TCONS_00068953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068953
Unique NameTCONS_00068953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068953 ID=TCONS_00068953|Name=TCONS_00068953|organism=Clytia hemisphaerica|type=transcript|length=509bp
GTGATTGGCGCAAGACAACGGGAAGAAACATTCTCCAAACAAAACCACAT
CATCAGTGAGAAGTATGACTGTCATGCCAAAATATTGCAGTCCCTATCTG
TTGGAACCAACGTCGTCATCAAAACAGTAGTAAGAAACATCAACGTCAAT
GGATTTGCTCTGGGGTGATCGTAGAAACACTCCCTAACAGACAATACAGA
GTCAGAAGCAATGGCTCAGAGAGGGTGACACTGCAAAATCGTCGCTTCCT
TCGACCAGCAACATTTCTATCACCAACAGTACTACCCACACAAACCAATC
TGCTTCCATCCAGCTTCACCATCAACCTCACCATTCATTAGAGACTACTA
CCCCTTTAACCACTCCTCATCCAACAACTCCTATGCCTGCTCTTCCTCGG
CCTCAACACAAGTAACAGATTCCCAATTTTCGTCTTTCTTTTCCAGTTTG
TTTTTCTCATTCTGCTATTAAACTATTGATACTGTTGCTCGAGTTTGAGA
ATGTCTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_490:51616..52124

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068953 ID=TCONS_00068953|Name=TCONS_00068953|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at scaffold_490:51616..52124 (Clytia hemisphaerica)
TTCAGACATTCTCAAACTCGAGCAACAGTATCAATAGTTTAATAGCAGAA
TGAGAAAAACAAACTGGAAAAGAAAGACGAAAATTGGGAATCTGTTACTT
GTGTTGAGGCCGAGGAAGAGCAGGCATAGGAGTTGTTGGATGAGGAGTGG
TTAAAGGGGTAGTAGTCTCTAATGAATGGTGAGGTTGATGGTGAAGCTGG
ATGGAAGCAGATTGGTTTGTGTGGGTAGTACTGTTGGTGATAGAAATGTT
GCTGGTCGAAGGAAGCGACGATTTTGCAGTGTCACCCTCTCTGAGCCATT
GCTTCTGACTCTGTATTGTCTGTTAGGGAGTGTTTCTACGATCACCCCAG
AGCAAATCCATTGACGTTGATGTTTCTTACTACTGTTTTGATGACGACGT
TGGTTCCAACAGATAGGGACTGCAATATTTTGGCATGACAGTCATACTTC
TCACTGATGATGTGGTTTTGTTTGGAGAATGTTTCTTCCCGTTGTCTTGC
GCCAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042972XLOC_042972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068953-exon-scaffold_490-1491911889:51616..52124TCONS_00068953-exon-scaffold_490-1491911889:51616..52124Clytia hemisphaericaexon
TCONS_00068953-exon-scaffold_490-1510915933:51616..52124TCONS_00068953-exon-scaffold_490-1510915933:51616..52124Clytia hemisphaericaexon
TCONS_00068953-exon-scaffold_490-1575043694:51616..52124TCONS_00068953-exon-scaffold_490-1575043694:51616..52124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_490supercontigscaffold_490:51616..52124 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163529	0	0	0	1.50535	1.1261	2.43827	0.562234	0.879792	0.521226	2.03417	0.437408	0	0	0.873302	0.58574	0.0810826	0.622687	0	0	1.17513	0.860658	0.0947178	0.620846	0.848252	1.5826	0.760711	1.3681	0.842251	0.966476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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