TCONS_00067620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067620
Unique NameTCONS_00067620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067620 ID=TCONS_00067620|Name=TCONS_00067620|organism=Clytia hemisphaerica|type=transcript|length=525bp
AATTATAATAAACTTGGTAATTGGTTGTTTTATGTTCGTTGACTCCTTCA
GTACCAGAAATATCACATCCATTTCAAAGACGACAAGATTGAATGTGATG
ATGATCATGTTGACAGTAATTATAATAAACTTGGTAATTGGTTGTTTTAT
GTTCGTTGACTCCTTCAGTACCAGAAATATCACATCCATTTCAAAGACGA
CAAGATTGAATGTGATGATGATCATGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATTGAATGTGATGATGATCATGTTGACAGTA
ATTATGATAAACTTGGTAATTGGTTGTTTTATGTTCGTTGACTCCTTCAG
TACCAGAAATATCACATCCATTTCAAAGACGACAAAATGGAATGTGATGA
TGATCATGATGATAACAATTATAATAAACTTGGTAATTGGTTGTTTTATG
TTCGTTGACTCCTTCAGTACCAGAAATATCACATCCATTTCAAAGACGAC
AAAATTGAATGTGATGATGATCATG
Run BLAST on NCBI

protein sequence of TCONS_00067620-protein

>TCONS_00067620-protein ID=TCONS_00067620-protein|Name=TCONS_00067620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MIIITFNFVVFEMDVIFLVLKESTNIKQPITKFIIIVIIMIIITFHFVVF
EMDVIFLVLKESTNIKQPITKFIIITVNMIIITFNXXXXXXXXXXXXXXX
Run BLAST on NCBI

transcript from alignment at scaffold_471:312343..312867

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067620 ID=TCONS_00067620|Name=TCONS_00067620|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at scaffold_471:312343..312867 (Clytia hemisphaerica)
CATGATCATCATCACATTCAATTTTGTCGTCTTTGAAATGGATGTGATAT
TTCTGGTACTGAAGGAGTCAACGAACATAAAACAACCAATTACCAAGTTT
ATTATAATTGTTATCATCATGATCATCATCACATTCCATTTTGTCGTCTT
TGAAATGGATGTGATATTTCTGGTACTGAAGGAGTCAACGAACATAAAAC
AACCAATTACCAAGTTTATCATAATTACTGTCAACATGATCATCATCACA
TTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ATGATCATCATCACATTCAATCTTGTCGTCTTTGAAATGGATGTGATATT
TCTGGTACTGAAGGAGTCAACGAACATAAAACAACCAATTACCAAGTTTA
TTATAATTACTGTCAACATGATCATCATCACATTCAATCTTGTCGTCTTT
GAAATGGATGTGATATTTCTGGTACTGAAGGAGTCAACGAACATAAAACA
ACCAATTACCAAGTTTATTATAATT

Coding sequence (CDS) from alignment at scaffold_471:312343..312867

>TCONS_00067620 ID=TCONS_00067620|Name=TCONS_00067620|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_471:312343..312867 (Clytia hemisphaerica)
ATGATCATCATCACATTCAATTTTGTCGTCTTTGAAATGGATGTGATATT
TCTGGTACTGAAGGAGTCAACGAACATAAAACAACCAATTACCAAGTTTA
TTATAATTGTTATCATCATGATCATCATCACATTCCATTTTGTCGTCTTT
GAAATGGATGTGATATTTCTGGTACTGAAGGAGTCAACGAACATAAAACA
ACCAATTACCAAGTTTATCATAATTACTGTCAACATGATCATCATCACAT
TCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042229XLOC_042229Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067620-proteinTCONS_00067620-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067620-exon-scaffold_471-1491911889:312343..312867TCONS_00067620-exon-scaffold_471-1491911889:312343..312867Clytia hemisphaericaexon
TCONS_00067620-exon-scaffold_471-1510915933:312343..312867TCONS_00067620-exon-scaffold_471-1510915933:312343..312867Clytia hemisphaericaexon
TCONS_00067620-exon-scaffold_471-1575043694:312343..312867TCONS_00067620-exon-scaffold_471-1575043694:312343..312867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:312343..312867 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.336814	0.437929	1.39831	0.124366	1.63406	0.774754	0	0.135132	0.204217	0.234377	1.22763	0.149544	0	0	0	0	0	0.372935	0	0	4.10043	4.76523	1.54474	5.96866	0.361622	0.322739	1.07762	0.164296	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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