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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068691 ID=TCONS_00068691|Name=TCONS_00068691|organism=Clytia hemisphaerica|type=transcript|length=1924bp
ttcaaattatttattttgataaatcttcaaaattaaaataatggGATAAA
TTCATCTTTTGTCATGCGTCATAAATAATTCGAAtatgaatgaaataaaa
aatatgcattttaaaaatttcacgaAACTAAGCTATTTACAAAAGGGTAA
ACACACAAAGAATGATATGGCTCAAATGAAGAACACAATACTCAAGTTCA
AGATTGATGGGGGTTAATAAAGTCCATCCCCGGCCCCTTTACTGAAACAT
AGAAGATTTGCAATTTACAAAACAGTACCAGCCTGTTattcaaatcttca
aaaaaaatcaagtaactatcccatcccagctggcacacaatgttgtttca
acgtccatgtaatgttcacaacgtccatttgacgttagaggaacgttgaa
acaacgttgtgttacAGCTGGGAAAAAAGGGTGAGTTATTACTTTCtaaa
gaaagtgaaaaacaaAAGTTTACAAATCTAAGTCCAGTTGGACTTTCCAC
TCGATTCTTTCTCGCTCTTTCTTAATACTGTCCACAAACACATGACATTC
ATTGCACATGCTCAGTCGAACACCTTTCACTTTAGCGTCTCTTTGCCATG
GTAACTGTTTGATTGTTGTAGAGGGTCCAACATGGAGCATACTTTTAGAC
CGTACAAGGTTGGAAGACGGTTGATTTGCATTATATGTGACGTCAACATT
GGGAGGAAGAGTTTCGGTTAAAGATGGCGGAATTGGAACGTTTTCTGTCA
AACAGTTGATGCAGTATTTCTTCTTACATACAGCGCACATTCTAGCTCGT
TGGAAAAATGTGAATTTGTTTTTGTGGCAACcgaaacattttttctgttt
taacaCATCCTGATCTTGACTGAACTGTAACTCCGCTCTGGTCAGTTCTT
GTCTGATTTTGAAGATCTCAGTCAAGCTTGCACCAACTTTGCATAAATCT
TCTTGCTCGAAATTCTCTGTGGTTATCTCATCAATGTCTATTTGATGTAA
ACACatttcacttttcgaaatcctttTCTTATGGCTGGATAGCACAGGTG
CTGTAAATCTTCTCAATGATGACATTGAATCTGAAAAATCGTCTAACTCA
AGTTCAGTATCAATTTTATTGTCAGTGTTTTTATCATCACTAGTTTCGAA
GTTTCCATCCAAAAAGTCTTTCTCTAAAGTGTCATCCAAGCTATATTGGT
CCCAATCGGAGATTTTTCTAACTAACTTATCATGGACACcgagtttcttt
ttctttgacgGAACTTTGGTTTGTGGTTCAAAGTCTAGATCATCTAGGTC
ATCCAGGCTATCTGGAGTCATGGATCGTGAAGTGTTTAACTCATCGTGAC
TTGAGACTCTAGAtttcagaaaatcaaagatTCGGCTTTCAGCGTCTTCA
GGGAGTGTTTCAAGATCATCAAGCGATTTCGAAGATTTGATCGAAGCTTG
TAATTCTTCAGTGTTCTCTAAGTTTTCTCTAGTGAATGGTGTACATTTGT
AATATTCAGTCTCTGGAGCGATAATTTCTGCTGATTCATCAGTTTGTGTT
TTGATCTCTTTCGTTTTCTGCCTTACCTCACCCATAACTTCAATCCACAG
TTTAGCCCACTCTTTAATATACGTTTTAGTCTGGAAACTATAAGTTGTCG
GTTTTTCGGAAGTGTCTAAATCGTGCAAAACATGCCCTAAGAATGCTTTT
AGTTCAGATGCTTCTAAGTAAAGAGCTTGCGATACGTTCGAGTAATGATT
TCCTATGCATTCGATATTCTTTCGTAATAATCGTGCTTCACAGAATCGTA
AAACTTCAACCAACGATTTGAAACTTCGTAAAGAATcggattttttgttt
tcactccAATTTTCACCGAGGCTGTCAGTATCACCTATTCCTTCATCGAA
TTCATTGCTCTGTAGCACCATTCC Run BLAST on NCBI transcript from alignment at scaffold_487:48971..51403+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068691 ID=TCONS_00068691|Name=TCONS_00068691|organism=Clytia hemisphaerica|type=transcript|length=2433bp|location=Sequence derived from alignment at scaffold_487:48971..51403+ (Clytia hemisphaerica)
ttcaaattatttattttgataaatcttcaaaattaaaataatggGATAAA
TTCATCTTTTGTCATGCGTCATAAATAATTCGAAtatgaatgaaataaaa
aatatgcattttaaaaatttcacgaAACTAAGCTATTTACAAAAGGGTAA
ACACACAAAGAATGATATGGCTCAAATGAAGAACACAATACTCAAGTTCA
AGATTGATGGGGGTTAATAAAGTCCATCCCCGGCCCCTTTACTGAAACAT
AGAAGATTTGCAATTTACAAAACAGTACCAGCCTGTTattcaaatcttca
aaaaaaatcaagtaactatcccatcccagctggcacacaatgttgtttca
acgtccatgtaatgttcacaacgtccatttgacgttagaggaacgttgaa
acaacgttgtgttacAGCTGGGAAAAAAGGGTGAGTTATTACTTTCtaaa
gaaagtgaaaaacaaAAGTTTACAAATCTAAGTCCAGTTGGACTTTCCAC
TCGATTCTTTCTCGCTCTTTCTTAATACTGTCCACAAACACATGACATTC
ATTGCACATGCTCAGTCGAACACCTTTCACTTTAGCGTCTCTTTGCCATG
GTAACTGTTTGATTGTTGTAGAGGGTCCAACATGGAGCATACTTTTAGAC
CGTACAAGGTTGGAAGACGGTTGATTTGCATTATATGTGACGTCAACATT
GGGAGGAAGAGTTTCGGTTAAAGATGGCGGAATTGGAACGTTTTCTGTCA
AACAGTTGATGCAGTATTTCTTCTTACATACAGCGCACATTCTAGCTCGT
TGGAAAAATGTGAATTTGTTTTTGTGGCAACcgaaacattttttctgttt
taacaCATCCTGATCTTGACTGAACTGTAACTCCGCTCTGGTCAGTTCTT
GTCTGATTTTGAAGATCTCAGTCAAGCTTGCACCAACTTTGCATAAATCT
TCTTGCTCGAAATTCTCTGTGGTTATCTCATCAATGTCTATTTGATGTAA
ACACatttcacttttcgaaatcctttTCTTATGGCTGGATAGCACAGGTG
CTGTAAATCTTCTCAATGATGACATTGAATCTGAAAAATCGTCTAACTCA
AGTTCAGTATCAATTTTATTGTCAGTGTTTTTATCATCACTAGTTTCGAA
GTTTCCATCCAAAAAGTCTTTCTCTAAAGTGTCATCCAAGCTATATTGGT
CCCAATCGGAGATTTTTCTAACTAACTTATCATGGACACcgagtttcttt
ttctttgacgGAACTTTGGTTTGTGGTTCAAAGTCTAGATCATCTAGGTC
ATCCAGGCTATCTGGAGTCATGGATCGTGAAGTGTTTAACTCATCGTGAC
TTGAGACTCTAGAtttcagaaaatcaaagatTCGGCTTTCAGCGTCTTCA
GGGAGTGTTTCAAGATCATCAAGCGATTTCGAAGATTTGATCGAAGCTTG
TAATTCTTCAGTGTTCTCTAAGTTTTCTCTAGTGAATGGTGTACATTTGT
AATATTCAGTCTCTGGAGCGATAATTTCTGCTGATTCATCAGTTTGTGTT
TTGATCTCTTTCGTTTTCTGCCTTACCTCACCCATAACTTCAATCCACAG
TTTAGCCCACTCTTTAATATACGTTTTAGTCTGGAAACTATAAGTTGTCG
GTTTTTCGGAAGTGTCTAAATCGTGCAAAACATGCCNGTGTCATCCAAGC
TATATTGGTCCCAATCGGAGATTTTTCTAACTAACTTATCATGGACACcg
agtttctttttctttgacgGAACTTTGGTTTGTGGTTCAAAGTCTAGATC
ATCTAGGTCATCCAGGCTATCTGGAGTCATGGATCGTGAAGTGTTTAACT
CATCGTGACTTGAGACTCTAGAtttcagaaaatcaaagatTCGGCTTTCA
GCGTCTTCAGGGAGTGTTTCAAGATCATCAAGCGATTTCGAAGATTTGAT
CGAAGCTTGTAATTCTTCAGTGTTCTCTAAGTTTTCTCTAGTGAATGGTG
TACATTTGTAATATTCAGTCTCTGGAGCGATAATTTCTGCTGATTCATCA
GTTTGTGTTTTGATCTCTTTCGTTTTCTGCCTTACCTCACCCATAACTTC
GATCCACAGTTTAGCCCACTCTTTTATGTACGTTTTAGTCTGGAAACTAT
AAGTTGTCGGTTTTTCGGAAGTGTCTAAATCGTGCAAAACATGCCCTAAG
AATGCTTTTAGTTCAGATGCTTCTAAGTAAAGAGCTTGCGATACGTTCGA
GTAATGATTTCCTATGCATTCGATATTCTTTCGTAATAATCGTGCTTCAC
AGAATCGTAAAACTTCAACCAACGATTTGAAACTTCGTAAAGAATcggat
tttttgttttcactccAATTTTCACCGAGGCTGTCAGTATCACCTATTCC
TTCATCGAATTCATTGCTCTGTAGCACCATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068691-exon-scaffold_487-1491911889:48971..50651 | TCONS_00068691-exon-scaffold_487-1491911889:48971..50651 | Clytia hemisphaerica | exon |
| TCONS_00068691-exon-scaffold_487-1510915933:48971..50651 | TCONS_00068691-exon-scaffold_487-1510915933:48971..50651 | Clytia hemisphaerica | exon |
| TCONS_00068691-exon-scaffold_487-1575043694:48971..50651 | TCONS_00068691-exon-scaffold_487-1575043694:48971..50651 | Clytia hemisphaerica | exon |
| TCONS_00068691-exon-scaffold_487-1491911889:51161..51403 | TCONS_00068691-exon-scaffold_487-1491911889:51161..51403 | Clytia hemisphaerica | exon |
| TCONS_00068691-exon-scaffold_487-1510915933:51161..51403 | TCONS_00068691-exon-scaffold_487-1510915933:51161..51403 | Clytia hemisphaerica | exon |
| TCONS_00068691-exon-scaffold_487-1575043694:51161..51403 | TCONS_00068691-exon-scaffold_487-1575043694:51161..51403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:48971..51403 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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