAGATTTG
CTTCAAAAAGATATGTTAACACTGTCAACCCCTTTTCAGAAATCAAAAAT
TTTACATCGTTGAATTTTGTCAAATTCTTTACTTCAAAGGCACCTGTGGC
CTGAGTATTGCTTTAAATATCTTCAAAAAACAAACAGATTTACGGTAACC
AATATTATAGCCGTGTTAAGTAGATTAAATTCAAGTTTACGGATAACTAT
TAGCAAACATCAAATATTTTAGATTTATGGTAATGACCCTTTGCGGCCCT
GGTAAAATCTCTACTAATCCTCTTTTGGTTTGATATGAGTATTACTTTTC
CTGCTTTTAGTTCAAGCATGTCCACTCATCCACACCGGGGAAGATATGTG
GCTAGCAATGATAGTACTGGCTGCAATAAACGCATTCTTTTCATTGGGAG
GTCTATTGTTGTTCATTGTTGGCGCATGTCAAAAAAAAAGAGAGGTAAA

Coding sequence (CDS) from alignment at scaffold_498:273076..276274-

>TCONS_00069354 ID=TCONS_00069354|Name=TCONS_00069354|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_498:273076..276274- (Clytia hemisphaerica)
TTCAAGCATGTCCACTCATCCACACCGGGGAAGATATGTGGCTAGCAATG
ATAGTACTGGCTGCAATAAACGCATTCTTTTCATTGGGAGGTCTATTGTT
GTTCATTGTTGGCGCATGTCAAAAAAAAAGAGAGGTACTTTCCTCCTCCT
TTATCATCAGTATTTTTTGTCTTGGTGTATGTATAGTCGCCATTGTTTTC
GCTATTGATTATCGTAATGAGTTTGAAAGATTCGGTAATTTGAATCGCCA
ACAAGTTACCGGAAGCTACTGCGAAAAACCCACTACAGATGATCAGTGCA
TTTGCTATGAAAATCAAGTACCACAACAATTCAAGGATGGATTCAAATAT
GTTCATCAATATTTTCACATTGTTATTGGTGATGGGAACTAGAAGATTCA
TGGTTATGGCGTTCATTTCAAACAAGGTGACAGGCTACGCATGCGTACTG
GCCATCTTGTTAGCGATTTCAGCATGTGCTTCGTTGGTGCTTGGCTTTAT
GAATCTTGGAACATTCCATTCTTCCGAAGTGAAATCACATGTGGGAATAT
GGCTTGGCCTTATTTTCAAGCATGTCCACTCATCCACACCGGGGAAGATA
TGTGGCTAGCAATGATAGTACTGGCTGCAATAAACGCATTCTTTTCATTG
GGAGGTCTATTGTTGTTCATTGTTGGCGCATGTCAAAAAAAAAGAGAGGT
ACTTTCCTCCTCCTTTATCATCAGTATTTTTTGTCTTGGTGTATGTATAG
TCGCCATTGTTTTCGCTATTGATTATCGTAATGAGTTTGAAAGATTCGGT
AATTTGAATCGCCAACAAGTTACCGGAAGCTACTGCGAAAAACCCACTAC
AGATGATCAGTGCATTTGCTATGAAAATCAAGTACCACAACAATTCAAGG
ATGGATTCAAATATGTTCATCAATATTTTCACATTGTTATTGGTGATGGG
AACTAGAAGATTCATGGTTATGGCGTTCATTTCAAACAAGGTGACAGGCT
ACGCATGCGTACTGGCCATCTTGTTAGCGATTTCAGCATGTGCTTCGTTG
GTGCTTGGCTTTATGAATCTTGGAACATTCCATTCTTCCGAAGTGAAATC
ACATGTGGGAATATGGCTTGGCCTTATTTTCAAGCATGTCCACTCATCCA
CACCGGGGAAGATATGTGGCTAGCAATGATAGTACTGGCTGCAATAAACG
CATTCTTTTCATTGGGAGGTCTATTGTTGTTCATTGTTGGCGCATGTCAA
AAAAAAAGAGAGGTACTTTCCTCCTCCTTTATCATCAGTATTTTTTGTCT
TGGTGTATGTATAGTCGCCATTGTTTTCGCTATTGATTATCGTAATGAGT
TTGAAAGATTCGGTAATTTGAATCGCCAACAAGTTACCGGAAGCTACTGC
GAAAAACCCACTACAGATGATCAGTGCATTTGCTATGAAAATCAAGTACC
ACAACAATTCAAGGATGGATTCAAATATGTTCATCAATATTTTCACATTG
TTATTGGTGATGGGAACTAGAAGATTCATGGTTATGGCGTTCATTTCAAA
CAAGGTGACAGGCTACGCATGCGTACTGGCCATCTTGTTAGCGATTTCAG
CATGTGCTTCGTTGGTGCTTGGCTTTATGAATCTTGGAACATTCCATTCT
TCCGAAGTGAAATCACATGTGGGAATATGGCTTGGCCTTATTTTCAAGCA
TGTCCACTCATCCACACCGGGGAAGATATGTGGCTAGCAATGATAGTACT
GGCTGCAATAAACGCATTCTTTTCATTGGGAGGTCTATTGTTGTTCATTG
TTGGCGCATGTCAAAAAAAAAGAGAGGTACTTTCCTCCTCCTTTATCATC
AGTATTTTTTGTCTTGGTGTATGTATAGTCGCCATTGTTTTCGCTATTGA
TTATCGTAATGAGTTTGAAAGATTCGGTAATTTGAATCGCCAACAAGTTA
CCGGAAGCTACTGCGAAAAACCCACTACAGATGATCAGTGCATTTGCTAT
GAAAATCAAGTACCACAACAATTCAAGGATGGATTCAAATATGTTCATCA
ATATTTTCACATTGTTATTGGTGATGGGAACTAGAAGATTCATGGTTATG
GCGTTCATTTCAAACAAGGTGACAGGCTACGCATGCGTACTGGCCATCTT
GTTAGCGATTTCAGCATGTGCTTCGTTGGTGCTTGGCTTTATGAATCTTG
GAACATTCCATTCTTCCGAAGTGAAATCACATGTGGGAATATGGCTTGGC
CTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043219XLOC_043219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069354-exon-scaffold_498-1575043694:276074..276274TCONS_00069354-exon-scaffold_498-1575043694:276074..276274Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1575043694:274985..275041TCONS_00069354-exon-scaffold_498-1575043694:274985..275041Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1575043694:273981..274191TCONS_00069354-exon-scaffold_498-1575043694:273981..274191Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1575043694:273076..273214TCONS_00069354-exon-scaffold_498-1575043694:273076..273214Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1510915933:276074..276274TCONS_00069354-exon-scaffold_498-1510915933:276074..276274Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1510915933:274985..275041TCONS_00069354-exon-scaffold_498-1510915933:274985..275041Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1510915933:273981..274191TCONS_00069354-exon-scaffold_498-1510915933:273981..274191Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1510915933:273076..273214TCONS_00069354-exon-scaffold_498-1510915933:273076..273214Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1491911889:276074..276274TCONS_00069354-exon-scaffold_498-1491911889:276074..276274Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1491911889:274985..275041TCONS_00069354-exon-scaffold_498-1491911889:274985..275041Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1491911889:273981..274191TCONS_00069354-exon-scaffold_498-1491911889:273981..274191Clytia hemisphaericaexon
TCONS_00069354-exon-scaffold_498-1491911889:273076..273214TCONS_00069354-exon-scaffold_498-1491911889:273076..273214Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069354-proteinTCONS_00069354-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_498supercontigscaffold_498:273076..276274 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.173415	0	0	0	0	0	0	0.149857	0	0.0900845	0.118436	61.5602	74.8624	0	0.0541833	0.0667494	0.410496	121.081	165.474	0.343879	0.125799	0	0.0926874	0.0954659	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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