TCONS_00068962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068962
Unique NameTCONS_00068962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068962 ID=TCONS_00068962|Name=TCONS_00068962|organism=Clytia hemisphaerica|type=transcript|length=1558bp
ATTTTAAATAAAGGAATATATTCTCATTAATTGGTTTCCATGGAAGTTGC
AATACCTCTAACTAGTATattatgtaattaaaaagtaaGATCGTTCATCa
agaaattactttttttatCATCAGAATACATTATAGAGAGATGAGATTGT
TGGTGCAAAACAGATTTATGGGTTCAGTTTCTCCTGCACATTATAATGGT
ATTTGAAAGTAAAATGCCGCATCGACGAAGTCAACTTTTGGAAAACTTAT
GGGgaaaattactttttctaagCTTTCATTTGACAACGTTTTGTCTCATC
CTCATTCTTTCATGGAATGTTGATAATTGGATTGAGATAACTCCCAAAAG
ATGGGTTGACGTAGATCAAAGCTCAAAGCATATCTTCGCTGTAGCGTGTG
GGCTTCCAACTTTATTTTTACTAGTGATCATTGATATGGAGCTGTTTGGT
GTCATGCCCTGGCGTTGGAAAAagaagattttcactCTGACCTTCATCTT
TGCTGTTTTGCTGTTCATTTGTTCAGTCCTTGTGGTGAAAAATGTCAACA
CCTTGAGTTATGCACCAATCTATTGTCATGCGAAGGTACAGTGTGGGCAT
CTCAAAGCAGCATCTGCCTTCGGATTTTTGACATCGTTTTGTTTACTGGG
GTGTTCAATTGCATTGGGAGCGTTTATTATCGGTGAAAACTAAATGGAAA
ATGGTCACTTAAACTAAAGATGATcacaaacaaacattttctaTTCACAT
ACACGACTGTGCATAAGGAGTATTGCTTTTTTGGAGGTGGTGGTAGCAGT
CAATGGTGATTTGGAAGATTTGGAGACTTTTCCCAAGAGTTTACGACTTA
TGCTGCCTTCCTGTTTCAGTGGATTTCGTCTTTTTTTCAGTGAGGTTTTC
TAGGTTCTTCTTCCTAGGTTCTTCACACAATGTATGgattttaatagatt
tttttctaaagaaaaataacagacaaaattaaaataaaatttggattTTA
TATTCTTCTTTGAATGGAAAAATTATAAAGTGCAAGTCCGAAGGAAGTTA
AACTTATCTAACTTTAAATATTTCTAGGTCTCTCTTATTGGGTACTGAAT
AATTACAAACAACTAGTAACTAAacaattgaaaatatgatctaaGATTAT
TCTATAAATTAAACATATTTATGTGTTCCCTTCCTCTTATTCAATAATTG
CAAAATAATAATTGAACATACAGTATGTCCTATATAAATAATTCTATata
caaatttaatttatacTTATATCCTTTTCAGGCACTTTATTGTCATAAGA
ATAAGTCACCACATCAGCACTCTTCATGGCACTCTCAAAATCATTGCTTG
GGACCACTTCTTGTGATGTTTCCTCGGTCTTTTGAgttatatcaaaaaac
tttggtacaaattttttgagagggtaaaaaatcataatttctatCAAGAA
GAAACCACCTGCAACTATGGTCAGCCAGAATGGCCAGCCAAATTCTAAGC
TTCGCAGAGGGAAATCCAACAAATGTTGACTGAATAGCCGGCAAGCTCCA
CTAATGAG
Run BLAST on NCBI

protein sequence of TCONS_00068962-protein

>TCONS_00068962-protein ID=TCONS_00068962-protein|Name=TCONS_00068962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MVFESKMPHRRSQLLENLWGKLLFLSFHLTTFCLILILSWNVDNWIEITP
KRWVDVDQSSKHIFAVACGLPTLFLLVIIDMELFGVMPWRWKKKIFTLTF
IFAVLLFICSVLVVKNVNTLSYAPIYCHAKVQCGHLKAASAFGFLTSFCL
LGCSIALGAFIIGEN
Run BLAST on NCBI

transcript from alignment at scaffold_491:27310..30289+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068962 ID=TCONS_00068962|Name=TCONS_00068962|organism=Clytia hemisphaerica|type=transcript|length=2980bp|location=Sequence derived from alignment at scaffold_491:27310..30289+ (Clytia hemisphaerica)
ATTTTAAATAAAGGAATATATTCTCATTAATTGGTTTCCATGGAAGTTGC
AATACCTCTAACTAGTATattatgtaattaaaaagtaaGATCGTTCATCa
agaaattactttttttatCATCAGAATACATTATAGAGAGATGAGATTGT
TGGTGCAAAACAGATTTATGGGTTCAGTTTCTCCTGCACATTATAATGGT
ATTTGAAAGTAAAATGCCGCATCGACGAAGTCAACTTTTGGAAAACTTAT
GGGgaaaattactttttctaagCTTTGTGAGTAGTACTGACTTTTTAATT
CATtccattttgattttgtatgCTTTCTACTATGCAATATAATGAAGATT
ATATAGAAGGCCTGAAGATTGCCACAAAAGTGGcaaaagtggcatgaaac
taccaaaatattaaaatccaGGCTATAATTACTCCATATATTAATATACA
GGCTATATACAGAAGCAGCCAGTTTCCCTTTTCCATATATAATTACTTCA
GATCTTCATCATTTATAAAAACTTTGTTTTCAGCATTTGACAACGTTTTG
TCTCATCCTCATTCTTTCATGGAATGTTGATAATTGGATTGAGATAACTC
CCAAAAGATGGGTTGACGTAGATCAAAGCTCAAAGCATATCTTCGCTGTA
GCGTGTGGGCTTCCAACTTTATTTTTACTAGTGATCATTGATATGGAGCT
GTTTGGTGTCATGCCCTGGCGTTGGAAAAagaaggttctcttttttttta
tatttgctttattttatAACCCTGCCTTTTCGTCTCGCTGGGGGCGGGGT
GTACATGGGCAAAATgggtgatgggtatgtgcgagccataaggatccctt
tttcacacccttgaaagtcgctgcaagggttccaaaattaccaaaatcaa
aaatagaCATCCTCAAAgggtaataaatttttaaaatttggactaaaatt
tgaaaattttggctgaaatgtCGAAgaaatagtctctctaagggtggtaa
aaactacaaaaaatggacaaatttttcgaaattcagtgtctctaaagggt
cgattttcgaactttggctcggacatacccacCTCACAAACCTAGTACCA
CTCGTGTCTCATTGACATTGTAAGTTTTCTTACCCTAATGACTGGAGAAA
TGAGCTTGAAAAATCGGCCACTGAATAGGTGGCGAAGTTTCAATACATAG
CGTTACTTCGAGAGTGATGTAGAGGTTTTTTAATCCATCAATCACTACCA
TTCTGTTTTGTTTTAGTAGCCTATAGCTGAGACGGGGGTAAACTCACTTG
GATAATGCGATAAATAACCTCATTTCTTTTTCCTCttgttttttagattt
tcactCTGACCTTCATCTTTGCTGTTTTGCTGTTCATTTGTTCAGTCCTT
GTGGTGAAAAATGTCAACACCTTGAGTTATGCACCAATCTATTGTCATGC
GAAGGTACAGTGTGGGCATCTCAAAGCAGCATCTGTAAGTTATTTTACAC
TCGTTTTTTTTACTGAATGTACAGGgtacatcaaaaaaaaattctagttA
TGGTGTATAGTTTANTACTGAATGTACCGGGtacatcaaaataaaattct
agTTATGGTGTATAGTTTAAGGCATTGTTAATGGAAGGGACAATAACACT
CCGTTCTCACAGACCTACTggaaccccttcccactggaaaaattgacgaa
aatattttcccccagtggaaaattatattctaattcttgtctccactgaa
aataatcagataagcaaactCAAAAAATATTGTGGTATTTCTTCCATCTC
CACTGAATTTTATtgctcaaaaacaatggaattcaaatccgtAGCCATGA
AAAACATAGGAACATTAATCCCCATCGatttttggtccgttatttttacc
cccattgGCTGAagaaatcccaccgggtctgtgagaagggggtgtacaaG
AAAACttgacattcgagttatagaggttcgaattaaagagctcCCTCTGT
AAATCCTTGATTTATATTGATCTTGTCTTTGTTTTAGGCCTTCGGATTTT
TGACATCGTTTTGTTTACTGGGGTGTTCAATTGCATTGGGAGCGTTTATT
ATCGGTGAAAACTAAATGGAAAATGGTCACTTAAACTAAAGATGATcaca
aacaaacattttctaTTCACATACACGACTGTGCATAAGGAGTATTGCTT
TTTTGGAGGTGGTGGTAGCAGTCAATGGTGATTTGGAAGATTTGGAGACT
TTTCCCAAGAGTTTACGACTTATGCTGCCTTCCTGTTTCAGTGGATTTCG
TCTTTTTTTCAGTGAGGTTTTCTAGGTTCTTCTTCCTAGGTTCTTCACAC
AATGTATGgattttaatagatttttttctaaagaaaaataacagacaaaa
ttaaaataaaatttggattTTATATTCTTCTTTGAATGGAAAAATTATAA
AGTGCAAGTCCGAAGGAAGTTAAACTTATCTAACTTTAAATATTTCTAGG
TCTCTCTTATTGGGTACTGAATAATTACAAACAACTAGTAACTAAacaat
tgaaaatatgatctaaGATTATTCTATAAATTAAACATATTTATGTGTTC
CCTTCCTCTTATTCAATAATTGCAAAATAATAATTGAACATACAGTATGT
CCTATATAAATAATTCTATatacaaatttaatttatacTTATATCCTTTT
CAGGCACTTTATTGTCATAAGAATAAGTCACCACATCAGCACTCTTCATG
GCACTCTCAAAATCATTGCTTGGGACCACTTCTTGTGATGTTTCCTCGGT
CTTTTGAgttatatcaaaaaactttggtacaaattttttgagagggtaaa
aaatcataatttctatCAAGAAGAAACCACCTGCAACTATGGTCAGCCAG
AATGGCCAGCCAAATTCTAAGCTTCGCAGAGGGAAATCCAACAAATGTTG
ACTGAATAGCCGGCAAGCTCCACTAATGAG

Coding sequence (CDS) from alignment at scaffold_491:27310..30289+

>TCONS_00068962 ID=TCONS_00068962|Name=TCONS_00068962|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_491:27310..30289+ (Clytia hemisphaerica)
ATGGTATTTGAAAGTAAAATGCCGCATCGACGAAGTCAACTTTTGGAAAA
CTTATGGGgaaaattactttttctaagCTTTCATTTGACAACGTTTTGTC
TCATCCTCATTCTTTCATGGAATGTTGATAATTGGATTGAGATAACTCCC
AAAAGATGGGTTGACGTAGATCAAAGCTCAAAGCATATCTTCGCTGTAGC
GTGTGGGCTTCCAACTTTATTTTTACTAGTGATCATTGATATGGAGCTGT
TTGGTGTCATGCCCTGGCGTTGGAAAAagaagattttcactCTGACCTTC
ATCTTTGCTGTTTTGCTGTTCATTTGTTCAGTCCTTGTGGTGAAAAATGT
CAACACCTTGAGTTATGCACCAATCTATTGTCATGCGAAGGTACAGTGTG
GGCATCTCAAAGCAGCATCTGCCTTCGGATTTTTGACATCGTTTTGTTTA
CTGGGGTGTTCAATTGCATTGGGAGCGTTTATTATCGGTGAAAACTAAAT
GGTATTTGAAAGTAAAATGCCGCATCGACGAAGTCAACTTTTGGAAAACT
TATGGGgaaaattactttttctaagCTTTCATTTGACAACGTTTTGTCTC
ATCCTCATTCTTTCATGGAATGTTGATAATTGGATTGAGATAACTCCCAA
AAGATGGGTTGACGTAGATCAAAGCTCAAAGCATATCTTCGCTGTAGCGT
GTGGGCTTCCAACTTTATTTTTACTAGTGATCATTGATATGGAGCTGTTT
GGTGTCATGCCCTGGCGTTGGAAAAagaagattttcactCTGACCTTCAT
CTTTGCTGTTTTGCTGTTCATTTGTTCAGTCCTTGTGGTGAAAAATGTCA
ACACCTTGAGTTATGCACCAATCTATTGTCATGCGAAGGTACAGTGTGGG
CATCTCAAAGCAGCATCTGCCTTCGGATTTTTGACATCGTTTTGTTTACT
GGGGTGTTCAATTGCATTGGGAGCGTTTATTATCGGTGAAAACTAAATGG
TATTTGAAAGTAAAATGCCGCATCGACGAAGTCAACTTTTGGAAAACTTA
TGGGgaaaattactttttctaagCTTTCATTTGACAACGTTTTGTCTCAT
CCTCATTCTTTCATGGAATGTTGATAATTGGATTGAGATAACTCCCAAAA
GATGGGTTGACGTAGATCAAAGCTCAAAGCATATCTTCGCTGTAGCGTGT
GGGCTTCCAACTTTATTTTTACTAGTGATCATTGATATGGAGCTGTTTGG
TGTCATGCCCTGGCGTTGGAAAAagaagattttcactCTGACCTTCATCT
TTGCTGTTTTGCTGTTCATTTGTTCAGTCCTTGTGGTGAAAAATGTCAAC
ACCTTGAGTTATGCACCAATCTATTGTCATGCGAAGGTACAGTGTGGGCA
TCTCAAAGCAGCATCTGCCTTCGGATTTTTGACATCGTTTTGTTTACTGG
GGTGTTCAATTGCATTGGGAGCGTTTATTATCGGTGAAAACTAAATGGTA
TTTGAAAGTAAAATGCCGCATCGACGAAGTCAACTTTTGGAAAACTTATG
GGgaaaattactttttctaagCTTTCATTTGACAACGTTTTGTCTCATCC
TCATTCTTTCATGGAATGTTGATAATTGGATTGAGATAACTCCCAAAAGA
TGGGTTGACGTAGATCAAAGCTCAAAGCATATCTTCGCTGTAGCGTGTGG
GCTTCCAACTTTATTTTTACTAGTGATCATTGATATGGAGCTGTTTGGTG
TCATGCCCTGGCGTTGGAAAAagaagattttcactCTGACCTTCATCTTT
GCTGTTTTGCTGTTCATTTGTTCAGTCCTTGTGGTGAAAAATGTCAACAC
CTTGAGTTATGCACCAATCTATTGTCATGCGAAGGTACAGTGTGGGCATC
TCAAAGCAGCATCTGCCTTCGGATTTTTGACATCGTTTTGTTTACTGGGG
TGTTCAATTGCATTGGGAGCGTTTATTATCGGTGAAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042975XLOC_042975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068962-exon-scaffold_491-1491911889:27310..27585TCONS_00068962-exon-scaffold_491-1491911889:27310..27585Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1510915933:27310..27585TCONS_00068962-exon-scaffold_491-1510915933:27310..27585Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1575043694:27310..27585TCONS_00068962-exon-scaffold_491-1575043694:27310..27585Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1491911889:27843..28043TCONS_00068962-exon-scaffold_491-1491911889:27843..28043Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1510915933:27843..28043TCONS_00068962-exon-scaffold_491-1510915933:27843..28043Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1575043694:27843..28043TCONS_00068962-exon-scaffold_491-1575043694:27843..28043Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1491911889:28656..28793TCONS_00068962-exon-scaffold_491-1491911889:28656..28793Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1510915933:28656..28793TCONS_00068962-exon-scaffold_491-1510915933:28656..28793Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1575043694:28656..28793TCONS_00068962-exon-scaffold_491-1575043694:28656..28793Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1491911889:29347..30289TCONS_00068962-exon-scaffold_491-1491911889:29347..30289Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1510915933:29347..30289TCONS_00068962-exon-scaffold_491-1510915933:29347..30289Clytia hemisphaericaexon
TCONS_00068962-exon-scaffold_491-1575043694:29347..30289TCONS_00068962-exon-scaffold_491-1575043694:29347..30289Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068962-proteinTCONS_00068962-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:27310..30289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.28741	3.05187	2.91819	2.78853	0.0709321	0.0560515	0.854765	0.648612	2.50116	1.74156	2.02315	2.83836	7.86204	7.05067	4.08957	4.0925	0.670457	1.41739	5.82435	5.72756	0.791494	0.328531	1.87061	1.6745	0	0	2.9271	4.26292	0.554409	1.05003
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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