|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068497 ID=TCONS_00068497|Name=TCONS_00068497|organism=Clytia hemisphaerica|type=transcript|length=1096bp
aatgaaattttcttgcaaaataacaaacaaaaaagtaaaatcaactcAGT
CTTTCACGATATTTCGTTCGTTTGCAGAACTTCGCCAGATCTTCATCAGG
TATGAACTTTCCTTGGATatgattaacaaaaatattgaaaaatagcCATC
GGGCGTAGACATTCGAGGAAGACTTTGAAAGATTTAGAAaattagatatt
tcaaaatgaaatggAAACAGATAATGAGTTTTCAATTTAAATACGCTCtt
aaaaatgttcgaaaaagAAGATTAAAAAGAGAAAGGAAAATCATATTTTC
AGAGCTTtcattttaagcttaaaaatcaaCCAATTGAAAGATCAATACAG
AAAAGGCTCGAAAAGAATTGCCAGAtgcttaaaaatcgctagcgaaaatg
CACCATGAGAGAATTGCAGAGTTCTGATTTAaacgtattataatatagat
aatAAATGATTTAAATGAAATGGTTTGGAGTTTCCAGTGTCGAATAACGT
AAATTCGTTGCATTGAATTGCTTGAAAAAACTTTATTCGACCCTGGTAAA
CTGGAGCCCATTCCCCTACGACGTGAAGGTTGATATATGCTTATGACTCA
TGATATGGATATGAATAGGATGATTTAATATCAAACAAATGGGGATTGGG
ACAAACTTTGTCTCGGTAGAAATCTTTAAACCTATTGTATTTACTacctt
aaagaaagaaattttggtgagAATTTAATTCgacggatggccgaaaaagg
gaatttaatttgacatcATAAgtcatccgccaaaatttcttcccttaagg
tattgtTTAAGAATAACTGTGTTACTTTTTAGTGTTATGAAGTGTTTTAC
TTTAGTTTGGCGGAACCCTCCTCCTCTTGAACGTAATTTACTTTTCATGA
AAGTGGTACATGCGATACATCCATTAATACAAAGCTTGTTCAGATTTCTT
TACGACTTAGAGTAACTGACCGACCCAGGATCGTTCGAAGATTGGTTCTT
TTTCCAGCAAGCACCAATGGCAATCAACAACGCGCCTAAACAGCCACACA
CAATACCAGCGATCGCTCCTCCACTCAAACCACCTGATGATGTTGA Run BLAST on NCBI transcript from alignment at scaffold_485:341383..342549+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068497 ID=TCONS_00068497|Name=TCONS_00068497|organism=Clytia hemisphaerica|type=transcript|length=1167bp|location=Sequence derived from alignment at scaffold_485:341383..342549+ (Clytia hemisphaerica)
aatgaaattttcttgcaaaataacaaacaaaaaagtaaaatcaactcAGT
CTTTCACGATATTTCGTTCGTTTGCAGAACTTCGCCAGATCTTCATCAGG
TATGAACATTCCTTGGATATGATTNCACGATATTTCGTTCTCTTGCAGAA
CTTCGCCAGATCTTCATCAGGTATGAACTTTCCTTGGATatgattaacaa
aaatattgaaaaatagcCATCGGGCGTAGACATTCGAGGAAGACTTTGAA
AGATTTAGAAaattagatatttcaaaatgaaatggAAACAGATAATGAGT
TTTCAATTTAAATACGCTCttaaaaatgttcgaaaaagAAGATTAAAAAG
AGAAAGGAAAATCATATTTTCAGAGCTTtcattttaagcttaaaaatcaa
CCAATTGAAAGATCAATACAGAAAAGGCTCGAAAAGAATTGCCAGAtgct
taaaaatcgctagcgaaaatgCACCATGAGAGAATTGCAGAGTTCTGATT
TAaacgtattataatatagataatAAATGATTTAAATGAAATGGTTTGGA
GTTTCCAGTGTCGAATAACGTAAATTCGTTGCATTGAATTGCTTGAAAAA
ACTTTATTCGACCCTGGTAAACTGGAGCCCATTCCCCTACGACGTGAAGG
TTGATATATGCTTATGACTCATGATATGGATATGAATAGGATGATTTAAT
ATCAAACAAATGGGGATTGGGACAAACTTTGTCTCGGTAGAAATCTTTAA
ACCTATTGTATTTACTaccttaaagaaagaaattttggtgagAATTTAAT
TCgacggatggccgaaaaagggaatttaatttgacatcATAAgtcatccg
ccaaaatttcttcccttaaggtattgtTTAAGAATAACTGTGTTACTTTT
TAGTGTTATGAAGTGTTTTACTTTAGTTTGGCGGAACCCTCCTCCTCTTG
AACGTAATTTACTTTTCATGAAAGTGGTACATGCGATACATCCATTAATA
CAAAGCTTGTTCAGATTTCTTTACGACTTAGAGTAACTGACCGACCCAGG
ATCGTTCGAAGATTGGTTCTTTTTCCAGCAAGCACCAATGGCAATCAACA
ACGCGCCTAAACAGCCACACACAATACCAGCGATCGCTCCTCCACTCAAA
CCACCTGATGATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068497-exon-scaffold_485-1491911889:341383..341481 | TCONS_00068497-exon-scaffold_485-1491911889:341383..341481 | Clytia hemisphaerica | exon |
| TCONS_00068497-exon-scaffold_485-1510915933:341383..341481 | TCONS_00068497-exon-scaffold_485-1510915933:341383..341481 | Clytia hemisphaerica | exon |
| TCONS_00068497-exon-scaffold_485-1575043694:341383..341481 | TCONS_00068497-exon-scaffold_485-1575043694:341383..341481 | Clytia hemisphaerica | exon |
| TCONS_00068497-exon-scaffold_485-1491911889:341553..342549 | TCONS_00068497-exon-scaffold_485-1491911889:341553..342549 | Clytia hemisphaerica | exon |
| TCONS_00068497-exon-scaffold_485-1510915933:341553..342549 | TCONS_00068497-exon-scaffold_485-1510915933:341553..342549 | Clytia hemisphaerica | exon |
| TCONS_00068497-exon-scaffold_485-1575043694:341553..342549 | TCONS_00068497-exon-scaffold_485-1575043694:341553..342549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:341383..342549 + |
Blast
The following BLAST results are available for this feature:
|
