TCONS_00068791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068791
Unique NameTCONS_00068791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068791 ID=TCONS_00068791|Name=TCONS_00068791|organism=Clytia hemisphaerica|type=transcript|length=1944bp
TCTTCATTTCGgctatttttgattttatttgccATAATACTAGCAGTTTC
ATATCTGATAGACTTATTTTTTTCAACCAGAAACTATACGGACGACTCGG
TTTTATCTGttCAGGTCTACATGTAATGAATGCAAGGATAATGTTGTAGa
ctcaaagaaaaagaaaaatgaaccaTTTTACAAGattgttGGCGTTTCTG
TCCGTCTTTGACGTAACGAAAGCTCAGAGTACTTGTGAAAAAGCCCAGTG
TAAAAAGCAGCTCTTCGATTTCCAGGCTATTCATGGTTCCTTGGTAAAAG
TGTCAGACAAGAAATTTGCTTTATGGACGGCCAGTAAAACACTCTCCCTC
ACAGGGAGTCAAGAAGAAAGAGAACGTTCTTGTTCGGAAGATTGTGTAAA
AGAAGGAAAAGACGTGTGTAGGAGTGCTCATTTGGAATCGTTTCAATCAG
AAGATACACCCTCCACCTGTGAGTTGTTCGTGGAAAATGTTTATGATCAT
TTGCCAAGTGTGTTGAGCACAATTCGAACTGATAGCACTGGTTGGACTTC
TTTTCATGTCTTGaattcatTTTGTGAAGATGCACCATGtcaaaatattg
gaaaatgtGTTCCCGATTTTGCGACCAATGAAGGTGTTTGCGAATGTACC
GGTTATTCGGGAAAATTCTGTCAAGATCTTAACCCCTTAGAAGAGGACGG
CTCGGTTTATTTCACATTCGATGATGGACAAATGAAGAATTTGGGAAGAA
GTGGCGATGTTTTAACTGAAGGAACTGGTGATGGTCTTGTTATGTATGAT
ATAGCACGAAACACAAGAGTCTTGCAATGCAATCTCACAAACTGTTTCGA
TTTTGGAGATGACACAAGTACTACATGCATGAAAAAGTACACAATGCCAT
ATTGTGCTGGTGGGATGACACTGGCTTTCTGGGTTCGCCTTTTGCGTGGG
GATGAAAACAGAGACGGTTTCATGCTGCTTATTGATCAAGGAGCTGGTGA
TGATAATGCTGGTATAGCCATTAATGTCAAGCCTGACAAAACAGAAATAA
ACATCTACATCAAGCTCCTTAACAACCGATTGAAATGTCAATTTACGAAT
ATTCCCAACGATATTTATCGCCAATGGTTTTTCTTGAGCATGTCTTTCCA
AAGAACGCCTTCAACAAAAATGGTTTGCTTCATGAATGAGGATCGTGTGG
AGGTGACAACATACAGCGCAACTACTTCTAATCCACCCACGTCCAAATTC
TTCCCTGGCGATGAAGGCAAATTCATGTTGGATGATATCCTCTATATTCC
CAAGTTTTCGACTGATGAAATGATTTCAACTTTCTATGATAAAAccaaat
caaattAAGCTAACCGGGTTTGACAGAATGGAGGTAAAGATTAATACCTA
TTCAAACTGTTTTATGCGAAAAAAATGTTGCGTGCTGGTAAGCGCAGTTG
TAATTAATTGAGTTACTGTGTGTGTCTTATCGCAGCATTGATAACAAACT
GAGTTGTCAGTTACGGGGTACGAAATGGCGTCCGTGGAAAAAGCAACTTT
GTTACCAAGTTATAATTTATTTAAGTAGTATTTCAAATGCACATTATTTA
AGTTTTTAAAGCATCCAGCAagtgattttattactttttcataTAGTTTT
CGGAAGCTCATATTGGGATTTTCCCGAGAACACTCTTATTTAGAAACGAA
ACCTTTAAAGAGAACACCAAATAATTCAAAACGAAATGttgtccacatag
tacgtacgcactaaaatgtcaaaaatcgaGTACCCAAACCCCCTTTGTAC
ACAAGCGTACGCATATGCCTAGACCCCCTAGTTAGTACATACTTTTTCCA
TCCCCGCCCCCTTAACTAAAAGATTAAGGTGCAAATCGTCTGGTAAAATA
TGAGTGTTTCATTAAgcattactcttaggtgccaaataaacgcc
Run BLAST on NCBI

transcript from alignment at scaffold_49:454255..460869+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068791 ID=TCONS_00068791|Name=TCONS_00068791|organism=Clytia hemisphaerica|type=transcript|length=6615bp|location=Sequence derived from alignment at scaffold_49:454255..460869+ (Clytia hemisphaerica)
TCTTCATTTCGgctatttttgattttatttgccATAATACTAGCAGTTTC
ATATCTGATAGACTTATTTTTTTCAACCAGAAACTATACGGACGACTCGG
TTTTATCTGGTAACAGTATGGaaataattatattaaattgtcgctgtttt
tctttaaattttacttttggaatggcaaaatttcaaagaaaattatatta
aatagTTATAATTAACAGTTATTAAGAGAATTAATTTTTGCAGGAACTAA
CTTTCGccgaactaattttcgcggaactGATTTTCGCGTTTTTATGTGTC
TACCACGAAAATTGGTTCCACGAAACACGATTTTTACTTACAATGTGTAA
AAACCcttatgaaaatgaaataatttcgGCAAAAAAGGGTAGCcgccgcg
aaaattagttccacaaaaattagttaccgcgaaaaaaaaatctataagaG
AACTTGaccttgttgttgttttttttagttCAGGTCTACATGTAATGAAT
GCAAGGATAATGTTGTAGactcaaagaaaaagaaaaatgaaccaTTTTAC
AAGGTGAGTCCTGATGATATTAATATACAtattatcggagtttttgattt
ttctaaaaaagcgatgcattgtgggattgtttcgggagtataacaataga
aatctcataggaattcctcgagggaattctattgtaatacccccgaaaca
atcccacaaggcatcgctttttttagaaaaatcaaaaactccgataagat
ctatttcaATAAGATTAATTTTCACAGGATTAAAAACAGTACTTGAATTT
CCTTTAGAAAGTTTAATCATAGAAAACCAAAGTgctttaaagatattcaa
aaaaatttggaggGTTAATACTCGGCAAAATCCAAAAAGCCAATTGAGTT
AAACTAAAAAGGTTAAAATTTCTGGatcaatttttcagattttttgcaga
agCGTGCGCTTGTTGGCCAAGGCCTTTTTTAACCATAGCGGGATGAGAGG
GTAGGCAGGGCGAcccagtacacgttttttttttgcgaaactAGTTTTAc
aaagcagcctcaatgtttcttaaggagtcggccttttgagccttaaatgt
ttcttacatgtttctaaactgtttgacataatcagcctcatggaaggctg
cattagaaggttcttaaaagaaacctaattaaaaaatgttattttctcat
tctcagcatcagcatgtttcttagacgtctcttagtttttaggcattctg
agcctcctcatgtttcttaaaagtgtgtttcttaaaaaaaaaaaacgtgt
acgctaTCAGTTGAAATTTTTCGATTGATTCTTTTTCAGGTTTTGAAGCA
TCCTTACggtatttcaatgtttttcttttttagattgttGGCGTTTCTGT
CCGTCTTTGACGTAACGAAAGCTCAGAGTACTTGTGAAAAAGCCCAGTGT
AAAAAGCAGCTCTTCGATTTCCAGGCTATTCATGGTTCCTTGGTAAAAGT
GTCAGACAAGAAATTTGCTTTATGGACGGCCAGTAAAACACTCTCCCTCA
CAGGGAGTCAAGAAGAAAGAGAACGTTCTTGTTCGGAAGATTGTGTAAAA
GAAGGAAAAGACGTGTGTAGGAGTGCTCATTTGGAATCGTTTCAATCAGA
AGATACACCCTCCACCTGTGAGTTGTTCGTGGAAAATGTTTATGATCATT
TGCCAAGTGTGTTGAGCACAATTCGAACTGATAGCACTGGTTGGACTTCT
TTTCATGTCTTGGTAAGAATTCAACAGTAGTTTAAAGGgatatatattat
ttttcttttgtaatcTAACATTTATAAaagcaggctcagtttttggtacc
taaacaatggctctattgtttgagaacaatagaatgctaagcataatgcg
agcctgatataacGATAGACACTTGCTTAAAAGAACATGTAATCAGATTG
TGGGATATTCCAAGAAATGGTCAACCACGATATGTTTGATTTAACCACCA
TCTATGGGTACATGGTGCATGGGTCGTAGCGCTATCCAGTCAAAATGAAT
TTGGCGATTTGGCGTAACGTGCCCCTCTCCATGGAATGGTCGTTGTTTTA
GATATTTGGCATAtcaaatgggccattccattttatatccaaacaggagg
gtggacgaacatttccaggggtaaTCAGAAAAAATGCCCAGGGGgtataa
aaaagtattttttcatgtttccagggggtataaggttattccaaaatttc
cagggggcaaaagactgattttagttcattCACTCTCACTTTTAagatat
aaaaataatttttccaatggttcttttgcaaattttgaaatttttcaggg
GGTGTTCACATTTCTATAAATCTTTATTTGCCTTGAATAGGTTtgtcccc
cccccctgtttagaAATTgtatggaacagcccaatccGTCTATATATCGT
GAGGAAAAGCTCATACCATCTGATTATTATCCCTTTAACTTAGCTTTGAA
TTGAATATGAAAATTAGTATTTGAGGATATTAAGCAAACTAGTCTAATCA
ATCATGTCAGAGGGTGGGAACATAAAGGcagcgggcgtttgctagaatag
gaacTGCGTAGGAGAATGAACAacagttggtgagaggctgctgattaaca
aGGGCTTTCAGCCCTTCccttcttcctacgcttactacgttcacttttcc
cgcgtgataccgttccagcctgACTGGCGTGTCAGTCTACGGAACtggtt
gattttctttgttctCGTGCGGGACTTATGAAATAGCgcagttttttttc
ataacgtcagcctgggtttaggtcccaggtaAAAATTAGGTTCCCCCTGA
GTTTcaagtccccccaaagatttatgaattttttgttagcccccaggact
tttgaccctagacactttcaaaaaactgatcCAGTAAAAAGgggttttcc
aatgtaaattgcgttcagttctaagtctaagataaaatattttgcacact
ttctataaaaaaattgtgccgcattcaaaaaaatttcagattcacgagct
tcaatttgagtaattgaagccaactattaagaTTCAAAGCAGTTAAAAAA
GGTTATACCTCAATTTTACCCAAGAAAATATAAGGGAGGGTCAAACGATT
AAgttcaaagcacaaaatatttttctcttaaaGTCTCTCGAGTTCGCAAA
GCATTtagaatgacagattgaatctagtgctttctttgttttcactcGGC
ATATTTTCAGATGagatgaagtttttataagatactttaataattggtca
tttgaagtaagaAAAATGACGcgctctttagaaaaagtaacaaaattgtt
ttattactggttaacaaccaatcaaatcaaataagagttTATAAAGTCCA
TCTCGTCCCcatatttttcaagatttcactTTTAATCTGACGTTTGCTTG
AAAACCACGCGCTTCATGCGCAATAAGTCAAACACCTTCCACtagaataa
tcttttttttaagaattcatTTTGTGAAGATGCACCATGtcaaaatattg
gaaaatgtGTTCCCGATTTTGCGACCAATGAAGGTGTTTGCGAATGTACC
GGTTATTCGGGAAAATTCTGTCAAGATCTTAGTaagtaacccagctggca
cacaacgttgttttataacgttcatataacgttatatggacgttatgaac
tttggatgaatgttgaaacaatgttttgtGCCAGCTTTGGGAACCTATTT
GCCAAGCCTCGGTTTGTTCATCAGTAGCATGTCACTGTCTATGGTGCTGT
ATGTCCGTCTTTGAAGGAACAGCGCTTTTTTAATGACCACACGACAAAGA
CCCTGAAATCTATCCAATATTGAAAAATACATACTTACTTCAGTTGAGAT
CAAAACAGCTTTTTCCAGTTACTGAATATTGCATTTTTATCGTTTACCAG
ACCCCTTAGAAGAGGACGGCTCGGTTTATTTCACATTCGATGATGGACAA
ATGAAGAATTTGGGAAGAAGTGGCGATGTTTTAACTGAAGGAACTGGTGA
TGGTCTTGTTATGTATGATATAGCACGAAACACAAGAGTCTTGCAATGCA
ATCTCACAAACTGTTTCGATTTTGGAGATGACACAAGTACTACATGCATG
AAGTGAGTTTTTGTTATAAACAATAGGGTATTAGGGTATTGAGCGCTCTC
AACCAACTACAGGATGTCCGTAAAAAAAGTATCGAATCGAAACACAGCTA
TAAGTAAAACGTTTTTCAACTGCCTGAAGAGGGCGGTTTTAACAGTGTAG
ATGTATAAGTAAAATCtcgtttttaaattgaaataaatttttgactCACT
TATCTCTATGATATAAACACATTACTTTCCTTACATCTTATCTGGGTATG
AGagcttttaatatttttgtaacgtCCCTTCCTCAATATTTATCAGTCAA
GAACACgatcaaattagcctatcatagagTAATTAGACTACTATTTTAAA
TAGTATGATTTGccgaaaatcaacaaaaatgtcGATTGCTGAAtatcaaa
gtcagaaaatcggGCATAAAAATGCAAAATGGCGGCAGTAAGGAAGATGG
GTTTGACCAgggaaaatggaaaatttgaaattaacaaaaaaatagaaact
gataataaaaatttaattacctTTTTGCCCTGAAGATTTTCCACCTCGAC
TTCTTTTAAACTGGTGTACTTGaagctttatttttctaaaacaaagACTG
GTTTCGGAATGAATTTTTCACCGTAAAAAGCCTTCAGTTAATCCAAAATT
TAAGCTGAAGAAGTTTATTGTTTTTTCGTAAGTCGAGTTTACTTACTTTA
ACCCAATTGATCATGCATCGGGAATCTTGTGCAAGGGGATTGGGTACCAT
CACTCTGTAGAGACTCCTCTTTGTTATATTACATTATCGTGGTTTGGGAA
ATCTGTTGATTGCCtacttttaaacattgaatatctgttttgaaatattg
aaatgaaTTATAAAAAGCTAGGTGAATTGTCACCATATTAAAATAAATCA
TAACACACTTTTCTTAGTTTGTGAGATTGCATTGCAAGACTCTTGTGTTT
CGTGCTATATCATATATAGCAAGACCATCGCCAGTTCCTTCAGTCAAAAC
ATCGCCACTTCTTCCCAAATTTTTTGCATTACAGTAATTATTGTATTAAA
ATTCTATGTATTTTAGAAAGTACACAATGCCATATTGTGCTGGTGGGATG
ACACTGGCTTTCTGGGTTCGCCTTTTGCGTGGGGATGAAAACAGAGACGG
TTTCATGCTGCTTATTGATCAAGGAGCTGGTGATGATAATGCTGGTATAG
CCATTAATGTCAAGCCTGACAAAACAGAAATAAACATCTACATCAAGCTC
CTTAACAACCGATTGAAATGTCAATTTACGAATATTCCCAACGATATTTA
TCGCCAATGGTTTTTCTTGAGCATGTCTTTCCAAAGAACGCCTTCAACAA
AAATGGTTTGCTTCATGAATGAGGATCGTGTGGAGGTGACAACATACAGC
GCAACTACTTCTAATCCACCCACGTCCAAATTCTTCCCTGGCGATGAAGG
CAAATTCATGTTGGATGATATCCTCTATATTCCCAAGTTTTCGACTGATG
AAATGATTTCAACTTTCTATGATAAAAGTAAGTTTTTATCCGTCCTTTTG
AACAAGACCTAATTAGCGGTGGATTAAATTTAGggctgatgaaaaaaaaa
atcttcacatCATCCTCTTACAAGCTAATACTACATTTACGGCTACCATA
TTAAGACACAATCCAATATTTTCTAGATCGAACTATCAAGATACTATTTT
TTCAGAGGTAGATCTGATTCAAATTTTATGCATAAATGGTAGAAAGCACA
TTCAagtcttcattttattttgttcGATGATTTGTACTGAGACTTTTTAA
TATGGAACCGTCGTAGTTTGTTTCCgttcacacttttttataattttttt
taatcttcatttcagccaaatcaaattAAGCTAACCGGGTTTGACAGAAT
GGAGGTAAAGATTAATACCTATTCAAACTGTTTTATGCGAAAAAAATGTT
GCGTGCTGGTAAGCGCAGTTGTAATTAATTGAGTTACTGTGTGTGTCTTA
TCGCAGCATTGATAACAAACTGAGTTGTCAGTTACGGGGTACGAAATGGC
GTCCGTGGAAAAAGCAACTTTGTTACCAAGTTATAATTTATTTAAGTAGT
ATTTCAAATGCACATTATTTAAGTTTTTAAAGCATCCAGCAagtgatttt
attactttttcataTAGTTTTCGGAAGCTCATATTGGGATTTTCCCGAGA
ACACTCTTATTTAGAAACGAAACCTTTAAAGAGAACACCAAATAATTCAA
AACGAAATGttgtccacatagtacgtacgcactaaaatgtcaaaaatcga
GTACCCAAACCCCCTTTGTACACAAGCGTACGCATATGCCTAGACCCCCT
AGTTAGTACATACTTTTTCCATCCCCGCCCCCTTAACTAAAAGATTAAGG
TGCAAATCGTCTGGTAAAATATGAGTGTTTCATTAAgcattactcttagg
tgccaaataaacgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042896XLOC_042896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068791-exon-scaffold_49-1491911889:454255..454363TCONS_00068791-exon-scaffold_49-1491911889:454255..454363Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1510915933:454255..454363TCONS_00068791-exon-scaffold_49-1510915933:454255..454363Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1575043694:454255..454363TCONS_00068791-exon-scaffold_49-1575043694:454255..454363Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1491911889:454733..454807TCONS_00068791-exon-scaffold_49-1491911889:454733..454807Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1510915933:454733..454807TCONS_00068791-exon-scaffold_49-1510915933:454733..454807Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1575043694:454733..454807TCONS_00068791-exon-scaffold_49-1575043694:454733..454807Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1491911889:455638..456016TCONS_00068791-exon-scaffold_49-1491911889:455638..456016Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1510915933:455638..456016TCONS_00068791-exon-scaffold_49-1510915933:455638..456016Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1575043694:455638..456016TCONS_00068791-exon-scaffold_49-1575043694:455638..456016Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1491911889:457768..457885TCONS_00068791-exon-scaffold_49-1491911889:457768..457885Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1510915933:457768..457885TCONS_00068791-exon-scaffold_49-1510915933:457768..457885Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1575043694:457768..457885TCONS_00068791-exon-scaffold_49-1575043694:457768..457885Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1491911889:458205..458406TCONS_00068791-exon-scaffold_49-1491911889:458205..458406Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1510915933:458205..458406TCONS_00068791-exon-scaffold_49-1510915933:458205..458406Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1575043694:458205..458406TCONS_00068791-exon-scaffold_49-1575043694:458205..458406Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1491911889:459471..459931TCONS_00068791-exon-scaffold_49-1491911889:459471..459931Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1510915933:459471..459931TCONS_00068791-exon-scaffold_49-1510915933:459471..459931Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1575043694:459471..459931TCONS_00068791-exon-scaffold_49-1575043694:459471..459931Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1491911889:460270..460869TCONS_00068791-exon-scaffold_49-1491911889:460270..460869Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1510915933:460270..460869TCONS_00068791-exon-scaffold_49-1510915933:460270..460869Clytia hemisphaericaexon
TCONS_00068791-exon-scaffold_49-1575043694:460270..460869TCONS_00068791-exon-scaffold_49-1575043694:460270..460869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:454255..460869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0147034	0.00944131	0.0179046	0.0132171	0.00601682	0.0022794	0.00299476	0.00495465	0.273769	0.00267605	0.006315	0.00540054	2.23058	0.0194802	0.0172193	0.0183154	2.06185	2.72884	0.0976123	4.2234	9.86337	7.98309	3.66429	8.72561	0.142379	0.221974	0.408466	0.00431989	0.00403232	0.00485643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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