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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068109 ID=TCONS_00068109|Name=TCONS_00068109|organism=Clytia hemisphaerica|type=transcript|length=710bp
aaaaaagatagcaTATTCAtagtttatattttcttttttgcataTTATAA
ATCTCTATTATAAATCAAAATCCTGCAAAATTTACTAAAAATGAACACTC
AAATCTCTCTGTTGATTGACAAAAGAATAATGGACAAAATGTATATATGA
ATGAATTTGGtgttgaaatgaaaatgttggTAATTCGTTGATTGTTTATT
GTTGTTTTACTATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATG
GCTTTGCATCGTTTGAGCTTGGTATTACCATCGCCTTCCTGTTTTTGTTG
TTGGTTCGTTTCTTCACACCTGAATACTGCACTGAAAGAGTTCATAAAAG
TGATAGATATGCTATGCCGGGATCAATCAATAACCAAATAAAGACCCTGT
caacgcaccggacttaacgaacacggGACATGCGAAAGTCcagtgtaaaa
tgagaatttttttaccatcggacaatctctacaccggacttaaggaagtc
ggatgtctggtgtcggagaaggatatttttttccaccggacaatcaaaac
accggaaaCACTAATTCAATGTCTTGTTATTGGAATTATTGCTGTTGGAA
TAACATTGGTATTGGACAATAATTAAAGACTTTATTTCAACTAAAGAGTA
TTACATATTTCAAATGTATTGCAAagaagtactctcgggtacctaatagc
cggggggggg Run BLAST on NCBI transcript from alignment at scaffold_48:118799..119913+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068109 ID=TCONS_00068109|Name=TCONS_00068109|organism=Clytia hemisphaerica|type=transcript|length=1115bp|location=Sequence derived from alignment at scaffold_48:118799..119913+ (Clytia hemisphaerica)
aaaaaagatagcaTATTCAtagtttatattttcttttttgcataTTATAA
ATCTCTATTATAAATCAAAATCCTGCAAAATTTACTAAAAATGAACACTC
AAATCTCTCTGTTGATTGACAAAAGAATAATGGACAAAATGTATATATGA
ATGAATTTGGtgttgaaatgaaaatgttggTAATTCGTTGATTGTTTATT
GTTGTTTTACTATCTGGTGTTACATGTTTATAGTATCGAAGAAGTCCATG
GCTTTGCATCGTTTGAGCTTGGTATTACCATCGCCTTCCTGTTTTTGTTG
TTGGTTCGTTTCTTCACACCTGAATACTGCACTGAAAGAGTTCATAAAAG
TGATAGGTAAGCTAAAGGTCTCTTTTTGATCCATCAAAATTTGCTAACGC
AGACACTTTAACGTGTGTTTCTAGGTATATCTTAGAAAGCAATCATTTTA
TAGTCCTTCCATTTTCATTTGAATAATGTCTTTTTATTCGTCCAGCCATC
TCTCAAAGAACGTTAAAAATCTATGATAGTCTTTTGTCTCAATGAAAGAA
TAAAAGGGATTTGTTAGCGCTAGTTTGCAAGCGTTCTGTTTCATTACTTT
AACAtacaaaatatttgataaaaagtaTACTGGTATAGGACTATACCTTA
AGCAATTAATCATGAATGATCTAAGTTTTAAAGAGTGAAGTGATTTTGTT
catgttgttattattatttacCTGTGTATGGGACTTAAATATCTTCATTG
TTTTGTTGTAGATATGCTATGCCGGGATCAATCAATAACCAAATAAAGAC
CCTGTcaacgcaccggacttaacgaacacggGACATGCGAAAGTCcagtg
taaaatgagaatttttttaccatcggacaatctctacaccggacttaagg
aagtcggatgtctggtgtcggagaaggatatttttttccaccggacaatc
aaaacaccggaaaCACTAATTCAATGTCTTGTTATTGGAATTATTGCTGT
TGGAATAACATTGGTATTGGACAATAATTAAAGACTTTATTTCAACTAAA
GAGTATTACATATTTCAAATGTATTGCAAagaagtactctcgggtaccta
atagccggggggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068109-exon-scaffold_48-1491911889:118799..119154 | TCONS_00068109-exon-scaffold_48-1491911889:118799..119154 | Clytia hemisphaerica | exon |
| TCONS_00068109-exon-scaffold_48-1510915933:118799..119154 | TCONS_00068109-exon-scaffold_48-1510915933:118799..119154 | Clytia hemisphaerica | exon |
| TCONS_00068109-exon-scaffold_48-1575043694:118799..119154 | TCONS_00068109-exon-scaffold_48-1575043694:118799..119154 | Clytia hemisphaerica | exon |
| TCONS_00068109-exon-scaffold_48-1491911889:119560..119913 | TCONS_00068109-exon-scaffold_48-1491911889:119560..119913 | Clytia hemisphaerica | exon |
| TCONS_00068109-exon-scaffold_48-1510915933:119560..119913 | TCONS_00068109-exon-scaffold_48-1510915933:119560..119913 | Clytia hemisphaerica | exon |
| TCONS_00068109-exon-scaffold_48-1575043694:119560..119913 | TCONS_00068109-exon-scaffold_48-1575043694:119560..119913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:118799..119913 + |
Blast
The following BLAST results are available for this feature:
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