TCONS_00069109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069109
Unique NameTCONS_00069109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069109 ID=TCONS_00069109|Name=TCONS_00069109|organism=Clytia hemisphaerica|type=transcript|length=868bp
CTTGACTGGGAGAAGATAGCTCGTGTAGTTCATAAATAGTTTTTTCAGTC
AAATTCCAATCCTGTTTGTTGTGTCTCTACTCGAAATTTTCCATGGTAAG
TCGGTAAGTATTTTGTATAATTCTTAGGGATATTTTTCTGATTACAGTGC
AGTAGGATTTACCAAATATTTGAAACTCTCTGGCAATTTTTATGCACCTT
GGTTTGCTTTATATTCCTTTCTTTTCTCTGCAGGAATTGGGAATAGCAAA
CAGAAATGAAGAAATAGTGGTTTGGTACTCCaacataaatttttcaaatg
ataaTGTTATACTTTAAGGGAGGAAATTTTTATCTAAAGCAATCGAATAA
TTTGCAATTCAATTGTCGAATGCAATTTGAATCTTAATCGAAttttaccc
aggatttgccgatGCTTCGATTAGGTTCAATTGTATTCAATTAtgtttga
ttgattcaattatATTTGCTGGCTTTAATCAATCTCGTGCAGTGCTTATG
TGCTCTCGCTCTATCTGATTTTCCATTATCGTATTGCTGGCGGCCGCCCA
CACTTAGCTCTAAAACTGTAATTGAAATCAAACTTATCGAACATAATCAA
AGCTCAACAGCAGTAGacttaactcttcatacaaaaattacgggatgAAA
ggcgcatatttggactttgtaccctatgctgcacgcaagcacctAATCTA
ATAAagtcaaaaatcagttttttgaagtttgcaaaaaaataccacataga
agatatttcaaattcagtatgtgaatagagcagtaaaaaacttttttttt
ctttctttttttgccaaAGTTTAGGAATGACCAGCGGGGTACAGACACAG
GGTACTGACCCATAGCCA
Run BLAST on NCBI

transcript from alignment at scaffold_493:25035..25902

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069109 ID=TCONS_00069109|Name=TCONS_00069109|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at scaffold_493:25035..25902 (Clytia hemisphaerica)
TGGCTATGGGTCAGTACCCTGTGTCTGTACCCCGCTGGTCATTCCTAAAC
Tttggcaaaaaaagaaagaaaaaaaaagttttttactgctctattcacat
actgaatttgaaatatcttctatgtggtatttttttgcaaacttcaaaaa
actgatttttgactTTATTAGATTaggtgcttgcgtgcagcatagggtac
aaagtccaaatatgcgccTTTcatcccgtaatttttgtatgaagagttaa
gtCTACTGCTGTTGAGCTTTGATTATGTTCGATAAGTTTGATTTCAATTA
CAGTTTTAGAGCTAAGTGTGGGCGGCCGCCAGCAATACGATAATGGAAAA
TCAGATAGAGCGAGAGCACATAAGCACTGCACGAGATTGATTAAAGCCAG
CAAATataattgaatcaatcaaacaTAATTGAATACAATTGAACCTAATC
GAAGCatcggcaaatcctgggtaaaaTTCGATTAAGATTCAAATTGCATT
CGACAATTGAATTGCAAATTATTCGATTGCTTTAGATAAAAATTTCCTCC
CTTAAAGTATAACAttatcatttgaaaaatttatgttGGAGTACCAAACC
ACTATTTCTTCATTTCTGTTTGCTATTCCCAATTCCTGCAGAGAAAAGAA
AGGAATATAAAGCAAACCAAGGTGCATAAAAATTGCCAGAGAGTTTCAAA
TATTTGGTAAATCCTACTGCACTGTAATCAGAAAAATATCCCTAAGAATT
ATACAAAATACTTACCGACTTACCATGGAAAATTTCGAGTAGAGACACAA
CAAACAGGATTGGAATTTGACTGAAAAAACTATTTATGAACTACACGAGC
TATCTTCTCCCAGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043068XLOC_043068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069109-exon-scaffold_493-1491911889:25035..25902TCONS_00069109-exon-scaffold_493-1491911889:25035..25902Clytia hemisphaericaexon
TCONS_00069109-exon-scaffold_493-1510915933:25035..25902TCONS_00069109-exon-scaffold_493-1510915933:25035..25902Clytia hemisphaericaexon
TCONS_00069109-exon-scaffold_493-1575043694:25035..25902TCONS_00069109-exon-scaffold_493-1575043694:25035..25902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:25035..25902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.512567	0.515953	1.70095	1.3871	0.363002	0.234222	0.0704659	0.32957	0.511138	0.764461	0.0553976	1.63369	0.434675	0.613375	0.314835	0.291121	0.247165	0.0428344	0.238673	0.457231	1.62472	2.01273	0.185181	0.17043	0.346806	0.3188	0.161822	0.347503	0.263055	0.197439
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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