TCONS_00067861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067861
Unique NameTCONS_00067861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067861 ID=TCONS_00067861|Name=TCONS_00067861|organism=Clytia hemisphaerica|type=transcript|length=314bp
aatTGATCATGTATTGAAAGAATTTAACAATAGCAATTTGAAGTTGGTTT
TAGAGAATTCTCAGACTCAAAGCATTGTTTATCACACTCAAGGAATGTTA
CGTCTTGACAGTGATTATTTTCAGTTACGAATTACAAAAGAAAGCCAAAA
TGGAACGAACCCGACTATATATGGAAATGGATTACCCTTCATTCAACCCG
AAGGTGCTTTCAGTCTATCTATTGATCAGGTCAACCTACAGAGTCTCGTA
ATTGTTAACTCTATGAACCAAAACTCAAGTATGGCCTTATCTTTTCGAAA
CTTGAATATTAAAA
Run BLAST on NCBI

protein sequence of TCONS_00067861-protein

>TCONS_00067861-protein ID=TCONS_00067861-protein|Name=TCONS_00067861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
IDHVLKEFNNSNLKLVLENSQTQSIVYHTQGMLRLDSDYFQLRITKESQN
GTNPTIYGNGLPFIQPEGAFSLSIDQVNLQSLVIVNSMNQNSSMALSFRN
LNIK
Run BLAST on NCBI

transcript from alignment at scaffold_476:406113..406426

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067861 ID=TCONS_00067861|Name=TCONS_00067861|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at scaffold_476:406113..406426 (Clytia hemisphaerica)
TTTTAATATTCAAGTTTCGAAAAGATAAGGCCATACTTGAGTTTTGGTTC
ATAGAGTTAACAATTACGAGACTCTGTAGGTTGACCTGATCAATAGATAG
ACTGAAAGCACCTTCGGGTTGAATGAAGGGTAATCCATTTCCATATATAG
TCGGGTTCGTTCCATTTTGGCTTTCTTTTGTAATTCGTAACTGAAAATAA
TCACTGTCAAGACGTAACATTCCTTGAGTGTGATAAACAATGCTTTGAGT
CTGAGAATTCTCTAAAACCAACTTCAAATTGCTATTGTTAAATTCTTTCA
ATACATGATCAatt

Coding sequence (CDS) from alignment at scaffold_476:406113..406426

>TCONS_00067861 ID=TCONS_00067861|Name=TCONS_00067861|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_476:406113..406426 (Clytia hemisphaerica)
TTTAATATTCAAGTTTCGAAAAGATAAGGCCATACTTGAGTTTTGGTTCA
TAGAGTTAACAATTACGAGACTCTGTAGGTTGACCTGATCAATAGATAGA
CTGAAAGCACCTTCGGGTTGAATGAAGGGTAATCCATTTCCATATATAGT
CGGGTTCGTTCCATTTTGGCTTTCTTTTGTAATTCGTAACTGAAAATAAT
CACTGTCAAGACGTAACATTCCTTGAGTGTGATAAACAATGCTTTGAGTC
TGAGAATTCTCTAAAACCAACTTCAAATTGCTATTGTTAAATTCTTTCAA
TACATGATCAat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042386XLOC_042386Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067861-proteinTCONS_00067861-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067861-exon-scaffold_476-1491911889:406113..406426TCONS_00067861-exon-scaffold_476-1491911889:406113..406426Clytia hemisphaericaexon
TCONS_00067861-exon-scaffold_476-1510915933:406113..406426TCONS_00067861-exon-scaffold_476-1510915933:406113..406426Clytia hemisphaericaexon
TCONS_00067861-exon-scaffold_476-1575043694:406113..406426TCONS_00067861-exon-scaffold_476-1575043694:406113..406426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:406113..406426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.224969	1.79725	0.466615	0.191811	0.823369	0	0	0.359083	1.50302	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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