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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069334 ID=TCONS_00069334|Name=TCONS_00069334|organism=Clytia hemisphaerica|type=transcript|length=2604bpRun BLAST on NCBI protein sequence of TCONS_00069334-protein >TCONS_00069334-protein ID=TCONS_00069334-protein|Name=TCONS_00069334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp MWTFCLTFLGCSFFLVAGLPAQGIREEGDDDDVETIKVSVVLNSKNDLEIRun BLAST on NCBI transcript from alignment at scaffold_498:226456..244140+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069334 ID=TCONS_00069334|Name=TCONS_00069334|organism=Clytia hemisphaerica|type=transcript|length=17685bp|location=Sequence derived from alignment at scaffold_498:226456..244140+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_498:226456..244140+ >TCONS_00069334 ID=TCONS_00069334|Name=TCONS_00069334|organism=Clytia hemisphaerica|type=CDS|length=15174bp|location=Sequence derived from alignment at scaffold_498:226456..244140+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00069334 vs. Swiss-Prot (Human)
Match: PLBL2 (Putative phospholipase B-like 2 OS=Homo sapiens GN=PLBD2 PE=1 SV=2) HSP 1 Score: 493.426 bits (1269), Expect = 1.488e-163 Identity = 256/553 (46.29%), Postives = 347/553 (62.75%), Query Frame = 1
Query: 406 LVAGLPAQGIREEGDDDDVETIKVSVVL--NSKNDLEIKDGIVKPFVAYAAFKNSVNQTGWSMLTLSTNGSFDDELQAQAAGMAEGYISADHIMMYFNATAAGYCAA---DSAFCTTLQNYIDTNDKWIQDNLKSNKNDPYWNHVNLVNKQIEGMVSGYEASKMMPA----MSLFDFKLLNLFGDLEDLEQALKKKNLKKVLGSGSCSALIKLFPNNAELAISHVTWNDFNAMLRIYKRYNMSLHSHPGQESGVIPGHLQSFSSYPGVVYSGDDFYILSSGLVTQETTIGNSNNDLWKHVVPQ-TVFEFVRTVVANRLAPTGGRWAELFERHNSGTYNNQWMILNYNLFTPGKPLQPDT--LWILEQLPGTVHMADMTMFLVDHGYWPSFNVPYFPYIYNISGVTAAKEKYGSWFDYDLNPRSQIFKRDHEKVVDMQTLVKLMRYNDFKNDPIAKCN-CTPPYSGENAISARSDLNPANGTYPFGALGHRRHGGTDCKATNSRMAQTFSQFIVAGPTFDQQPPFKWSDTEWKKPL--GLPDEFKFEPALLDWN 2019
L +PA G R D + VL S L + DG VA+A N++ +TGW+ L L T+G ++D LQA AAG+ E +S + I M++ T YC + +C L+++++ N +W+Q+ ++SN + PYW+ V L Q++G+ YE PA + F LL L GDLEDLE AL K +K LGSGSCSALIKL P ++L ++H TWN++ MLR+ K+Y + P + ++PG+ FSSYPG ++S DDFYIL SGLVT ETTIGN N LWK+V P+ V E+VR +VANRLA G WA++F+R NSGTYNNQWMI++Y F PG P P + L ILEQ+PG V +AD T L YW S+N+P F ++N SG+ A +YG WF YD +PR+QIF+R+ V DM ++V+LMRYNDF +DP++ C C P +GENAISARSDLNPANG+YPF AL R HGG D K T+ +A+ S +GPT+DQ PPF+WS + + L G PD +KF P + W+
Sbjct: 38 LAGAIPAPGGRWARDGQVPPASRSRSVLLDVSAGQLLMVDGRHPDAVAWANLTNAIRETGWAFLELGTSGQYNDSLQAYAAGVVEAAVSEELIYMHWMNTVVNYCGPFEYEVGYCERLKSFLEANLEWMQEEMESNPDSPYWHQVRLTLLQLKGLEDSYEGRVSFPAGKFTIKPLGFLLLQLSGDLEDLELALNKTKIKPSLGSGSCSALIKLLPGQSDLLVAHNTWNNYQHMLRVIKKYWLQFREGPWGDYPLVPGNKLVFSSYPGTIFSCDDFYILGSGLVTLETTIGNKNPALWKYVRPRGCVLEWVRNIVANRLASDGATWADIFKRFNSGTYNNQWMIVDYKAFIPGGP-SPGSRVLTILEQIPGMVVVADKTSELYQKTYWASYNIPSFETVFNASGLQALVAQYGDWFSYDGSPRAQIFRRNQSLVQDMDSMVRLMRYNDFLHDPLSLCKACNPQPNGENAISARSDLNPANGSYPFQALRQRSHGGIDVKVTSMSLARILSLLAASGPTWDQVPPFQWSTSPFSGLLHMGQPDLWKFAPVKVSWD 589 The following BLAST results are available for this feature:
BLAST of TCONS_00069334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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