TCONS_00067987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067987
Unique NameTCONS_00067987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067987 ID=TCONS_00067987|Name=TCONS_00067987|organism=Clytia hemisphaerica|type=transcript|length=772bp
TAACCTTTGTAATTCCCCTCTTAACAACTatgattttatttaaaataaat
gtttttaatcaaaacaagtttttgtattattatttttgttctAGTAGTAT
GATCAATTAAcaagatttttcataaaaaggaTGCTTATAAAGGTTTTGTC
TGCTATATGTTTTATGGCATTGGCTGGTGAAGTAAGAAACAAGATGGCTG
TGTCAAGTTctacaaatgataaaaaatttgctttgctgcaagaatttttt
aatttagatGAGAGATTTCGTGAAACTCTTCATGCtggccttcaaaaatt
tttatggAATGGAAGTGTCACAAGGAAACACCCAAATGCAAAGAAAAATA
TCCAGCTTGCTGGCAGTGCTATAGAGGGTGCATCTTTGGCAAGagttttt
caaaagaatgaTGAGTTTCCAAGTGGTTTGAACCAAGAGATAGAAGTGGA
CATTGAGTTCATGTATCTCAAGGTATACTAACACAtctttttcaataaac
tttacTTCACTTCATTTCAAGGAGAAATGACCATGTGGTTAAAAGTGTAA
GCATTACACACCATAGGCTTACAGTTTGAATCCCTGCTCCTTCCAATGTG
TTGTTCAGTTCATATATAGCCCATTCAGCTGGCCATTGACCTTGTGAAAA
CAATCACAAGAcagtctaaaagtcctagattccTGGGCTCTCTACGTAAA
ATATTGACTATATTGATGCAAATCTTcttatttttacctttttactattt
ttttcaatttagaaaAGATTCC
Run BLAST on NCBI

transcript from alignment at scaffold_478:239293..240064+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067987 ID=TCONS_00067987|Name=TCONS_00067987|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at scaffold_478:239293..240064+ (Clytia hemisphaerica)
TAACCTTTGTAATTCCCCTCTTAACAACTatgattttatttaaaataaat
gtttttaatcaaaacaagtttttgtattattatttttgttctAGTAGTAT
GATCAATTAAcaagatttttcataaaaaggaTGCTTATAAAGGTTTTGTC
TGCTATATGTTTTATGGCATTGGCTGGTGAAGTAAGAAACAAGATGGCTG
TGTCAAGTTctacaaatgataaaaaatttgctttgctgcaagaatttttt
aatttagatGAGAGATTTCGTGAAACTCTTCATGCtggccttcaaaaatt
tttatggAATGGAAGTGTCACAAGGAAACACCCAAATGCAAAGAAAAATA
TCCAGCTTGCTGGCAGTGCTATAGAGGGTGCATCTTTGGCAAGagttttt
caaaagaatgaTGAGTTTCCAAGTGGTTTGAACCAAGAGATAGAAGTGGA
CATTGAGTTCATGTATCTCAAGGTATACTAACACAtctttttcaataaac
tttacTTCACTTCATTTCAAGGAGAAATGACCATGTGGTTAAAAGTGTAA
GCATTACACACCATAGGCTTACAGTTTGAATCCCTGCTCCTTCCAATGTG
TTGTTCAGTTCATATATAGCCCATTCAGCTGGCCATTGACCTTGTGAAAA
CAATCACAAGAcagtctaaaagtcctagattccTGGGCTCTCTACGTAAA
ATATTGACTATATTGATGCAAATCTTcttatttttacctttttactattt
ttttcaatttagaaaAGATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042457XLOC_042457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067987-exon-scaffold_478-1491911889:239293..240064TCONS_00067987-exon-scaffold_478-1491911889:239293..240064Clytia hemisphaericaexon
TCONS_00067987-exon-scaffold_478-1510915933:239293..240064TCONS_00067987-exon-scaffold_478-1510915933:239293..240064Clytia hemisphaericaexon
TCONS_00067987-exon-scaffold_478-1575043694:239293..240064TCONS_00067987-exon-scaffold_478-1575043694:239293..240064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:239293..240064 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06132	1.24887	1.98746	1.57683	1.02648	1.03116	1.29992	1.26949	1.05088	0.593772	0.514104	0.941057	1.32366	2.66055	0.663585	0.65102	0.912809	1.29694	0.130696	1.31949	0.376694	0	0.758861	0.403303	2.46797	1.99813	0.648737	0.213546	0.437499	0.173343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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