TCONS_00067725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067725
Unique NameTCONS_00067725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067725 ID=TCONS_00067725|Name=TCONS_00067725|organism=Clytia hemisphaerica|type=transcript|length=1056bp
CGAACCTTCTCAAACTGGAAGAAACAACCAGGGTGCAAAGATGACAGGCT
TCTTGAGAACGTTTGTTTGGAGAAGTATATCGTAGATGAGCTTCATTTGC
TACTTCGGGTAACCGATCGTTTAGAGGAGGGACTGTTTCACACGATAATT
GACCAAGATGAGGTATGGTTATCTGAAAATGCAGAAATATAATCTGTAAC
GGTAACTTTTCCAAAAGATGAAGGTGATcgtgttcaaaaataaaggcctg
ttttgtgacattttcaaagttggctgacaattatgttaataaaatgagta
tttttggtgGCTAACCGTTTATTTTTTCACNACAACTTCTTGGAAAATAA
ACTGATTGAGTTGATGAAAAGGATTGGGGTCACACTGACATTTTGGAGGg
agaagaaatcaaagaaacttGAATGGACAAGCTTAATGGGGACAGATAAG
AAGAAAATGCTAAGAAAGTTGCCACAATACTTCAGTGAATTGCTCCCTGA
GAAAGATGTCTTACCAACACAGCAACTTTGGAAGGTCTTTGAAGAACTGT
ACGACACGATCAACAAACCAAAATTGACGGAGGTAGAAATTGACACATTC
CAACAAAAGaccTACGAGTGGATTGGTAGGCTCAAGAAGATGAACGGTTG
TGGATATAGTTGGAGCTATCCTGTGACACCCTACATCCATATTTTGGCTA
AGCATGTACCTGACATTCTGCGAAAATATGGAACCTTGCGAATCTTCTCT
GGCCAAGGTGTCGAGAAGAAAAATGATGATTTGAGGaagatttttcactc
aaaaatcAATCGAAAGGACGCATGTGTGAATCTTTTGAAAGTCGAGAAGA
GAATGAGATGCCTGGAAGAGGAgggttttgaaagaaaaaaaagatcatac
ctcaAGAAGGCCGAAGCATAGCCAAATTCAACATCATCAATGtctacatt
tttgaaaaaaaaaatattaatagttttcatttaaattctaaaatttgcta
aatTGAAATAGAGAATGGTTCCAATCAGGTTACTTTAAGGGAAGAAGTTT
TCGCTA
Run BLAST on NCBI

protein sequence of TCONS_00067725-protein

>TCONS_00067725-protein ID=TCONS_00067725-protein|Name=TCONS_00067725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MKRIGVTLTFWREKKSKKLEWTSLMGTDKKKMLRKLPQYFSELLPEKDVL
PTQQLWKVFEELYDTINKPKLTEVEIDTFQQKTYEWIGRLKKMNGCGYSW
SYPVTPYIHILAKHVPDILRKYGTLRIFSGQGVEKKNDDLRKIFHSKINR
KDACVNLLKVEKRMRCLEEEGFERKKRSYLKKAEA
Run BLAST on NCBI

transcript from alignment at scaffold_473:105710..107228+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067725 ID=TCONS_00067725|Name=TCONS_00067725|organism=Clytia hemisphaerica|type=transcript|length=1519bp|location=Sequence derived from alignment at scaffold_473:105710..107228+ (Clytia hemisphaerica)
CGAACCTTCTCAAACTGGAAGAAACAACCAGGGTGCAAAGATGACAGGCT
TCTTGAGAACGTTTGTTTGGAGAAGTATATCGTAGATGAGCTTCATTTGC
TACTTCGGGTAACCGATCGTTTAGAGGAGGGACTGTTTCACACGATAATT
GACCAAGATGAGGTATGGTTATCTGAAAATGCAGAAATATAATCTGTAAC
GGTAACTTTTCCAAAAGATGAAGGTGATcgtgttcaaaaataaaggcctg
ttttgtgacattttcaaagttggctgacaattatgttaataaaatgagta
tttttggtgGCTAACCGTTTATTTTTTCACNACAACTTCTTGGAAAATAA
ACTGATTGAGTTGATGAAAAGGATTGGGGTCACACTGACATTTTGGAGGg
agaagaaatcaaagaaacttGAATGGACAAGCTTAATGGGGACAGATAAG
AAGAAAATGCTAAGAAAGTTGCCACAATACTTCAGTGAATTGCTCCCTGA
GAAAGATGTCTTACCAACACAGCAACTTTGGAAGGTATAAACATCTACCT
TAAGGGATGAAATTTCAGCGGATTATCCGCtgaaattttttgcaaaatga
gtcactgccaAAATCTTGAATCTACTACAGACCTtagatttttattaaaa
taaacCTGTCTTATAACAATTATTATATATTAAGTCTTAACAAATATCTT
TGAATAATACTGTTAGGTGACTGTACAGGACTGTAAGTTAATAAATTAGG
GCAGAGACATtgttgtaatgttttttttacctttttacaATAAGGTCTTT
GAAGAACTGTACGACACGATCAACAAACCAAAATTGACGGAGGTAGAAAT
TGACACATTCCAACAAAAGGTGAATAATCTTTAAAATTATTGACTCTCCA
TTACGTAACCATACATTTGATGATGATACAAAATTGACACAATCctgaaa
taaaatcaaaattattttttagaccTACGAGTGGATTGGTAGGCTCAAGA
AGATGAACGGTTGTGGATATAGTTGGAGCTATCCTGTGACACCCTACATC
CATATTTTGGCTAAGCATGTACCTGACATTCTGCGAAAATATGGAACCTT
GCGAATCTTCTCTGGCCAAGGTAAATTATAAATTCTTATTAAAATCACAC
TCTCCCTTTTGCAGCCTTTTGTACTTTTAGCATATTTGACTTATCATTTG
ATTGCAACTTAATTTTACAGGTGTCGAGAAGAAAAATGATGATTTGAGGa
agatttttcactcaaaaatcAATCGAAAGGACGCATGTGTGAATCTTTTG
AAAGTCGAGAAGAGAATGAGATGCCTGGAAGAGGAgggttttgaaagaaa
aaaaagatcatacctcaAGAAGGCCGAAGCATAGCCAAATTCAACATCAT
CAATGtctacatttttgaaaaaaaaaatattaatagttttcatttaaatt
ctaaaatttgctaaatTGAAATAGAGAATGGTTCCAATCAGGTTACTTTA
AGGGAAGAAGTTTTCGCTA

Coding sequence (CDS) from alignment at scaffold_473:105710..107228+

>TCONS_00067725 ID=TCONS_00067725|Name=TCONS_00067725|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_473:105710..107228+ (Clytia hemisphaerica)
ATGAAAAGGATTGGGGTCACACTGACATTTTGGAGGgagaagaaatcaaa
gaaacttGAATGGACAAGCTTAATGGGGACAGATAAGAAGAAAATGCTAA
GAAAGTTGCCACAATACTTCAGTGAATTGCTCCCTGAGAAAGATGTCTTA
CCAACACAGCAACTTTGGAAGGTCTTTGAAGAACTGTACGACACGATCAA
CAAACCAAAATTGACGGAGGTAGAAATTGACACATTCCAACAAAAGaccT
ACGAGTGGATTGGTAGGCTCAAGAAGATGAACGGTTGTGGATATAGTTGG
AGCTATCCTGTGACACCCTACATCCATATTTTGGCTAAGCATGTACCTGA
CATTCTGCGAAAATATGGAACCTTGCGAATCTTCTCTGGCCAAGGTGTCG
AGAAGAAAAATGATGATTTGAGGaagatttttcactcaaaaatcAATCGA
AAGGACGCATGTGTGAATCTTTTGAAAGTCGAGAAGAGAATGAGATGCCT
GGAAGAGGAgggttttgaaagaaaaaaaagatcatacctcaAGAAGGCCG
AAGCATAGATGAAAAGGATTGGGGTCACACTGACATTTTGGAGGgagaag
aaatcaaagaaacttGAATGGACAAGCTTAATGGGGACAGATAAGAAGAA
AATGCTAAGAAAGTTGCCACAATACTTCAGTGAATTGCTCCCTGAGAAAG
ATGTCTTACCAACACAGCAACTTTGGAAGGTCTTTGAAGAACTGTACGAC
ACGATCAACAAACCAAAATTGACGGAGGTAGAAATTGACACATTCCAACA
AAAGaccTACGAGTGGATTGGTAGGCTCAAGAAGATGAACGGTTGTGGAT
ATAGTTGGAGCTATCCTGTGACACCCTACATCCATATTTTGGCTAAGCAT
GTACCTGACATTCTGCGAAAATATGGAACCTTGCGAATCTTCTCTGGCCA
AGGTGTCGAGAAGAAAAATGATGATTTGAGGaagatttttcactcaaaaa
tcAATCGAAAGGACGCATGTGTGAATCTTTTGAAAGTCGAGAAGAGAATG
AGATGCCTGGAAGAGGAgggttttgaaagaaaaaaaagatcatacctcaA
GAAGGCCGAAGCATAGATGAAAAGGATTGGGGTCACACTGACATTTTGGA
GGgagaagaaatcaaagaaacttGAATGGACAAGCTTAATGGGGACAGAT
AAGAAGAAAATGCTAAGAAAGTTGCCACAATACTTCAGTGAATTGCTCCC
TGAGAAAGATGTCTTACCAACACAGCAACTTTGGAAGGTCTTTGAAGAAC
TGTACGACACGATCAACAAACCAAAATTGACGGAGGTAGAAATTGACACA
TTCCAACAAAAGaccTACGAGTGGATTGGTAGGCTCAAGAAGATGAACGG
TTGTGGATATAGTTGGAGCTATCCTGTGACACCCTACATCCATATTTTGG
CTAAGCATGTACCTGACATTCTGCGAAAATATGGAACCTTGCGAATCTTC
TCTGGCCAAGGTGTCGAGAAGAAAAATGATGATTTGAGGaagatttttca
ctcaaaaatcAATCGAAAGGACGCATGTGTGAATCTTTTGAAAGTCGAGA
AGAGAATGAGATGCCTGGAAGAGGAgggttttgaaagaaaaaaaagatca
tacctcaAGAAGGCCGAAGCATAGATGAAAAGGATTGGGGTCACACTGAC
ATTTTGGAGGgagaagaaatcaaagaaacttGAATGGACAAGCTTAATGG
GGACAGATAAGAAGAAAATGCTAAGAAAGTTGCCACAATACTTCAGTGAA
TTGCTCCCTGAGAAAGATGTCTTACCAACACAGCAACTTTGGAAGGTCTT
TGAAGAACTGTACGACACGATCAACAAACCAAAATTGACGGAGGTAGAAA
TTGACACATTCCAACAAAAGaccTACGAGTGGATTGGTAGGCTCAAGAAG
ATGAACGGTTGTGGATATAGTTGGAGCTATCCTGTGACACCCTACATCCA
TATTTTGGCTAAGCATGTACCTGACATTCTGCGAAAATATGGAACCTTGC
GAATCTTCTCTGGCCAAGGTGTCGAGAAGAAAAATGATGATTTGAGGaag
atttttcactcaaaaatcAATCGAAAGGACGCATGTGTGAATCTTTTGAA
AGTCGAGAAGAGAATGAGATGCCTGGAAGAGGAgggttttgaaagaaaaa
aaagatcatacctcaAGAAGGCCGAAGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042289XLOC_042289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067725-exon-scaffold_473-1491911889:105710..106243TCONS_00067725-exon-scaffold_473-1491911889:105710..106243Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1510915933:105710..106243TCONS_00067725-exon-scaffold_473-1510915933:105710..106243Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1575043694:105710..106243TCONS_00067725-exon-scaffold_473-1575043694:105710..106243Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1491911889:106504..106578TCONS_00067725-exon-scaffold_473-1491911889:106504..106578Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1510915933:106504..106578TCONS_00067725-exon-scaffold_473-1510915933:106504..106578Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1575043694:106504..106578TCONS_00067725-exon-scaffold_473-1575043694:106504..106578Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1491911889:106682..106829TCONS_00067725-exon-scaffold_473-1491911889:106682..106829Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1510915933:106682..106829TCONS_00067725-exon-scaffold_473-1510915933:106682..106829Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1575043694:106682..106829TCONS_00067725-exon-scaffold_473-1575043694:106682..106829Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1491911889:106930..107228TCONS_00067725-exon-scaffold_473-1491911889:106930..107228Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1510915933:106930..107228TCONS_00067725-exon-scaffold_473-1510915933:106930..107228Clytia hemisphaericaexon
TCONS_00067725-exon-scaffold_473-1575043694:106930..107228TCONS_00067725-exon-scaffold_473-1575043694:106930..107228Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067725-proteinTCONS_00067725-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:105710..107228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.441429	0.516055	1.10494	1.31897	0.162182	0.0932448	0.0583892	0.520798	0.423562	0.441879	0.734166	0.665641	0.995941	0.441463	0.467657	0.307634	0.106033	0.167206	0.376111	0.251738	0.450222	0.922704	0.664409	0.459224	0.888073	2.11253	0.291989	0.626735	0.38434	0.56376
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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