TCONS_00006754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006754
Unique NameTCONS_00006754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006754 ID=TCONS_00006754|Name=TCONS_00006754|organism=Clytia hemisphaerica|type=transcript|length=666bp
CAGCCAGAACAGGAACAAAAGTTGGAAACTGCTACAGCACAAGATATCAA
GAACAGTGTTCGTACAGTGACCATGGAGAACAGTTCAAAAGATTTAATCG
AAACATTAAGAGGGAAACATGAGCAACTACAGTCTGAATTGAATCGTGAG
CGCAAAAAgAATTGTGATCTTCATGAAGCTAATCGCATTGCTGAAACCGA
GGCATCACAAGCCAGGAAGATTATTGAAGAAAAACAAGATGAGATAGTGA
GCTTGcgtaaagaaaatgaagattgtaGGAAtagGATCAGTTCTATGATG
ATGTCTCAAGAGGTTGGCACAACATCTTCACAAAATTTGTTGGACATTAA
CCGCCCAAGTATCGTCAAAGATAAATTCAGATTACTCTACGTCAACGAGT
ACAATGATGTTTTGAGCGCATGGGATCAATTGTCTGAAAAAGAATGTTCT
GATTATCTCCTGGAGATTTTGTTTGATGCAAACGATTTATGCAACCAATA
TGCTAATAAATTCACCGGAGATGTCACAAACTCGCTTGAGTGTATTTTCA
AgaagATGCCATTTTCTGCTAATAATACCTACAAAGGGAACAAACACATT
TTGGAATTTATTCACGAAAATTTGAAGAACATGCCTCATGAAAGTATTCA
AGAAGAATTCTGCAAC
Run BLAST on NCBI

transcript from alignment at sc0000070:338412..340244+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006754 ID=TCONS_00006754|Name=TCONS_00006754|organism=Clytia hemisphaerica|type=transcript|length=1833bp|location=Sequence derived from alignment at sc0000070:338412..340244+ (Clytia hemisphaerica)
CAGCCAGAACAGGAACAAAAGTTGGAAACTGCTACAGCACAAGATATCAA
GAACAGTGTTCGTACAGTGACCATGGAGAACAGTTCAAAAGATTTAATCG
AAACATTAAGAGGGAAACATGAGCAACTACAGTCTGAATTGAATCGTGAG
CGCAAAAAGTTAGTAGATAACATCTATAAAAAATCCCAAATAAATCAATA
ATTTGCTGTGTGTATATCTTTTTTGGAAGTGATCTCTGATTTAGGTTAGG
GCTTATTCCCACTAGGAAAGGAGTGTTTCTTGTCTTGTCTTATATCTTTT
AAGAGAACTGTTTTTTGAAAAGGTTCAAATCTTCCTGATTTTGACATATA
TATTTAAGTTACTGAATAAAACATAAAATGccaaagattttttgaagcaa
aaatttaagaaataaaactattttttattgttttcaggAATTGTGATCTT
CATGAAGCTAATCGCATTGCTGAAACCGAGTAAGAGGGGTGACCTCAACC
TCCATAAAAAAAGAGAATGTTTATActtaaaacctaaaaaatatGTATTA
CATGTCTTTTTGATCAAAAATCGTGAtgctaatttttatttattgaatat
ttttgtttaacactcaaaacaaaaattccattttcaaataagaaaaagaa
ttttgagTTTGTACATGACAGAAGTTTAAATCACACGAGATTCAAATTAG
AATTATCCTGAACAAGTTTGGTACCAATAATCATCGATCTCAACAACTTT
TTATAGGGCATCACAAGCCAGGAAGATTATTGAAGAAAAACAAGATGAGA
TAGTGAGCTTGcgtaaagaaaatgaagattgtaGGAAtaggtaaaaataa
aaacttcttcattttcatgcATTGACTGATTACTCTATTAGACGATTTCT
TCAGTTGTCGTCTAGaacttacattttatttttaaccattttttagGATC
AGTTCTATGATGATGTCTCAAGAGGTTGGCACAACATCTTCACAAAATTT
GTTGGACATTAACCGCCCAAGTATCGTCAAAGATAAATTCAGATTACTCT
ACGTCAACGAGTACAATGATGTTTTGAGCGCATGGGATCAATTGTCTGAA
AAAGAATGTTCTGATTATCTCCTGGAGATTTTGTTTGTAAGGATCGGGTT
CTAATTTTTTGTAGCTTTGAAAAGTGAATACTACTAAGTACAAATAATAA
TACCATTTTATGTGGCatatatttttgagtttttaggtATTCAATGACAA
TTGTTGAATTAGATTTGTTTAATGTTTCATTTTAGGATGCAAACGATTTA
TGCAACCAATATGCTAATAAATTCACCGGAGATGTCACAAACTCGCTTGA
GTGTATTTTCAAgaaggttgaaatttctttgtatttataAGTTTGATTAT
TTGACCCATCTTTGTTCGGTGAAAGTGATATTATGTGCAACTAAATTgct
tattattttatttaccTGACAAAACCTTTTCAAGATTTACTACAATTGTT
GCTGCCGATGTAGGAATACATCTATGATAGACCGACTGCTGTTGAAGGCT
GTCCAGGCTGTCGTATCTTGTATACATCCTTTAGCTCATTGGCAAACACA
GCTATTTTAACATCTTAACAAGtggactttttttaaaagaacaaactagA
TTGCGCCTTCCAAAAAACAGCAGacagaacaacagcaacaaaatttaatt
tggcaattCAATTTGCTTTTAGATGCCATTTTCTGCTAATAATACCTACA
AAGGGAACAAACACATTTTGGAATTTATTCACGAAAATTTGAAGAACATG
CCTCATGAAAGTATTCAAGAAGAATTCTGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003776XLOC_003776Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006754-exon-sc0000070-1491911889:338412..338569TCONS_00006754-exon-sc0000070-1491911889:338412..338569Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1510915933:338412..338569TCONS_00006754-exon-sc0000070-1510915933:338412..338569Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1575043694:338412..338569TCONS_00006754-exon-sc0000070-1575043694:338412..338569Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1491911889:338849..338890TCONS_00006754-exon-sc0000070-1491911889:338849..338890Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1510915933:338849..338890TCONS_00006754-exon-sc0000070-1510915933:338849..338890Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1575043694:338849..338890TCONS_00006754-exon-sc0000070-1575043694:338849..338890Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1491911889:339168..339251TCONS_00006754-exon-sc0000070-1491911889:339168..339251Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1510915933:339168..339251TCONS_00006754-exon-sc0000070-1510915933:339168..339251Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1575043694:339168..339251TCONS_00006754-exon-sc0000070-1575043694:339168..339251Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1491911889:339358..339547TCONS_00006754-exon-sc0000070-1491911889:339358..339547Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1510915933:339358..339547TCONS_00006754-exon-sc0000070-1510915933:339358..339547Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1575043694:339358..339547TCONS_00006754-exon-sc0000070-1575043694:339358..339547Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1491911889:339697..339777TCONS_00006754-exon-sc0000070-1491911889:339697..339777Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1510915933:339697..339777TCONS_00006754-exon-sc0000070-1510915933:339697..339777Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1575043694:339697..339777TCONS_00006754-exon-sc0000070-1575043694:339697..339777Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1491911889:340134..340244TCONS_00006754-exon-sc0000070-1491911889:340134..340244Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1510915933:340134..340244TCONS_00006754-exon-sc0000070-1510915933:340134..340244Clytia hemisphaericaexon
TCONS_00006754-exon-sc0000070-1575043694:340134..340244TCONS_00006754-exon-sc0000070-1575043694:340134..340244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:338412..340244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.64764	0.736149	2.54567	4.13982	0.372299	1.75574	0	0.740725	1.56337	1.48224	0	0	0	0	0	0	0	0	0	0	3.69855	5.91836	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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