|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072239 ID=TCONS_00072239|Name=TCONS_00072239|organism=Clytia hemisphaerica|type=transcript|length=1074bp
AAGTGTTTCCTGAACTTTCAACATAGTTGAAGAAAttctttggtattttt
tatttgaagcgAGTCATCTTTCGTTTACACATCAACTTATGATTTAGACA
TGCCTTTGTTGAACATAGGATTTTGTACGCATTTTCTAAAGTCCTACAAT
GTACACTCTTTGTCGCTATCgtgtggaaaccactctcatGGGATTACTCT
TGATTGCATTGACACGGTTACAAGCAAagaagagtgcacacttaaagtga
TTGGACTTTAATTATTTTGTTGCAAAACAGTAAATTTTATACCTGGTACT
TTAGACGGCTTTACAGCGGCTGggaaagttttgttttgttttgtttgtac
aTACACGGTAAAAGCCCaagatttgattaaatttttgttAGATACATGTT
TTATAAatcttttgttaatttttgtcaagattatttgtttttgtattttg
atacacgtttttataagaacatctaagaTTATTAAAGTCTCGGATGTTCa
taagtttttgagttttaagcctaaaaatgttcttaaatattTAATTGGGT
GTCTTAGATTCCAcgaagccttgaaatgttctttccttgtttttatatag
tttgtttattcttataaaaaacgtgtactttgaATCGATGCAAGATTTTT
ACCATAGGGTATATTTCAGATATAGATAAATTTATGTATATTTTAAAGAG
TATTTTGTtcaagttttgatatttttacgtTTCCAAGataatttatttgt
tttattagaAAAATGGCTGTGAGTGCTTGAAGGTTGGGTTATGGATTACA
TCTTCCCcatgaaattttcatttaatgTTTTTGTCTTTGATCCCATCCCG
CATCAATTTTTATGGTATATTTTGATTGCTCCTACCTGTACAGATTTGCC
ATATAAACTTtgtctcattttttttttattttcaaaaatttatttgagtA
ATTTTTATTTCCACTTTAGATGTATTTTATATTGAACAACGTCAAATAGG
CTAGTTTTTTGATAATTCGTCGTGTTTTTCGCACATAAaatttttatgtt
aaaaagaaCACATTTCAATGTATA Run BLAST on NCBI transcript from alignment at scaffold_71:511940..513013 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072239 ID=TCONS_00072239|Name=TCONS_00072239|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at scaffold_71:511940..513013 (Clytia hemisphaerica)
TATACATTGAAATGTGttctttttaacataaaaattTTATGTGCGAAAAA
CACGACGAATTATCAAAAAACTAGCCTATTTGACGTTGTTCAATATAAAA
TACATCTAAAGTGGAAATAAAAATTactcaaataaatttttgaaaataaa
aaaaaaatgagacaAAGTTTATATGGCAAATCTGTACAGGTAGGAGCAAT
CAAAATATACCATAAAAATTGATGCGGGATGGGATCAAAGACAAAAAcat
taaatgaaaatttcatgGGGAAGATGTAATCCATAACCCAACCTTCAAGC
ACTCACAGCCATTTTtctaataaaacaaataaattatCTTGGAAacgtaa
aaatatcaaaacttgaACAAAATACTCTTTAAAATATACATAAATTTATC
TATATCTGAAATATACCCTATGGTAAAAATCTTGCATCGATtcaaagtac
acgttttttataagaataaacaaactatataaaaacaaggaaagaacatt
tcaaggcttcgTGGAATCTAAGACACCCAATTAaatatttaagaacattt
ttaggcttaaaactcaaaaacttatGAACATCCGAGACTTTAATAAtctt
agatgttcttataaaaacgtgtatcaaaatacaaaaacaaataatcttga
caaaaattaacaaaagatTTATAAAACATGTATCTaacaaaaatttaatc
aaatcttGGGCTTTTACCGTGTAtgtacaaacaaaacaaaacaaaacttt
ccCAGCCGCTGTAAAGCCGTCTAAAGTACCAGGTATAAAATTTACTGTTT
TGCAACAAAATAATTAAAGTCCAAtcactttaagtgtgcactcttctTTG
CTTGTAACCGTGTCAATGCAATCAAGAGTAATCCCatgagagtggtttcc
acacGATAGCGACAAAGAGTGTACATTGTAGGACTTTAGAAAATGCGTAC
AAAATCCTATGTTCAACAAAGGCATGTCTAAATCATAAGTTGATGTGTAA
ACGAAAGATGACTcgcttcaaataaaaaataccaaagaaTTTCTTCAACT
ATGTTGAAAGTTCAGGAAACACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072239-exon-scaffold_71-1491911889:511940..513013 | TCONS_00072239-exon-scaffold_71-1491911889:511940..513013 | Clytia hemisphaerica | exon |
| TCONS_00072239-exon-scaffold_71-1510915933:511940..513013 | TCONS_00072239-exon-scaffold_71-1510915933:511940..513013 | Clytia hemisphaerica | exon |
| TCONS_00072239-exon-scaffold_71-1575043694:511940..513013 | TCONS_00072239-exon-scaffold_71-1575043694:511940..513013 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:511940..513013 . |
Blast
The following BLAST results are available for this feature:
|
