TCONS_00067541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067541
Unique NameTCONS_00067541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067541 ID=TCONS_00067541|Name=TCONS_00067541|organism=Clytia hemisphaerica|type=transcript|length=515bp
NTCCAGTGTTTGTTCTTTGTGCGCGATGAACTCGTCGACTCGTTTCTTTT
CCTTGGTGACAGTGATCTTGGAGTTGTATTCCTTCGAGTCCTGTATGTAC
TTGGTGATTTGATCCAAGCCTGTCTTGATTGTAAGCTGGAGATCGTCCGA
TAAGGCTTCTCCCGATGACACGATTCTGCGTGATTTTGTACGAATTGATT
TCCGCATTAATTCGAATTTGGCCAGTAACGACTTGAGGTCCTCTGGTTGT
ATGTTTTCGAACTTATGTTCGTTGATGAGATCTGGTATCTCGTCACACAT
TTACTTCGATGGCAATGCGTCCTTCATTTACTGAGGTGTTGTGCGGTTGA
TGATGAGGAGGATCCATTTCGTCCTCGGATGAACTCAGCTCCTTGTAGTT
GACACGTTTTGTCTGACGGAGCAACATGCATTGATTGATTCAAATGAACA
GGCGAGTGAGTCAgctctgtttgaatgttgtGCACGGAAATAAACTGACA
CAGTTTGGAACTTCG
Run BLAST on NCBI

protein sequence of TCONS_00067541-protein

>TCONS_00067541-protein ID=TCONS_00067541-protein|Name=TCONS_00067541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MCDEIPDLINEHKFENIQPEDLKSLLAKFELMRKSIRTKSRRIVSSGEAL
SDDLQLTIKTGLDQITKYIQDSKEYNSKITVTKEKKRVDEFIAHKEQTLX
Run BLAST on NCBI

transcript from alignment at scaffold_470:6814..7328

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067541 ID=TCONS_00067541|Name=TCONS_00067541|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at scaffold_470:6814..7328 (Clytia hemisphaerica)
CGAAGTTCCAAACTGTGTCAGTTTATTTCCGTGCacaacattcaaacaga
gcTGACTCACTCGCCTGTTCATTTGAATCAATCAATGCATGTTGCTCCGT
CAGACAAAACGTGTCAACTACAAGGAGCTGAGTTCATCCGAGGACGAAAT
GGATCCTCCTCATCATCAACCGCACAACACCTCAGTAAATGAAGGACGCA
TTGCCATCGAAGTAAATGTGTGACGAGATACCAGATCTCATCAACGAACA
TAAGTTCGAAAACATACAACCAGAGGACCTCAAGTCGTTACTGGCCAAAT
TCGAATTAATGCGGAAATCAATTCGTACAAAATCACGCAGAATCGTGTCA
TCGGGAGAAGCCTTATCGGACGATCTCCAGCTTACAATCAAGACAGGCTT
GGATCAAATCACCAAGTACATACAGGACTCGAAGGAATACAACTCCAAGA
TCACTGTCACCAAGGAAAAGAAACGAGTCGACGAGTTCATCGCGCACAAA
GAACAAACACTGGAN

Coding sequence (CDS) from alignment at scaffold_470:6814..7328

>TCONS_00067541 ID=TCONS_00067541|Name=TCONS_00067541|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_470:6814..7328 (Clytia hemisphaerica)
ATGTGTGACGAGATACCAGATCTCATCAACGAACATAAGTTCGAAAACAT
ACAACCAGAGGACCTCAAGTCGTTACTGGCCAAATTCGAATTAATGCGGA
AATCAATTCGTACAAAATCACGCAGAATCGTGTCATCGGGAGAAGCCTTA
TCGGACGATCTCCAGCTTACAATCAAGACAGGCTTGGATCAAATCACCAA
GTACATACAGGACTCGAAGGAATACAACTCCAAGATCACTGTCACCAAGG
AAAAGAAACGAGTCGACGAGTTCATCGCGCACAAAGAACAAACACTGGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042183XLOC_042183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067541-exon-scaffold_470-1491911889:6814..7328TCONS_00067541-exon-scaffold_470-1491911889:6814..7328Clytia hemisphaericaexon
TCONS_00067541-exon-scaffold_470-1510915933:6814..7328TCONS_00067541-exon-scaffold_470-1510915933:6814..7328Clytia hemisphaericaexon
TCONS_00067541-exon-scaffold_470-1575043694:6814..7328TCONS_00067541-exon-scaffold_470-1575043694:6814..7328Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067541-proteinTCONS_00067541-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_470supercontigscaffold_470:6814..7328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51706	1.65309	1.26646	1.1481	1.60416	0.991135	1.18777	1.13047	0.904233	2.47589	1.28423	0.881839	0.583616	0.567002	0.791822	0.549978	1.17334	0.848691	0.469654	0.899995	0.572287	0.557734	0.378116	0.423396	1.11186	0.472809	0.251492	0	0.162761	0.847157
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top