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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069348 ID=TCONS_00069348|Name=TCONS_00069348|organism=Clytia hemisphaerica|type=transcript|length=1879bp
agtTTTTGTTCAGTATATGAAACAACAAAATGAATTATCAAACCAACACT
CGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAGAAATGAGCACGACAAG
CAATGAGGCTGCAAAACTTTTAGATCATGCTATAGACCAGATGTTTTGTA
ATGTTGCAGATCCTGCAATGGGAGGTATGATTGGGACTGTAGATAAAATG
TTGGAAGCTGACCCTGATTTCTTCATGGCAAAAATTTTCTCTATCGGAGT
TCGAGGAAGCTGCTGTAGAAATAGTCCAACCATCGCTAAACTAGTCTCTG
AATTGGAATCCGTTGATGACTCAAAGCTTAACGAGCGAGAAAAATTACAT
CGTAAAGCCAGCATTGAATGGGCTACTGAGAAAAAAACAGATGCACTTCG
AACTTGGGAATATATTTTACTACAATATCCTAAAGATACCATTGcccttt
tattttcaatcaatgGATACATCTTTTCTGGTCAATCGAGGATGTTGAGA
GATTCCCTAGCTCGAACATTACCTTATTGGAGAGAATCAGATTTTCACTT
TGGATATCTTCAAGGCTATTACGCATTTGGATTGGAACAAAGCAACCAAT
TCGTTCAAGCTGAAAAAGCTGTCAAAAAGTCTTTGGAAATCAATCCTGAT
AATACTTGGGGCTTTCACGCCTATTCTCACATCTTTGACGCAACCTGTCG
TTCCCAGGAAGGAGTTGATTTCCTTGAAGAAAATGATACATTCTTGACTG
ATGATAACAGGCTAACTTGTCATCTTTTTTGGCATCAAACTGTCAATTTA
ACCGAACTTGGGCATTATGATCGAGCTTTGAAATTGTATGATGATAAAAT
TTTATCGTTTAAGAGGACTCCCAACGCGTACCATCTCAGTGATAGTGTAC
AAGTATTGCAACGTTTAGAATTCGAAGGTATCAACGTTGGTGACAGATGG
GAAGAAGTGTACTCTGTTTACAAACCAATGTACAAATCTCATGAGCTTGT
CTACGATGATATGCATTTGACAGCTGCAATGATTCGATCCAAGACAGGCC
GTGAAAGCAAATCTAATTTCTTCGAATCAATGGAAGAGCATCTTAATAAA
AGCCTAGATACAACTTATGGAGACGTTGGTAAACGCATTGGATTTCCTTT
CGCTAAAGGTATTGCTGCTTATTGTGAAGGCAATTTTGAGGAAGCTTCCA
ATCTCTTTATACCTGTTTACAAAGACATTTGGGAAATTGGTGGAAGCAAA
GCAACACAAGACATCTTTAATCAGTATGTTATCAATGCTTGTGTTCGATC
GCCTAATCAGTTTCACAAACGCATGGCTAGATCGTTATTACATGAGCGCA
AATTGTTTAGACCAGATTCGTTGCTTACTGATCGAGTACTGGCAAAGCTT
GACGCGTACCACTGATAATCtttaaaccaaaaatattggacaTCACAAAT
TATTTCGGTCAATCTTAACCAACAATAATATTTACTttagatttttatca
aattttatccCCATTTAACATTGTGGAGACCTCCTGGATTCTGGGGTTTT
GaggattttctgattttttaaaaCAGGTAGGGGTTTGGTTTATGCAGAAT
TTCAGGTGGGGATACCCCTATGTAGTTGGGGTGATATTTTTCAGGTGgtg
gttttcaaattttccatatTAGGATAGGACTGTTTGCTTTTGgacttttt
aatctttttttacaCAGAAAAATACAAAACGAAAGCCCAGAACACGTAAT
TCACGCCgaaagttcatttttttctccagttaTTTCCtctctaaaaagaa
aaagtttgaagtCCTCAGAAATTTTTACCAAAATCAGGTGAGGGCTCGAG
GATTTTACATAAATTTATTTACAATCTGG Run BLAST on NCBI transcript from alignment at scaffold_498:141834..147055- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069348 ID=TCONS_00069348|Name=TCONS_00069348|organism=Clytia hemisphaerica|type=transcript|length=5222bp|location=Sequence derived from alignment at scaffold_498:141834..147055- (Clytia hemisphaerica)
AGTTTTTGTTCAGTATATGAAACAACAAAATGAATTATCAAACCAACACT
CGAGATTGTCAAGCCTGGAAAGATGAAGGTTTAGAAATGAGCACGACAAG
CAATGAGGCTGCAAAACTTTTAGATCATGCTATAGACCAGATGTTTTGTA
ATGTTGCAGATCCTGCAATGGGAGGTATGATTGGGACTGTAGATAAAATG
TTGGAAGCTGACCCTGATTTCTTCATGGCAAAAATTTTCTCTATCGGTGA
GTGTTTTTATTTTTCATTTTCTCCAGGTCCAGTCCAACAATTTTCGAAAA
TCTGAAGACATTAATTTTGTCTTATATAATGGACAAAGAAAATGCACCGT
AACGGTCTATTTTTCACCTAAAATTACTTATTGATTTGATGGAATTTTCT
TTATTAAAAAATAGTAGCTTTAAAGAAGTCATTACAATGCGAAAAATCTA
CTTCACTTTACCCAGCGTCGAGCGGCGCTATTTCACAAGTATTTGTAAAA
AAGTGAATCTAGGCGTATTATCAACTTTTTGAAGCTTACTGATAGCGCAA
GATAATTCACTGGCATTGTCTGGTTTTCGAACGCGTAAGATTTCGTTATT
CTAAAACAAAACGTCAGATTTCATTTGTTCTTNATTGTACAATTTTCCGC
GGGAGGACTATTTTCCGCGGGAGGACTATTTTCCTCAAACGTATAATTTT
CAAGCGCCTTCAGACAGAGGTTTCCCGTGCGCGTAAGAAAATTACGAACA
GCTGTTATCAGGTTATCGACTAGATAGTTGTTCTGTTGTAAATTTTCATG
ACGTGCAAATAAGATGGAGAAACTTTTGGCAAAATATAATAACTGTAAGA
AAAAAAAAGAATCAAAAAAACAATAAAATTGTGTTTTTGTCATTTTGTCT
TATTAATAGCGTAATTTCCGTAATGATTTTCTGAAATGTCGACATGGAAA
AAAGTCAGTTTTTTAACTAACTTTCGAACTACTTACAAATCTAATATATG
ATAGCTCAAAATTCAAATTAGAGCATCCTCTATACGATAGAAAAAGAATG
AACAAAAATTTAAATCCTGAAGCTCACAATATCTCGACAAACCTGTATAC
TTTTTTTGGTGCACCCGGTAGTTCAGAGGTGAATATTATAAATCGTCACA
TTTTACAATATTGAAAAATCTTAAAGAATTTTTGATTTGTTTAGTTTTTG
TTCAGTATATGAAACAACAAAATGAATTATCAAACCAACACTCGAGATTG
TCAAGCCTGGAAAGATGAAGGTTTAGAAATGAGCACGACAAGCAATGAGG
CTGCAAAACTTTTAGATCATGCTATAGACCAGATGTTTTGTAATGTTGCA
GATCCTGCAATGGGAGGTATGATTGGGACTGTAGATAAAATGTTGGAAGC
TGACCCTGATTTCTTCATGGCAAAAATTTTCTCTATCGGTGAGTGTTTTT
ATTTTTCATTTTCTCCAGGTCCAGTCCAACAATTTTCGAAAATCTGAAGA
CATTAATTTTGTCTTATATAATGGACAAAGAAAATGCACCGTAACGGTCT
ATTTTTCACCTAAAATTACTTATTGATTTGATGGAATTTTCTTTATTAAA
AAATAGTAGCTTTAAAGAAGTCATTACAATGCGAAAAATCTACTTCACTT
TACCCAGCGTCGAGCGGCGCTATTTCACAAGTATTTGTAAAAAAGTGAAT
CTAGGCGTATTATCAACTTTTTGAAGCTTACTGATAGCGCAAGATAATTC
ACTGGCATTGTCTGGTTTTCGAACGCGTAAGATTTCGTTATTCTAAAACA
AAACGTCAGATTTCATTTGTTCTTCTATTTTGAAGTCATTGCATTGTCAG
GGTCAAAATTTTGTCCTTGGTGGGAAAAATACCCTCCATTCTCAGCTCAA
TGGAAAATTGACTTTTATTTCCTCACCAGTGCACTCCAAAACCATCCCAT
TAGATTTGTTTTACCTTAGAACAATAGGATTTCTATGATCCGCATTGAGA
TTTTAAAAGATTATGAGACAGGGGTGTCATTAGAATATGACATTCAAAAT
TATTCCCATCAAAGATTTCGGTTGGCCGGGATTGATAAACTGTTTCGGGT
TTTTATGAAGCTCAGAGTGATCAATGATCATGGGTGGTTTTAGACCCTAT
CGAACTTATCAGATGAAGAGATTTGTAATTGTCGTTTCATTGTTTTTTAA
CGAGCGTTGCGCTCCTTCCCATGTTTCCGACGTACTTGCTCTATTGTCTC
AAATCCGCAAGTGGTGATACAGCCCAGGACCAATTTGATTAAATTAATGA
ATTCCTAAGTGGAATTTCACTCCCATTTAGGGTCACTTTATGGCAAAGTT
TTCAAAAACGAGTAGGGTTCATTCAAACCCAAGCGGAACACCCCAATCGA
TCGGAAATGGTTGTCATTCGTAGAAATTTTAGCTATAAAACTGAGTGATA
AATTTTAGAGATTACTTTGATTTTTCTTATAAAACAATAGATAAACTACG
CAGTTTTTATATGCAATTTCAGTTTACGGGTCTTCTTAGCATTTTAGCTA
ATTGTCTGAAAAATTTGCTATAACCACCCCTGATATTATGCTATTATATT
TATGCTTATTGGGTCAAGGGCTATCATCTGCCATGGTTAGATTAAAAAGC
CTTTGCTTTACGAGATAGTGAATAGCTAATTTTAGGATTCGAGCCTTAGC
AACCTGGTTCCTTATGAAAAATGTAAAACAAAAAAGAACAGTTTCTTCCG
GGTTGATCATCAGCAAAAACACCCCTGTCTTTCAGCCCCGGTGGAACCTT
TTTTCTCAGTGGGGATAAAAATTCCTGTTGAAATCCCAATGAGGATAGAA
AGGCTAAAAAATCTAGTAAGGATGATTTTCGAGTGCAGTTTTTAAACATT
CGATTTCGAGTTGGGTTGAAATGAAAGTCAATTATCCAGTGGGGCTAAAA
TTCCAGGGTATTTTCCCCCGGGGACAAAACTTTGGCTAAATTCCCCAGTG
AGGATGAGGTCCCACACAGAGATTTGCAAAAACTGTCTTTTTTTTCTGTT
TCACATAAAAGATATCAAAAAAGTGTATAAATGTCAACGAAAAATACGTT
CTTATCATTTATTGTAGGAGTTCGAGGAAGCTGCTGTAGAAATAGTCCAA
CCATCGCTAAACTAGTCTCTGAATTGGAATCCGTTGATGACTCAAAGCTT
AACGAGCGAGAAAAATTACATCGTAAAGCCAGCATTGAATGGGCTACTGA
GAAAAAAACAGATGCACTTCGAACTTGGGAATATATTTTACTACAATATC
CTAAAGATACCATTGCCCTTTTATTTTCAATCAATGGATACATCTTTTCT
GGTCAATCGAGGATGTTGAGAGATTCCCTAGCTCGAACATTACCTTATTG
GAGAGAATCAGATTTTCACTTTGGATATCTTCAAGGTGAGAAAGGGGTGG
CTTCAGGGGGTACCTGATTCCGCCATTCCGTCAAAAATTCATTTTTTCCC
GATTTTTGAATTCCAACCGTTTTTGTTTTTCTTGCTAAATTCCGTTTTTC
CGAAATTTCGTCCAACTTTTTGTCAAATCCCACCACTCCACTCAAAAACA
GGCATAATTCTGCTCATCTGCATTCAAAGCATTTAATTCAATGTTAACAC
GGAAATCAGAAAAAAGCATTGACTTTGATATGATCTATTTGTTAAACATC
GAAATTGGTCTACTCAACTTGTTCCAAAATTGTGAGCTATTTTGGTTTTG
CCTAAAATGACTAGAACATCTTTTTATAAACATTTTAATGGACTGAGTGA
TTATGCTTGGTGATGAGTACTTCTTTATGTGTACCGAATCATCGAAGACA
ATATAGAAAGCTTTTACTAATCTGCTCTTGTACTTATCGTTTTGTATTTC
ATCATAGGCTATTACGCATTTGGATTGGAACAAAGCAACCAATTCGTTCA
AGCTGAAAAAGCTGTCAAAAAGTCTTTGGAAATCAATCCTGATAATACTT
GGGGCTTTCACGCCTATTCTCACATCTTTGACGCAACCTGTCGTTCCCAG
GAAGGAGTTGATTTCCTTGAAGAAAATGATACATTCTTGACTGATGATAA
CAGGCTAACTTGTCATCTTTTTTGGCATCAAACTGTCAATTTAACCGAAC
TTGGGCATTATGATCGAGCTTTGAAATTGTATGATGATAAAATTTTATCG
TTTAAGAGGACTCCCAACGCGTACCATCTCAGTGATAGTGTACAAGTATT
GCAACGTTTAGAATTCGAAGGTATCAACGTTGGTGACAGATGGGAAGAAG
TGTACTCTGTTTACAAACCAATGTACAAATCTCATGAGCTTGTCTACGAT
GATATGCATTTGACAGCTGCAATGATTCGATCCAAGACAGGCCGTGAAAG
CAAATCTAATTTCTTCGAATCAATGGAAGAGCATCTTAATAAAAGCCTAG
ATACAACTTATGGAGACGTTGGTAAACGCATTGGATTTCCTTTCGCTAAA
GGTATTGCTGCTTATTGTGAAGGCAATTTTGAGGAAGCTTCCAATCTCTT
TATACCTGTTTACAAAGACATTTGGGAAATTGGTGGAAGCAAAGCAACAC
AAGACATCTTTAATCAGTATGTTATCAATGCTTGTGTTCGATCGCCTAAT
CAGTTTCACAAACGCATGGCTAGATCGTTATTACATGAGCGCAAATTGTT
TAGACCAGATTCGTTGCTTACTGATCGAGTACTGGCAAAGCTTGACGCGT
ACCACTGATAATCTTTAAACCAAAAATATTGGACATCACAAATTATTTCG
GTCAATCTTAACCAACAATAATATTTACTTTAGATTTTTATCAAATTTTA
TCCCCATTTAACATTGTGGAGACCTCCTGGATTCTGGGGTTTTGAGGATT
TTCTGATTTTTTAAAACAGGTAGGGGTTTGGTTTATGCAGAATTTCAGGT
GGGGATACCCCTATGTAGTTGGGGTGATATTTTTCAGGTGGTGGTTTTCA
AATTTTCCATATTAGGATAGGACTGTTTGCTTTTGGACTTTTTAATCTTT
TTTTACACAGAAAAATACAAAACGAAAGCCCAGAACACGTAATTCACGCC
GAAAGTTCATTTTTTTCTCCAGTTATTTCCTCTCTAAAAAGAAAAAGTTT
GAAGTCCTCAGAAATTTTTACCAAAATCAGGTGAGGGCTCGAGGATTTTA
CATAAATTTATTTACAATCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069348-exon-scaffold_498-1575043694:146810..147055 | TCONS_00069348-exon-scaffold_498-1575043694:146810..147055 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1575043694:143621..143938 | TCONS_00069348-exon-scaffold_498-1575043694:143621..143938 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1575043694:141834..143148 | TCONS_00069348-exon-scaffold_498-1575043694:141834..143148 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1510915933:146810..147055 | TCONS_00069348-exon-scaffold_498-1510915933:146810..147055 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1510915933:143621..143938 | TCONS_00069348-exon-scaffold_498-1510915933:143621..143938 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1510915933:141834..143148 | TCONS_00069348-exon-scaffold_498-1510915933:141834..143148 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1491911889:146810..147055 | TCONS_00069348-exon-scaffold_498-1491911889:146810..147055 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1491911889:143621..143938 | TCONS_00069348-exon-scaffold_498-1491911889:143621..143938 | Clytia hemisphaerica | exon |
| TCONS_00069348-exon-scaffold_498-1491911889:141834..143148 | TCONS_00069348-exon-scaffold_498-1491911889:141834..143148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_498 | supercontig | scaffold_498:141834..147055 - |
Blast
BLAST of TCONS_00069348 vs. Swiss-Prot (Human)
Match: TTC38 (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 9.619e-89 Identity = 154/467 (32.98%), Postives = 248/467 (53.10%), Query Frame = 3
Query: 30 MNYQTNTRDCQAWKDEGLEMSTTSNEAAKLLDHAIDQMFCNVADPAMGGMIGTVDKMLEADPDFFMAKIFSIGV----RGSCCRNSPTIAKLVSELESVDDSK-LNEREKLHRKASIEWATEKKTDALRTWEYILLQYPKDTIALLFSINGYIFSGQSRMLRDSLARTLPYWRESDFHFGYLQGYYAFGLEQSNQFVQAEKAVKKSLEINPDNTWGFHAYSHIFDATCRSQEGVDFLEENDTFLTDDNRLTCHLFWHQTVNLTELGHYDRALKLYDDKIL-SFKRTPNAYHLSDSVQVLQRLEFEGINVGDRWEEVYSVYKPMYKSHELVYDDMHLTAAMIRSKTGRESKSNFFESMEEHLNKSLDTTYGDVGKRIGFPFAKGIAAYCEGNFEEASNLFIPVYKDIWEIGGSKATQDIFNQYVINACVRSPNQFHKRMARSLLHERKLFRPDSLLTDRVLAKLDAYH 1412
M + RDCQAWKD L +STTSNEA KL D + Q D ++GG+ G + K+ ADP F M + G+ GS + + V + + ++ L RE+LH A +A A WE IL +P D +AL FS + Y + G +RDS+AR P+W Y++G Y+FGL ++N + QAEK K++L INP + W H +HI + ++G++F++ ++TF D + L CH +WH + L E G Y+ AL +YD IL S + + DS +L RL+ EG++VG RW++V V + + H L+++D H A + + + ++ ++ + + + + +G P + + +GN + L +P+ I ++GGS A +D+FNQ +I+A + + HK +ARSLL ER +P+S LT+R++ K H
Sbjct: 1 MAAASPLRDCQAWKDARLPLSTTSNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVEISRTQPLTRREQLHVSAVETFANGNFPKACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHSETFWKDSDMLACHNYWHWALYLIEKGEYEAALTIYDTHILPSLQANDAMLDVVDSCSMLYRLQMEGVSVGQRWQDVLPVARKHSRDHILLFNDAHFLMASLGAHDPQTTQ-ELLTTLRDASESPGENCQHLLARDVGLPLCQALVEAEDGNPDRVLELLLPIRYRIVQLGGSNAQRDVFNQLLIHAALNCTSSVHKNVARSLLMERDALKPNSPLTERLIRKAATVH 466
The following BLAST results are available for this feature:
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