TCONS_00068069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068069
Unique NameTCONS_00068069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068069 ID=TCONS_00068069|Name=TCONS_00068069|organism=Clytia hemisphaerica|type=transcript|length=421bp
ttgctctctacagaatgcaattaacgattaattgctctctttgaagggac
gccaaataagaaaaaataactcatcgtgcgattacaATAATAATTTCATA
TAAAAAACAACGCGATATCTCCGTAGGTATCTtcgtgaaaaaaataaatt
taaaactttcgcagaataattttttaaatataggCAGGGTAGAAAATCCT
TTAGAATTTAGGTAGTGTTTTTAGAAAGGAAATACCTACCTTAAGGCAAG
AAACTtacttaagggaactaattttcgcaagAACTGATTTTTGCGGTGCG
AGGGTATAAAGCTGGCGTATTTTGCGGTTGACACCCAGTTTTTGttcaaa
ttctttcattttcctaggggtttttaTTGATTTGCAACTAAAATTGTACT
TCGCAGACACTTAACTTATTA
Run BLAST on NCBI

transcript from alignment at scaffold_478:430851..431271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068069 ID=TCONS_00068069|Name=TCONS_00068069|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at scaffold_478:430851..431271 (Clytia hemisphaerica)
TAATAAGTTAAGTGTCTGCGAAGTACAATTTTAGTTGCAAATCAAtaaaa
acccctaggaaaatgaaagaatttgaaCAAAAACTGGGTGTCAACCGCAA
AATACGCCAGCTTTATACCCTCGCACCGCAAAAATCAGTTcttgcgaaaa
ttagttcccttaagtaAGTTTCTTGCCTTAAGGTAGGTATTTCCTTTCTA
AAAACACTACCTAAATTCTAAAGGATTTTCTACCCTGcctatatttaaaa
aattattctgcgaaagttttaaatttatttttttcacgaAGATACCTACG
GAGATATCGCGTTGTTTTTTATATGAAATTATTATtgtaatcgcacgatg
agttattttttcttatttggcgtcccttcaaagagagcaattaatcgtta
attgcattctgtagagagcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042496XLOC_042496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068069-exon-scaffold_478-1491911889:430851..431271TCONS_00068069-exon-scaffold_478-1491911889:430851..431271Clytia hemisphaericaexon
TCONS_00068069-exon-scaffold_478-1510915933:430851..431271TCONS_00068069-exon-scaffold_478-1510915933:430851..431271Clytia hemisphaericaexon
TCONS_00068069-exon-scaffold_478-1575043694:430851..431271TCONS_00068069-exon-scaffold_478-1575043694:430851..431271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:430851..431271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334696	0	1.0251	0	0.230074	0.182829	0.765237	0	0.148573	0.560266	0	0.117259	2.28879	1.96493	1.61544	0.496057	0.628137	0.731156	7.47157	4.80164	3.55963	2.55852	0.959389	1.57601	0.539022	1.28284	1.83915	0.244893	0.371486	0.189243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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