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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068432 ID=TCONS_00068432|Name=TCONS_00068432|organism=Clytia hemisphaerica|type=transcript|length=1255bp
CGCGCGCATGTGTGAACCTCAAAAgcggaccttattttcggctctcgggg
gtattggccctaccgcgTCGCCGAATTTCGACTTGAACTAACttcaaaat
tatcaatatttaaaaacatttggtaAGGCTACTTTGTAGCCTTTATATGc
ccattttgtaaaaatcttaaNAAAACATTTGGTAAGGCTACTTTGTAGCC
TTTATATGcccattttgtaaaaatcttaatttttgtgAGTTTCCCAGgga
ttttagcctggaaatcgGAAATCTGGTCATAACTTTTCAATGGAGTATGT
TCCTGCTCTGATTTTTTCACATATTGTTCATGAAATGATATTCTTTATGT
TAtgtctatataaaaatttttgacattctgaaaacttcattttttgccat
ttttcagattttttgggacaagctttttgcttattgctagtgctgcaaat
aaggaaatttcagttggccggtaTTTTTTTGAGCGCAACGAAGATAAATT
GAGCAGGGGCACCCGAAATGAAAGATTGAGCTTCAGAATGCCCGGTAGAA
ACTACTTAATGATCGGTAATTACCGAttgacaAATTAGAATGCCCACCAC
CCAATCGCCTATTGCCGAtggggattaacaaataacaagtttgtaacttg
ctgcgcgagtgacgtcaaacgctccatcgttttgctactaatttgttctt
ctttgttccagacaCTCGCGtatgttccactacggatttttttcatattt
cgatattTCGACGGTTTGTATTGTAATTTTGATAACGNcactacggattt
ttttcatatttcgatattTCGACGGTTTGTATTGTAATTTTGATAACGTC
ACAATTGCCTTTTTTTcagaatcaatttttttgagttatACAATGATACC
ATATTAGAATTTGTATGATAAATTTTCACAGGTTCTAATACACGGGTTTC
ATGTCTCAGCTGAGCATGCGCATTACGGTCTTCGCGCCGATTCCTATTTT
GATGGTAGGAAAAGATAGGAAACTTGGCACGGACCTCAGTCGCAGGAAGC
AGTTTATGTTTTCAGTCGACTTTCTTTCCtacaactttttgatttttgaa
tcttttgCAATCTTTGCACATCTGTATTTGTTGGGTAATGGCTTCGAATA
ACAACAGTCGTCCATCTTCCAAACGTTCGAGATCGAGAACTTGTGCTGTT
GTTGGTTGCAAGAGCAGTGATTATAGATTTTCAAAATGGGAAGATGAGTG
GTGtg Run BLAST on NCBI transcript from alignment at scaffold_484:26060..27781- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068432 ID=TCONS_00068432|Name=TCONS_00068432|organism=Clytia hemisphaerica|type=transcript|length=1722bp|location=Sequence derived from alignment at scaffold_484:26060..27781- (Clytia hemisphaerica)
CGCGCGCATGTGTGAACCTCAAAAGCGGACCTTATTTTCGGCTCTCGGGG
GTATTGGCCCTACCGCGTCGCCGAATTTCGACTTGAACTAACTTCAAAAT
TATCAATATTTAAAAACATTTGGTAAGGCTACTTTGTAGCCTTTATATGC
CCATTTTGTAAAAATCTTAANAAAACATTTGGTAAGGCTACTTTGTAGCC
TTTATATGCCCATTTTGTAAAAATCTTAATTTTTGTGAGTTTCCCAGGGA
TTTTAGCCTGGAAATCGGAAATCTGGTCATAACTTTTCAATGGAGTATGT
TCCTGCTCTGATTTTTTCACATATTGTTCATGAAATGATATTCTTTATGT
TATGTCTATATAAAAATTTTTGACATTCTGAAAACTTCATTTTTTGCCAT
TTTTCAGATTTTTTGGGACAAGCTTTTTGCTTATTGCTAGTGCTGCAAAT
AAGGAAATTTCAGTTGGCCGGTATTTTTTTGAGCGCAACGAAGATAAATT
GAGCAGGGGCACCCGAAATGAAAGATTGAGCTTCAGAATGCCCGGTAGAA
ACTACTTAATGATCGGTAATTACCGATTGACAGTGTAGACCTAAAGCTCT
AAAACAGCATCTAATAACATGAAAACCAGAATATGATTCTTCAATGGGAA
TCAAAACTATAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTTGGCTTAAGTGCTTGAGTGCAGCATAGGGTACAAAGTCCAAACAT
GCGTTTCCCGTAATTTTTGTATGAAGAGTTAGGTCTATACTGATTGAAGA
ATTAGAATGCCCACCACCCAATCGCCTATTGCCGATGGGGATTAACAAAT
AACAAGTTTGTAACTTGCTGCGCGAGTGACGTCAAACGCTCCATCGTTTT
GCTACTAATTTGTTCTTCTTTGTTCCAGACACTCGCGTATGTTCCACTAC
GGATTTTTTTCATATTTCGATATTTCGACGGTTTGTATTGTAATTTTGAT
AACGNCACTACGGATTTTTTTCATATTTCGATATTTCGACGGTTTGTATT
GTAATTTTGATAACGTCACAATTGCCTTTTTTTCAGAATCAATTTTTTTG
AGTTATACAATGATACCATATTAGAATTTGTATGATAAATTTTCACAGGT
TCTAATACACGGGTTTCATGTCTCAGCTGAGCATGCGCATTACGGTCTTC
GCGCCGATTCCTATTTTGATGGTAGGAAAAGATAGGAAACTTGGCACGGA
CCTCAGTCGCAGGAAGCAGTTTATGTTTTCAGTCGACTTTCTTTCCTACA
ACTTTTTGATTTTTGAATCTTTTGCAATCTTTGCACATCTGTATTTGTTG
GGTAATGGCTTCGAATAACAACAGTCGTCCATCTTCCAAACGTTCGAGAT
CGAGAACTTGTGCTGTTGTTGGTTGCAAGAGCAGTGATTATAGATTTTCA
AAATGGGAAGATGAGTGGTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068432-exon-scaffold_484-1575043694:27200..27781 | TCONS_00068432-exon-scaffold_484-1575043694:27200..27781 | Clytia hemisphaerica | exon |
| TCONS_00068432-exon-scaffold_484-1575043694:26060..26732 | TCONS_00068432-exon-scaffold_484-1575043694:26060..26732 | Clytia hemisphaerica | exon |
| TCONS_00068432-exon-scaffold_484-1510915933:27200..27781 | TCONS_00068432-exon-scaffold_484-1510915933:27200..27781 | Clytia hemisphaerica | exon |
| TCONS_00068432-exon-scaffold_484-1510915933:26060..26732 | TCONS_00068432-exon-scaffold_484-1510915933:26060..26732 | Clytia hemisphaerica | exon |
| TCONS_00068432-exon-scaffold_484-1491911889:27200..27781 | TCONS_00068432-exon-scaffold_484-1491911889:27200..27781 | Clytia hemisphaerica | exon |
| TCONS_00068432-exon-scaffold_484-1491911889:26060..26732 | TCONS_00068432-exon-scaffold_484-1491911889:26060..26732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_484 | supercontig | scaffold_484:26060..27781 - |
Blast
The following BLAST results are available for this feature:
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