|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068000 ID=TCONS_00068000|Name=TCONS_00068000|organism=Clytia hemisphaerica|type=transcript|length=583bp
CAACATCAATGTTTTAGTAGGACTTTAGcatcaacattttcattatAGTT
TGTGCGCAACGGATTTTCAAACAACAATATAAAACATGAACCACGAACAC
tctttcaatttcgattttCTCTAATCAACATCAATGTTTTAGTAATAGTA
GAGCTTTTACTCCAACTATTCCATTGCGCTTTGTTGTTGTCTGTGTGATC
ATTATTAAAAGAGATCTGTGCACATTTCTTAAACCACCAACCACCTTCTT
TTAATTGAGCACATTTTCCGGAATATAAATCGTTATCGCGATCAGGAGTC
GAGAATTCCATACCATCATGGACTAACCAATCGGCTAAAACAAAAAGAAG
TCAAAATACAGTTGActgtctctaattcgaactgaaacggggaaatttat
tttattcaaattaaagAGAGATACGAATTGTAGAAAGTAGATTTTAAGTA
GATTTTTCTTTGACGGGGATAgggaataagttcgaattatagagtgatTC
GAATGATAAAAGTTCAAATAAGCGAGAATTCTCTGTACCTCTTGATACTA
GGTTAGAGCTTACCATGAAGTATCCCAGCTAGC Run BLAST on NCBI transcript from alignment at scaffold_478:289489..291287+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068000 ID=TCONS_00068000|Name=TCONS_00068000|organism=Clytia hemisphaerica|type=transcript|length=1799bp|location=Sequence derived from alignment at scaffold_478:289489..291287+ (Clytia hemisphaerica)
CAACATCAATGTTTTAGTAGGACTTTAGcatcaacattttcattatAGTT
TGTGCGCAACGGATTTTCAAACAACAATATAAAACATGAATCACGAACAC
TCTTTCAATTTCGATTCTCTCTAATCAACATCAATGTTTTAGTAGGACTT
TAGCCTCAACGTTTTCATTATAGTTTGTGTGCAACGGATTttcaaacaac
aaaataaaacacgAAGCGCGAACACTCTTTCAATTTCGATTCTCTCTAAT
CAACATCAATGTTTTAGTAGGACTTTAGCATCAACGTTTTCATTATAGTT
TGTGTGCAACGGATTTTCAAACAACAATATAAAACATNtctcaatttttg
ttttgctgtACCTTCGAGCGAACGGGTTGAAAACCCTCACGTCAAAAAAT
GCTCTTTGGCCAGCAGTCCAAAAACtgagaacaaaaacattgcgtgcgaa
aacgaaagtataacaGACAGACaaacaaaacgacatacagaataccgcta
ttaatatatagatattaAATATGATTATAATTAATTCCCAGGAAATTACT
ACGCGTAGAAagccaaaaaacaacaaagtcaaATGACATTATGTAAAACT
ATAGTTGTTTTACGACATTTACAACGATATGTTGCCAAAACAAACCAAGT
ATCTTTACAAATATTAGCACCACGAGTGGTGTTCTGTACATTCCTATGTG
AAGAAAATTGATATCAACAAAATATTGATCCTTTTAGTAAAATGttacat
aaaaaatataaagtcaagataaaaaaagtgcaaagaaaaaaaactgttta
aatCGATATCGATTCTCTCTgataaaattcaatattttagtAGGGTTTAT
AACCCAAGTGTCCTATTCCGGTTAGTACGCAACGGTGTCAGGATTCAAAA
CTGATTttcaaacaacaaaataaaacatgaaGCACGAACACTCTTTCAAT
TTCGATTCTCTCTAGTCAACATCAATGTTTTAGTAGGACTTTAGcatcaa
cattttcattatAGTTTGTGTGCAACGGATTTTCAAACAACAAAATGAAA
CACGAATCACGAACACTCTTTCAATTTCGATTCTCTCTAGTCAACATCAA
TGTTTTAGTAGGACTTTAGcatcaacattttcattatAGTTTGTGCGCAA
CGGATTTTCAAACAACAATATAAAACATGAATCACGAACACTCTTTCAAT
TTCGATTCTCTCTAATCAACATCAATGTTTTAGTAGGACTTTAGCATCAA
CGTTTTCATTATAGTTTGTGTGCAACGGATTTTCAAACAACAATATAAAA
CATGAACCACGAACACtctttcaatttcgattttCTCTAATCAACATCAA
TGTTTTAGTAATAGTAGAGCTTTTACTCCAACTATTCCATTGCGCTTTGT
TGTTGTCTGTGTGATCATTATTAAAAGAGATCTGTGCACATTTCTTAAAC
CACCAACCACCTTCTTTTAATTGAGCACATTTTCCGGAATATAAATCGTT
ATCGCGATCAGGAGTCGAGAATTCCATACCATCATGGACTAACCAATCGG
CTAAAACAAAAAGAAGTCAAAATACAGTTGActgtctctaattcgaactg
aaacggggaaatttattttattcaaattaaagAGAGATACGAATTGTAGA
AAGTAGATTTTAAGTAGATTTTTCTTTGACGGGGATAgggaataagttcg
aattatagagtgatTCGAATGATAAAAGTTCAAATAAGCGAGAATTCTCT
GTACCTCTTGATACTAGGTTAGAGCTTACCATGAAGTATCCCAGCTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068000-exon-scaffold_478-1491911889:289489..289573 | TCONS_00068000-exon-scaffold_478-1491911889:289489..289573 | Clytia hemisphaerica | exon |
| TCONS_00068000-exon-scaffold_478-1510915933:289489..289573 | TCONS_00068000-exon-scaffold_478-1510915933:289489..289573 | Clytia hemisphaerica | exon |
| TCONS_00068000-exon-scaffold_478-1575043694:289489..289573 | TCONS_00068000-exon-scaffold_478-1575043694:289489..289573 | Clytia hemisphaerica | exon |
| TCONS_00068000-exon-scaffold_478-1491911889:290790..291287 | TCONS_00068000-exon-scaffold_478-1491911889:290790..291287 | Clytia hemisphaerica | exon |
| TCONS_00068000-exon-scaffold_478-1510915933:290790..291287 | TCONS_00068000-exon-scaffold_478-1510915933:290790..291287 | Clytia hemisphaerica | exon |
| TCONS_00068000-exon-scaffold_478-1575043694:290790..291287 | TCONS_00068000-exon-scaffold_478-1575043694:290790..291287 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:289489..291287 + |
Blast
The following BLAST results are available for this feature:
|
