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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067562 ID=TCONS_00067562|Name=TCONS_00067562|organism=Clytia hemisphaerica|type=transcript|length=4071bpRun BLAST on NCBI protein sequence of TCONS_00067562-protein >TCONS_00067562-protein ID=TCONS_00067562-protein|Name=TCONS_00067562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp MADQVVTAAAMVEHLNDHIIGKLNEHIVEKLNEEIHTEETMTTVEAVVVGRun BLAST on NCBI transcript from alignment at scaffold_471:232935..246111+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067562 ID=TCONS_00067562|Name=TCONS_00067562|organism=Clytia hemisphaerica|type=transcript|length=13177bp|location=Sequence derived from alignment at scaffold_471:232935..246111+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_471:232935..246111+ >TCONS_00067562 ID=TCONS_00067562|Name=TCONS_00067562|organism=Clytia hemisphaerica|type=CDS|length=24915bp|location=Sequence derived from alignment at scaffold_471:232935..246111+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067562 vs. Swiss-Prot (Human)
Match: ZN724 (Zinc finger protein 724 OS=Homo sapiens GN=ZNF724 PE=2 SV=3) HSP 1 Score: 167.933 bits (424), Expect = 6.414e-43 Identity = 114/323 (35.29%), Postives = 153/323 (47.37%), Query Frame = 2
Query: 860 ELPHKCDECTRSYSTLRKLKDHQRKLHTNLGLYQCSECPKQFNTKRSLQMHMNRHTGIGPHACPGCGKRYMTPQELVFHKRSCNGLVDKEFTCEQCGKRFATKTHLVFHMKIHLPDDEKPFKCQFCTRTFAYNHDCVHHMRLHLGEKPYKCTECDKAFHRKSYLTEHMFVHTGISKYQCETCKQYFRTQQMLQTHVKNIHILKKTAKTPRARNARPNDKSPAKRNT----KKKYRCEDCDKEFKFVKEYHFHCAVNHKGSKLMMEEGREEEVLADFEPTMV-------------YKCRHCEKSFRYVSLLKKHAETHKLDRGD 1777
E P+ C+ C R+++ L H+R +HT Y+C EC K FN +L H HTG P+ C CGK + L HKR G +K + CE+CGK F T +HL H +IH EKP+KC+ C + F H +H GEKPYKC EC KAF R S LTEH +HTG Y+CE C + F L TH K IH +K K A + A+ +K Y+CE+C K F Y + HK + + EE F + YKC+ C K+F S L H + H +++ D
Sbjct: 307 EKPYICEHCGRAFNQSSNLTKHKR-IHTGDKPYKCEECGKAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNVSSTLTQHKRIHTG--EKPYKCEECGKAFNTSSHLTTHKRIH--TGEKPYKCEECGKAFNQFSQLTTHKIIHTGEKPYKCKECGKAFKRSSNLTEHRIIHTGEKPYKCEECGKAFNLSSHLTTH-KKIHTGEKPYKCKECGKAFNQSSTLARHKIIHAGEKPYKCEECGKAF-----YQYSNLTQHKIIHTGEKPYKCEECGKAFNWSSTLTKHKVIHTGEKPYKCKECGKAFNQCSNLTTHKKIHAVEKSD 618 HSP 2 Score: 145.976 bits (367), Expect = 5.537e-36 Identity = 98/285 (34.39%), Postives = 141/285 (49.47%), Query Frame = 2
Query: 725 RADDHENALTAYKQVNSPEHKISDEPVLITDSKPPPLKNVEKV-TDELPHKCDECTRSYSTLRKLKDHQRKLHTNLGLYQCSECPKQFNTKRSLQMHMNRHTGIGPHACPGCGKRYMTPQELVFHKRSCNGLVDKEFTCEQCGKRFATKTHLVFHMKIHLPDDEKPFKCQFCTRTFAYNHDCVHHMRLHLGEKPYKCTECDKAFHRKSYLTEHMFVHTGISKYQCETCKQYFRTQQMLQTHVKNIHILKKTAKTPRARNARPNDKSPAKRNTKKKYRCEDCDKEF 1576
+A + + LT +K++++ E E + L +++ T E P+KC+EC ++++T L H+R +HT Y+C EC K FN L H HTG P+ C CGK + L H+ G +K + CE+CGK F +HL H KIH EKP+KC+ C + F + H +H GEKPYKC EC KAF++ S LT+H +HTG Y+CE C + F L H K IH T + P Y+C++C K F
Sbjct: 345 KAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNTSSHLTTHKR-IHTGEKPYKCEECGKAFNQFSQLTTHKIIHTGEKPYKCKECGKAFKRSSNLTEHRIIHTG--EKPYKCEECGKAFNLSSHLTTHKKIH--TGEKPYKCKECGKAFNQSSTLARHKIIHAGEKPYKCEECGKAFYQYSNLTQHKIIHTGEKPYKCEECGKAFNWSSTLTKH-KVIH----TGEKP--------------------YKCKECGKAF 599 HSP 3 Score: 137.502 bits (345), Expect = 2.924e-33 Identity = 119/400 (29.75%), Postives = 175/400 (43.75%), Query Frame = 2
Query: 692 GEQTVQDTNGERADD----HENALTAYKQ-VNSPEHKISDEPVLITDSKPPPLKNVEKVTDELPHKCDECTRSYSTLRKLKDHQRKLHTNLGLYQCSECPKQFNTKRSLQMHMNRHTGIGPHACPGCGKRYMTPQELVFHKRSCNGLVDKEFTCEQCGKRFATKTHLVFHMKIHLPDD--------------------------EKPFKCQFCTRTFAYNHDCVHHMRLHLGEKPYKCTECDKAFHRKSYLTEHMFVHTGISKYQCETCKQYFRTQQMLQTHVKNIHILKKTAK---TPRARNARPNDKSPAKRNTKKK-YRCEDCDKEFKFVKEYHFHCAVNHKGSK--LMMEEGREEEVLADFEPTMV-------YKCRHCEKSFRYVSLLKKHAETH 1759
G +Q G ++ D H+ + + Q + + + KI + D N K T++ P KC EC +S+ L L H+R +HT + Y+ EC K FN +L H HTG + C CG + L HK G +K + E+CGK F +HL H IH ++ EKP+ C+ C R F + + H R+H G+KPYKC EC KAF+ S LT+H +HTG Y+CE C + F L H K IH +K K +A N + + + +T +K Y+CE+C K F + H + H G K E G+ + ++ + YKC C K+F S L H + H
Sbjct: 107 GHHNLQLKKGYKSVDEYKVHKGSYNGFNQCLTTTQSKIFQCDKYVKDFHKFSNSNRHK-TEKNPFKCKECGKSFCVLSHLTQHKR-IHTTVNSYKLEECGKAFNVSSTLSQHKRIHTGQKHYKCEECGIAFNKSSHLNTHKIIHTG--EKSYKREECGKAFNISSHLTTHKIIHTGENAYKCKECGKAFNQSSTLTRHKIIHAGEKPYICEHCGRAFNQSSNLTKHKRIHTGDKPYKCEECGKAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNVSSTLTQH-KRIHTGEKPYKCEECGKAFNTSSHLTTHKRIHTGEKPYKCEECGKAFNQFSQLTTH-KIIHTGEKPYKCKECGKAFKRSSNLTEHRIIHTGEKPYKCEECGKAFNLSSHLTTHKKIH 500 HSP 4 Score: 137.117 bits (344), Expect = 4.662e-33 Identity = 109/315 (34.60%), Postives = 150/315 (47.62%), Query Frame = 2
Query: 854 TDELPHKCDECTRSYSTLRKLKDHQRKLHTNLGLYQCSECPKQFNTKRSLQMHMNRHTGIGPHACPGCGKRYMTPQELVFHKRSCNGLVDKEFTCEQCGKRFATKTHLVFHMKIHLPDDEKPFKCQFCTRTFAYNHDCVHHMRLHLGEKPYKCTECDKAFHRKSYLTEHMFVHTGISKYQCETCKQYFRTQQMLQTHVKNIHILKKTAK---TPRARNARPNDKSPAKRNTKKK-YRCEDCDKEFKFVKEYHFHCAVNHKGSK-LMMEEGREEEVLADFEPT--------MVYKCRHCEKSFRYVSLLKKHAETH 1759
T + +KC+EC +++ L H + +HT Y+ EC K FN L H HTG + C CGK + L HK G +K + CE CG+ F ++L H +IH D KP+KC+ C + F + H R+H GEKPYKC EC KAF+ S LT+H +HTG Y+CE C + F T L TH K IH +K K +A N + +T +K Y+C++C K FK H + H G K EE + L+ T YKC+ C K+F S L +H H
Sbjct: 221 TGQKHYKCEECGIAFNKSSHLNTH-KIIHTGEKSYKREECGKAFNISSHLTTHKIIHTGENAYKCKECGKAFNQSSTLTRHKIIHAG--EKPYICEHCGRAFNQSSNLTKHKRIHTGD--KPYKCEECGKAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNTSSHLTTH-KRIHTGEKPYKCEECGKAFNQFSQLTTHKIIHTGEKPYKCKECGKAFKRSSNLTEH-RIIHTGEKPYKCEECGKAFNLSSHLTTHKKIHTGEKPYKCKECGKAFNQSSTLARHKIIH 528 The following BLAST results are available for this feature:
BLAST of TCONS_00067562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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