TCONS_00069224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069224
Unique NameTCONS_00069224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069224 ID=TCONS_00069224|Name=TCONS_00069224|organism=Clytia hemisphaerica|type=transcript|length=1280bp
GGTTATTTTTGCATTTATCGTTTATGATATAGCCGAAGCAATAAATACAT
CAACGGTAAAACCCAATGTCTCTTATCGAAGAGAAGGCCCGCTTTATTTC
TTGGGACGCTTTCAATATACTCTCGAAGATGGCTACGAAACCTAAAAGTA
TCTATCCAAGTATATCGAAGATAGggaAAGATATCTTCAGCATAAATGAC
GTCAATGACGAATTGTCACCATATATCGTTTTGGTTGGAAATTGTGGGGC
TGGAAAATCGACGATTGTTGAAAAGCTGACAGGTGTCAAAGGTCGTGCAT
CGTCGGCAAAAACGAGTTTCACAACAACCGCGGAATATCTTTGGACACCG
GATAAGAGTCTTCTTATCGCCGACACTCCTGGATTAAATTCTCATGAAAG
TACTTACGAGCATAGTTTAGAGGTTGCTTCTGCCTTTATTCATAAGCCAC
TTTCTAAGTATTTTGCAGTAGTAGAAGCGCATATCCGTATGGATCAGGTC
ATTGATAACATTAAAACCCACGTTGATAAATTCATTGAACTTCCAGATGA
ACTGATCGGTGTCATTGTAACCAAGATGGATATCAATAAAAATTGGAATG
AGAGCGAGTTGGCAAAAGTTTTGGATGAAGATCTAGGAATCGAGGATGTT
GTCTTTTCGCAGCTTAAAACAAAAGGTAAAGATCTCCAAAAAGCCATACT
GGAGAAGTGTGGCACTCCACAGGCATTTGATCTCGATGGATCATCTTTTC
TCAGGCTGTTTAAGTTTGGCTTGGAACATAGAAAAGTAGTTCGGGTAAGA
TCTCGTTTGGTTAATCGATTCAGAGGTTTCAAGCTCTCCTTTGAACAAAG
AAGGAAGAGCTTTGATACTGAAGATCAGACCgatttattttttgagttta
aagctttCATGGAAATTCAGATTGACGTGATAAAAAAGGAAATGTGCGAA
GAACTTGGTTTTACATTTTTGCACGACGAAGCAAAGAATATAAAACATGC
TGGAACTCTAGCATCAATGGTTAACGAAATACGAGCCATCCTTTATGATA
TTCGTATGGAAGGTCTGAAACACCAAAATGACGCCAGTGGCAGCTCCCTC
AGACAATGTCCACATTGTAAGGAGATCTGGAGCAAGGTAATTGGTTGTGA
TGGAGAAACCACGTGTGGGAATCGACCTTCAGGATATCAAGAATCCAAAC
GGAATGTAATGGCCACATTTTCATTTACCCCTTTGGTAAGTGATCCATCA
GGCAATAATGTCGACCTAGACATTATTAAA
Run BLAST on NCBI

protein sequence of TCONS_00069224-protein

>TCONS_00069224-protein ID=TCONS_00069224-protein|Name=TCONS_00069224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MSLIEEKARFISWDAFNILSKMATKPKSIYPSISKIGKDIFSINDVNDEL
SPYIVLVGNCGAGKSTIVEKLTGVKGRASSAKTSFTTTAEYLWTPDKSLL
IADTPGLNSHESTYEHSLEVASAFIHKPLSKYFAVVEAHIRMDQVIDNIK
THVDKFIELPDELIGVIVTKMDINKNWNESELAKVLDEDLGIEDVVFSQL
KTKGKDLQKAILEKCGTPQAFDLDGSSFLRLFKFGLEHRKVVRVRSRLVN
RFRGFKLSFEQRRKSFDTEDQTDLFFEFKAFMEIQIDVIKKEMCEELGFT
FLHDEAKNIKHAGTLASMVNEIRAILYDIRMEGLKHQNDASGSSLRQCPH
CKEIWSKVIGCDGETTCGNRPSGYQESKRNVMATFSFTPLVSDPSGNNVD
LDIIK
Run BLAST on NCBI

transcript from alignment at scaffold_496:99748..101216-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069224 ID=TCONS_00069224|Name=TCONS_00069224|organism=Clytia hemisphaerica|type=transcript|length=1469bp|location=Sequence derived from alignment at scaffold_496:99748..101216- (Clytia hemisphaerica)
GGTTATTTTTGCATTTATCGTTTATGATATAGCCGAAGCAATAAATACAT
CAACGGTAAAACCCAATGTCTCTTATCGAAGAGAAGGCCCGCTTTATTTC
TTGGGACGCTTTCAATATACTCTCGAAGATGGCTACGAAACCTAAAAGTA
TCTATCCAAGTATATCGAAGATAGGTAAGTGCGACTTTATGATGTGGAAT
TTAGAAAATATATTGATATATACTGGCTTCTCTTGTTTGCCTCTTCTCGC
TGACTCTATTTTACCAATGAAATGGCTACATTTAGACTAAAATCTTATAT
CTTCTAAATTGTCTTATATAAAACTTAGGTATTAAAATCTATTCGTTTAT
TTTAATTTTTCAGGGAAAGATATCTTCAGCATAAATGACGTCAATGACGA
ATTGTCACCATATATCGTTTTGGTTGGAAATTGTGGGGCTGGAAAATCGA
CGATTGTTGAAAAGCTGACAGGTGTCAAAGGTCGTGCATCGTCGGCAAAA
ACGAGTTTCACAACAACCGCGGAATATCTTTGGACACCGGATAAGAGTCT
TCTTATCGCCGACACTCCTGGATTAAATTCTCATGAAAGTACTTACGAGC
ATAGTTTAGAGGTTGCTTCTGCCTTTATTCATAAGCCACTTTCTAAGTAT
TTTGCAGTAGTAGAAGCGCATATCCGTATGGATCAGGTCATTGATAACAT
TAAAACCCACGTTGATAAATTCATTGAACTTCCAGATGAACTGATCGGTG
TCATTGTAACCAAGATGGATATCAATAAAAATTGGAATGAGAGCGAGTTG
GCAAAAGTTTTGGATGAAGATCTAGGAATCGAGGATGTTGTCTTTTCGCA
GCTTAAAACAAAAGGTAAAGATCTCCAAAAAGCCATACTGGAGAAGTGTG
GCACTCCACAGGCATTTGATCTCGATGGATCATCTTTTCTCAGGCTGTTT
AAGTTTGGCTTGGAACATAGAAAAGTAGTTCGGGTAAGATCTCGTTTGGT
TAATCGATTCAGAGGTTTCAAGCTCTCCTTTGAACAAAGAAGGAAGAGCT
TTGATACTGAAGATCAGACCGATTTATTTTTTGAGTTTAAAGCTTTCATG
GAAATTCAGATTGACGTGATAAAAAAGGAAATGTGCGAAGAACTTGGTTT
TACATTTTTGCACGACGAAGCAAAGAATATAAAACATGCTGGAACTCTAG
CATCAATGGTTAACGAAATACGAGCCATCCTTTATGATATTCGTATGGAA
GGTCTGAAACACCAAAATGACGCCAGTGGCAGCTCCCTCAGACAATGTCC
ACATTGTAAGGAGATCTGGAGCAAGGTAATTGGTTGTGATGGAGAAACCA
CGTGTGGGAATCGACCTTCAGGATATCAAGAATCCAAACGGAATGTAATG
GCCACATTTTCATTTACCCCTTTGGTAAGTGATCCATCAGGCAATAATGT
CGACCTAGACATTATTAAA

Coding sequence (CDS) from alignment at scaffold_496:99748..101216-

>TCONS_00069224 ID=TCONS_00069224|Name=TCONS_00069224|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_496:99748..101216- (Clytia hemisphaerica)
GGAAAGATATCTTCAGCATAAATGACGTCAATGACGAATTGTCACCATAT
ATCGTTTTGGTTGGAAATTGTGGGGCTGGAAAATCGACGATTGTTGAAAA
GCTGACAGGTGTCAAAGGTCGTGCATCGTCGGCAAAAACGAGTTTCACAA
CAACCGCGGAATATCTTTGGACACCGGATAAGAGTCTTCTTATCGCCGAC
ACTCCTGGATTAAATTCTCATGAAAGTACTTACGAGCATAGTTTAGAGGT
TGCTTCTGCCTTTATTCATAAGCCACTTTCTAAGTATTTTGCAGTAGTAG
AAGCGCATATCCGTATGGATCAGGTCATTGATAACATTAAAACCCACGTT
GATAAATTCATTGAACTTCCAGATGAACTGATCGGTGTCATTGTAACCAA
GATGGATATCAATAAAAATTGGAATGAGAGCGAGTTGGCAAAAGTTTTGG
ATGAAGATCTAGGAATCGAGGATGTTGTCTTTTCGCAGCTTAAAACAAAA
GGTAAAGATCTCCAAAAAGCCATACTGGAGAAGTGTGGCACTCCACAGGC
ATTTGATCTCGATGGATCATCTTTTCTCAGGCTGTTTAAGTTTGGCTTGG
AACATAGAAAAGTAGTTCGGGTAAGATCTCGTTTGGTTAATCGATTCAGA
GGTTTCAAGCTCTCCTTTGAACAAAGAAGGAAGAGCTTTGATACTGAAGA
TCAGACCGATTTATTTTTTGAGTTTAAAGCTTTCATGGAAATTCAGATTG
ACGTGATAAAAAAGGAAATGTGCGAAGAACTTGGTTTTACATTTTTGCAC
GACGAAGCAAAGAATATAAAACATGCTGGAACTCTAGCATCAATGGTTAA
CGAAATACGAGCCATCCTTTATGATATTCGTATGGAAGGTCTGAAACACC
AAAATGACGCCAGTGGCAGCTCCCTCAGACAATGTCCACATTGTAAGGAG
ATCTGGAGCAAGGTAATTGGTTGTGATGGAGAAACCACGTGTGGGAATCG
ACCTTCAGGATATCAAGAATCCAAACGGAATGTAATGGCCACATTTTCAT
TTACCCCTTTGGTAAGTGATCCATCAGGCAATAATGTCGACCTAGACATT
ATTAAAATGTCTCTTATCGAAGAGAAGGCCCGCTTTATTTCTTGGGACGC
TTTCAATATACTCTCGAAGATGGCTACGAAACCTAAAAGTATCTATCCAA
GTATATCGAAGATAGGGAAAGATATCTTCAGCATAAATGACGTCAATGAC
GAATTGTCACCATATATCGTTTTGGTTGGAAATTGTGGGGCTGGAAAATC
GACGATTGTTGAAAAGCTGACAGGTGTCAAAGGTCGTGCATCGTCGGCAA
AAACGAGTTTCACAACAACCGCGGAATATCTTTGGACACCGGATAAGAGT
CTTCTTATCGCCGACACTCCTGGATTAAATTCTCATGAAAGTACTTACGA
GCATAGTTTAGAGGTTGCTTCTGCCTTTATTCATAAGCCACTTTCTAAGT
ATTTTGCAGTAGTAGAAGCGCATATCCGTATGGATCAGGTCATTGATAAC
ATTAAAACCCACGTTGATAAATTCATTGAACTTCCAGATGAACTGATCGG
TGTCATTGTAACCAAGATGGATATCAATAAAAATTGGAATGAGAGCGAGT
TGGCAAAAGTTTTGGATGAAGATCTAGGAATCGAGGATGTTGTCTTTTCG
CAGCTTAAAACAAAAGGTAAAGATCTCCAAAAAGCCATACTGGAGAAGTG
TGGCACTCCACAGGCATTTGATCTCGATGGATCATCTTTTCTCAGGCTGT
TTAAGTTTGGCTTGGAACATAGAAAAGTAGTTCGGGTAAGATCTCGTTTG
GTTAATCGATTCAGAGGTTTCAAGCTCTCCTTTGAACAAAGAAGGAAGAG
CTTTGATACTGAAGATCAGACCGATTTATTTTTTGAGTTTAAAGCTTTCA
TGGAAATTCAGATTGACGTGATAAAAAAGGAAATGTGCGAAGAACTTGGT
TTTACATTTTTGCACGACGAAGCAAAGAATATAAAACATGCTGGAACTCT
AGCATCAATGGTTAACGAAATACGAGCCATCCTTTATGATATTCGTATGG
AAGGTCTGAAACACCAAAATGACGCCAGTGGCAGCTCCCTCAGACAATGT
CCACATTGTAAGGAGATCTGGAGCAAGGTAATTGGTTGTGATGGAGAAAC
CACGTGTGGGAATCGACCTTCAGGATATCAAGAATCCAAACGGAATGTAA
TGGCCACATTTTCATTTACCCCTTTGGTAAGTGATCCATCAGGCAATAAT
GTCGACCTAGACATTATTAAAATGTCTCTTATCGAAGAGAAGGCCCGCTT
TATTTCTTGGGACGCTTTCAATATACTCTCGAAGATGGCTACGAAACCTA
AAAGTATCTATCCAAGTATATCGAAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043142XLOC_043142Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069224-proteinTCONS_00069224-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069224-exon-scaffold_496-1575043694:101043..101216TCONS_00069224-exon-scaffold_496-1575043694:101043..101216Clytia hemisphaericaexon
TCONS_00069224-exon-scaffold_496-1575043694:99748..100853TCONS_00069224-exon-scaffold_496-1575043694:99748..100853Clytia hemisphaericaexon
TCONS_00069224-exon-scaffold_496-1510915933:101043..101216TCONS_00069224-exon-scaffold_496-1510915933:101043..101216Clytia hemisphaericaexon
TCONS_00069224-exon-scaffold_496-1510915933:99748..100853TCONS_00069224-exon-scaffold_496-1510915933:99748..100853Clytia hemisphaericaexon
TCONS_00069224-exon-scaffold_496-1491911889:101043..101216TCONS_00069224-exon-scaffold_496-1491911889:101043..101216Clytia hemisphaericaexon
TCONS_00069224-exon-scaffold_496-1491911889:99748..100853TCONS_00069224-exon-scaffold_496-1491911889:99748..100853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:99748..101216 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0662516	0.0646058	0	0	0.402048	0	0.340708	0.199354	0.195401	0.20746	0.134244	0.286801	7.20412	4.07252	0.11286	0.322975	0.174072	0.30586	19.0153	18.6821	0.352307	0.281198	0.0379814	0.207184	0.213394	0.41264	0	0	0.110301	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP_binding_domain
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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