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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067817 ID=TCONS_00067817|Name=TCONS_00067817|organism=Clytia hemisphaerica|type=transcript|length=3346bp
GGAGATTTGCAAACACTGCTTGATTTATTCTTAAAAGATTTAGGACCGCA
TTGGGGTCCTTATTTCAAACATGTTTTAAGTTATTGGAACAAGAAATCAG
AGCTACCAAATTTGTTGATTACAAGGTATGAAGAGATGCAAGCAGATTTA
CCAAAAGTTATTAAAAGAATTGCCAGCTTCCTAGAAGTTACAATATCAGA
TGAAGATGTACTGAAATTGTGTGACCatgtatcttttgaaaaaatgaagg
ctAATCCTATGGTTAACAAGGACGAATCTTTTGAGGAAAGGAAAAAAGCG
ATGAACAATGGTTATGCTGGCAAATTTATTAACAAAGGTAAAAGTGGAAC
GTGGAAAGAATATCTAACCGATGAAATGGTTCAACGATTTGAACAGTGGG
AAGAGAAATGGTTGAAAGATACTGATCTTAAATTTGTTTATGAAGTTTGA
AGTGTATTCagtcaaattcttttttattacaACGTTTGTGTAGGGAGACC
AAAATCCTTTATTTTTGAATCCGTCAATCTCGTACCCCAGAGCCATTcac
cattttttttattttactgaaaaACGTGGATATAGTTTAGCACTGCGCTG
TATCAATTTTAGGGCGGTGGGCGTTTTTTGAAAGACTTGGGCAGGTTATT
TTCGGTGCCCAAGAAGGGCTGTGGGCGTGAAATAGTCGaaataaaagtga
aagtgaaaaaagtCAAGACCAtttttttcgagtgatttgacCCTCGCGAT
AAACTTTAATATATTATTATTAGCAGGTTGATTTGCGCGAAATTGTTACG
AAAGtgttaaaaaattgtcaaaaaactttttttttaaatttaaacttCTT
TTAGTGTTTTTGTAACCTCTAGGGGTCcagaaaaaatattaacagcTTTC
CAACTTCATGAACCTTTTAACTttcagaaaaattcaattttttcacttaC
AGCCAGTTTTTTCACAGTCTATGCGAAGAGTCAGTGAATGCATTTTTGCA
CTTGAGTAGCAAAAATCTGCAATTTCAACctcaatatttttcattgtGGC
AACAAACTTTGCCACTGTGGCAAAAATTTTACCACATGCCCCTGAACCTT
TTTTTGAGGGGACCTCTCatacaaaatttgagctcaaaatttcaaagtga
tattcattatttattattttgagcagtggcaaaatttgatgacgtcaccg
atggtggtgacgtcatcattgatgacaaaattttgatagcAGGTGCCAAT
ACATATTATAAacacactgtgaaaattttatgaaaaattattaaatctaa
tcaaaagttatcaaaaaatttccttcaggGAAAATACTTGCGAAGGGTTA
AGCAAATTTTGTGACACACTCTCTTTATTAACACGAGACTCTTTCCCAAA
GgtattttaaggaaaaagttttttccagTTCTCACTTTTATgaataattt
cattttagtgaaaagtaaaattgcataaaaagattagaaaaacTTTTGAT
CATGTCTACCAATGGAGAGGAAAGATGGCAAGCAATCAAATATCAGccac
aaaatcagaaaaatttccatCAATGGATACACCAAAAGTTacgaaaattg
aaacaaactcACCAAAAAAGTTTCGACGTAATGAATAAGTACTTTCCAGT
GGAGAAGactatgacagaaagtatggaAAAGATGACAGATGATGATATCA
AAGTCGCAGCAAAAGAATGTGGTTTCCATCCATCAATTACTGAACTTCTG
GTAGCAATTCAAACGGATCCAATCATACACATGCTTTTTCATCACATGTA
TAAAGAACAAACAGTTCATCTACCACCCGGAAAACTGTGCATCCAGTCCT
GGCAAGAGGCATTAATTGTGATCAACGAATGTATAAATGAAGCTCCTGAA
TTTGATAATGAAAATCCAATCACTGCACCACTGTATTGTATTTTCAGTAG
CCCAATAGCAACACCAGTTGGAAATACCtgttttttgcatgaaaaagtGA
ATGCTTTGATGaaggaaattttgattgaatgGGGTAAGTACTTAACAAGC
AAATCTTCTTGTTACGTATTAACTGATGCACCTAAAGGTTGGTTCAGCAT
TAAAGCCCTAGAAGCCATGCCGAATTTCAATGAAACATATGTCTGCGATC
CATCAAAGCCTTTTTGGGGTTTCACTTCTTGGGACGATTTTTTTGTTCGC
AAGTTTAAAGATGGAGCAAGATCAGtggatgatgaagaagatgatTGCAT
AATTGTTAATCCATGCGAAGCAACCCCTTACAAAGTTAAATGGAACGTCA
AAAAGTATGATCAATTTTGGATAAAGGAACAAAATTATTCTATGGAGTTC
GTCTTGAACAAGAACCCATTGGCAGCTGCTTTTAATGGGGGAACAATTTA
TCAGGGCTTATTATGCGCTACCAATTATCATAGATTTCATAGCCCTGTTA
ATGGCATTATCCACCATCTCGATTTGGTTGAAGGAAGTTATTTTTCACAA
CCGTACATAGAAGGTGGATATCCAATCTTGAGAGACGTACTACCATACTT
AGCGCATGTCGCAACAAGAGGAATCTTTTATATCAAAGCCGACAATCCAA
ATATTGGTTTGATTGCGTTTATAGCAGTTGGAATGACTGAAGTATCAACA
GTTGAAATGACAGTAAAAGTTGGAGATCGCGTGAAAAAGGGTCACGAAAT
CGGAATGTTTCATTATGGAGGATCGAACTTCCTGTTAGTTTTTAGAGGGG
AAGTTAACATCAAATTCGATGACCAATTATTGCAAGGCTTAAATTCTGGT
AACATCAAATTGAATAAACGAATTGGCCATGTTCTTGCACCTGAAATAAA
ATAACAAGAAGGCGCCTTATGatgaaaaactttataaaatccTAGAAATA
TTCTTATCTTCATATTCATTTATCATTTATTGTTAATCTAATTTATTAAt
ttaatctttttaatttaattcttttcaggtgaagagccaaatgtaaattt
tggaaatgccagaaatatatcattattattattattgttatctCAGGAGT
AAATATTAGAGGAAATATGACGTCAAAATTAGTGAAACAACTCAATCCGA
AAGTGAACCTCGGTTGTTCGTAAAATGATATAATTTCAAAAGTATGGTCA
ATAATTTAACATATCTTACTTTATATTGATATAGAATTTGTAATTCATGA
ATATAAAagaattgtttttaaattttctcagcAATACTAGTAGTTTCATG
TTATTCACGATCATCAGTTGATTTGAAATGACTATAAAGGCCGGTCGGTC
TccacaggttttttccaaacatACCACTATAGAAATTGATTAAAGG Run BLAST on NCBI transcript from alignment at scaffold_476:301086..304994+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067817 ID=TCONS_00067817|Name=TCONS_00067817|organism=Clytia hemisphaerica|type=transcript|length=3909bp|location=Sequence derived from alignment at scaffold_476:301086..304994+ (Clytia hemisphaerica)
GGAGATTTGCAAACACTGCTTGATTTATTCTTAAAAGATTTAGGACCGCA
TTGGGGTCCTTATTTCAAACATGTTTTAAGTTATTGGAACAAGAAATCAG
AGCTACCAAATTTGTTGATTACAAGGTATGAAGAGATGCAAGCAGATTTA
CCAAAAGTTATTAAAAGAATTGCCAGCTTCCTAGAAGTTACAATATCAGA
TGAAGATGTACTGAAATTGTGTGACCatgtatcttttgaaaaaatgaagg
ctAATCCTATGGTTAACAAGGACGAATCTTTTGAGGTAGGTTAATTTTGT
TGATTCTTGTTTTAGGAGTCATAccgggcttttccagaaaaaaactctaC
AACCCCTGTTTAGGAGTTCCAGCCTTTTGTGACCTCTCATTAGAATTCCA
ACTGGAAATACTGTAACCCCCCTTAAATTTCCAGTCAAACCTCTCTGGGA
TTCCGGATTTTTACAGAATTTGAAGCACTACCTCAATGGAATTCTGCTTa
ttttttgacggatttttgtAGACCCCTATTTGGAATTCTACCTCATTTCA
AACCCTACCTCCTGTAACAGAACTGGACCTTCGCAGCAGGGAGTGTGTag
tttttttctagaaaagcccaCTTGGTCTAAACGCAAATTATGTTCTCAAA
AAAGCCGATCTTTTTCCCGTTCGGATACAAACGACCCCTGACCGCATAAT
CACGGTTGAAAAGGTTTAATTTCGAAACTAATCTCGCATANGGATACAAA
CGACCCCTGACCGCATAATCACGGTCGGAAAGGTTTAATTTCGGAGCTAT
TTTCGCATAGTGTTGTAGTCATTCCACAAATCTTCCATATACTTTTAGGA
AAGGAAAAAAGCGATGAACAATGGTTATGCTGGCAAATTTATTAACAAAG
GTAAAAGTGGAACGTGGAAAGAATATCTAACCGATGAAATGGTTCAACGA
TTTGAACAGTGGGAAGAGAAATGGTTGAAAGATACTGATCTTAAATTTGT
TTATGAAGTTTGAAGTGTATTCagtcaaattcttttttattacaACGTTT
GTGTAGGGAGACCAAAATCCTTTATTTTTGAATCCGTCAATCTCGTACCC
CAGAGCCATTcaccattttttttattttactgaaaaACGTGGATATAGTT
TAGCACTGCGCTGTATCAATTTTAGGGCGGTGGGCGTTTTTTGAAAGACT
TGGGCAGGTTATTTTCGGTGCCCAAGAAGGGCTGTGGGCGTGAAATAGTC
GaaataaaagtgaaagtgaaaaaagtCAAGACCAtttttttcgagtgatt
tgacCCTCGCGATAAACTTTAATATATTATTATTAGCAGGTTGATTTGCG
CGAAATTGTTACGAAAGtgttaaaaaattgtcaaaaaactttttttttaa
atttaaacttCTTTTAGTGTTTTTGTAACCTCTAGGGGTCcagaaaaaat
attaacagcTTTCCAACTTCATGAACCTTTTAACTttcagaaaaattcaa
ttttttcacttaCAGCCAGTTTTTTCACAGTCTATGCGAAGAGTCAGTGA
ATGCATTTTTGCACTTGAGTAGCAAAAATCTGCAATTTCAACctcaatat
ttttcattgtGGCAACAAACTTTGCCACTGTGGCAAAAATTTTACCACAT
GCCCCTGAACCTTTTTTTGAGGGGACCTCTCatacaaaatttgagctcaa
aatttcaaagtgatattcattatttattattttgagcagtggcaaaattt
gatgacgtcaccgatggtggtgacgtcatcattgatgacaaaattttgat
agcAGGTGCCAATACATATTATAAacacactgtgaaaattttatgaaaaa
ttattaaatctaatcaaaagttatcaaaaaatttccttcaggGAAAATAC
TTGCGAAGGGTTAAGCAAATTTTGTGACACACTCTCTTTATTAACACGAG
ACTCTTTCCCAAAGgtattttaaggaaaaagttttttccagTTCTCACTT
TTATgaataatttcattttagtgaaaagtaaaattgcataaaaagattag
aaaaacTTTTGATCATGTCTACCAATGGAGAGGAAAGATGGCAAGCAATC
AAATATCAGccacaaaatcagaaaaatttccatCAATGGATACACCAAAA
GTTacgaaaattgaaacaaactcACCAAAAAAGTTTCGACGTAATGAATA
AGTACTTTCCAGTGGAGAAGactatgacagaaagtatggaAAAGATGACA
GATGATGATATCAAAGTCGCAGCAAAAGAATGTGGTTTCCATCCATCAAT
TACTGAACTTCTGGTAGCAATTCAAACGGATCCAATCATACACATGCTTT
TTCATCACATGTATAAAGAACAAACAGTTCATCTACCACCCGGAAAACTG
TGCATCCAGTCCTGGCAAGAGGCATTAATTGTGATCAACGAATGTATAAA
TGAAGCTCCTGAATTTGATAATGAAAATCCAATCACTGCACCACTGTATT
GTATTTTCAGTAGCCCAATAGCAACACCAGTTGGAAATACCtgttttttg
catgaaaaagtGAATGCTTTGATGaaggaaattttgattgaatgGGGTAA
GTACTTAACAAGCAAATCTTCTTGTTACGTATTAACTGATGCACCTAAAG
GTTGGTTCAGCATTAAAGCCCTAGAAGCCATGCCGAATTTCAATGAAACA
TATGTCTGCGATCCATCAAAGCCTTTTTGGGGTTTCACTTCTTGGGACGA
TTTTTTTGTTCGCAAGTTTAAAGATGGAGCAAGATCAGtggatgatgaag
aagatgatTGCATAATTGTTAATCCATGCGAAGCAACCCCTTACAAAGTT
AAATGGAACGTCAAAAAGTATGATCAATTTTGGATAAAGGAACAAAATTA
TTCTATGGAGTTCGTCTTGAACAAGAACCCATTGGCAGCTGCTTTTAATG
GGGGAACAATTTATCAGGGCTTATTATGCGCTACCAATTATCATAGATTT
CATAGCCCTGTTAATGGCATTATCCACCATCTCGATTTGGTTGAAGGAAG
TTATTTTTCACAACCGTACATAGAAGGTGGATATCCAATCTTGAGAGACG
TACTACCATACTTAGCGCATGTCGCAACAAGAGGAATCTTTTATATCAAA
GCCGACAATCCAAATATTGGTTTGATTGCGTTTATAGCAGTTGGAATGAC
TGAAGTATCAACAGTTGAAATGACAGTAAAAGTTGGAGATCGCGTGAAAA
AGGGTCACGAAATCGGAATGTTTCATTATGGAGGATCGAACTTCCTGTTA
GTTTTTAGAGGGGAAGTTAACATCAAATTCGATGACCAATTATTGCAAGG
CTTAAATTCTGGTAACATCAAATTGAATAAACGAATTGGCCATGTTCTTG
CACCTGAAATAAAATAACAAGAAGGCGCCTTATGatgaaaaactttataa
aatccTAGAAATATTCTTATCTTCATATTCATTTATCATTTATTGTTAAT
CTAATTTATTAAtttaatctttttaatttaattcttttcaggtgaagagc
caaatgtaaattttggaaatgccagaaatatatcattattattattattg
ttatctCAGGAGTAAATATTAGAGGAAATATGACGTCAAAATTAGTGAAA
CAACTCAATCCGAAAGTGAACCTCGGTTGTTCGTAAAATGATATAATTTC
AAAAGTATGGTCAATAATTTAACATATCTTACTTTATATTGATATAGAAT
TTGTAATTCATGAATATAAAagaattgtttttaaattttctcagcAATAC
TAGTAGTTTCATGTTATTCACGATCATCAGTTGATTTGAAATGACTATAA
AGGCCGGTCGGTCTccacaggttttttccaaacatACCACTATAGAAATT
GATTAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067817-exon-scaffold_476-1491911889:301086..301370 | TCONS_00067817-exon-scaffold_476-1491911889:301086..301370 | Clytia hemisphaerica | exon |
| TCONS_00067817-exon-scaffold_476-1510915933:301086..301370 | TCONS_00067817-exon-scaffold_476-1510915933:301086..301370 | Clytia hemisphaerica | exon |
| TCONS_00067817-exon-scaffold_476-1575043694:301086..301370 | TCONS_00067817-exon-scaffold_476-1575043694:301086..301370 | Clytia hemisphaerica | exon |
| TCONS_00067817-exon-scaffold_476-1491911889:301934..304994 | TCONS_00067817-exon-scaffold_476-1491911889:301934..304994 | Clytia hemisphaerica | exon |
| TCONS_00067817-exon-scaffold_476-1510915933:301934..304994 | TCONS_00067817-exon-scaffold_476-1510915933:301934..304994 | Clytia hemisphaerica | exon |
| TCONS_00067817-exon-scaffold_476-1575043694:301934..304994 | TCONS_00067817-exon-scaffold_476-1575043694:301934..304994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:301086..304994 + |
Blast
The following BLAST results are available for this feature:
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