TCONS_00006692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006692
Unique NameTCONS_00006692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006692 ID=TCONS_00006692|Name=TCONS_00006692|organism=Clytia hemisphaerica|type=transcript|length=1138bp
aattttcactgctttgtaaaattttcaaactacCTGATGACCTGAttttg
ctatactttacttttcaGAAAGAAGGTAACAAGAAACAAATCTTTACAGT
TATTTCCAAATATGTTCTTCCAGAATCAAGAAGACTCTCCTGTTTCTCCT
ACTACAGCTGCAAAAtcatttaaagaaaagaaatcttttGcTTCTCGAAA
ACGTGATGCAGACTCAGTTAAAGATCTTCACCCAGACAAATTACCAcTCA
TTATTGAAAGATATAAGCATGAAAAAGCTTTGCCCATGTTGGACAAGATA
AAATTTCTGGTTCCTTTTGATATGACTGTTGGTACCCTAACTAGTATTAT
AAGGAAAAGATTACAATTAAACTCTTCGCAGGCATTATTTATACTGTTCG
ACAATAAAAACATCTTCAGCGCATCTGGCGCTCTGTTAGACATTTATCGA
GATCAAAAGGATGAAGATGGTTTTCTCTATATTATTTATGCATCCCAAGA
GACTTTCGGATGATGTTTGGCTTTTCATGATGTTCTTCTGTTAAATGTTA
AACGTTAAACTGAAGGGGCCTGTCCATAGATTTTATGaggcccgaagggc
tagatatcttgtcacgtgacattacaaaagaatttcagcgcttgaccaat
cagaagcttcgcgggtttccgaaaacaatagcagcaatatcttttgcgat
attcacttttctttgcttggaagagcttaaagcactacatctagcccttc
gggctttataaatctatgagcCTGTCTCATACCAAGTTGCTAACGTGAAG
TTATCATAATAAATATTATAAGTCCATTCGGTTGAAAGTGTGTACTCTTT
TTTTGCTATTGTGTTAAAACCATGCCAGCGTAATTAGACTTTTTCCATTG
AGAGCGGTTTCCACATGGTAACAGAAAAAAGAGTGTACACCACTATTGTT
AGTGAATACAGAGTAAAATAAGGTTATGTAAAGTATTCATTGTATAGACA
CACTGTTTATTTTATCATAAAGAATTTTAAATGTAAATCGCTTGCATCat
gcatttcaaaaatattttgcattttATAAATTAGTGAAGaaaagttttat
taaaattGATCACTCTTCGAACATGCACTTTTAAGATA
Run BLAST on NCBI

protein sequence of TCONS_00006692-protein

>TCONS_00006692-protein ID=TCONS_00006692-protein|Name=TCONS_00006692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MFFQNQEDSPVSPTTAAKSFKEKKSFASRKRDADSVKDLHPDKLPLIIER
YKHEKALPMLDKIKFLVPFDMTVGTLTSIIRKRLQLNSSQALFILFDNKN
IFSASGALLDIYRDQKDEDGFLYIIYASQETFG
Run BLAST on NCBI

transcript from alignment at sc0000069:570759..587372-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006692 ID=TCONS_00006692|Name=TCONS_00006692|organism=Clytia hemisphaerica|type=transcript|length=16614bp|location=Sequence derived from alignment at sc0000069:570759..587372- (Clytia hemisphaerica)
AATTTTCACTGCTTTGTAAAATTTTCAAACTACCTGATGACCTGATTTTG CTATACTTTACTTTTCAGAAAGAAGGTAACAAGAAACAAATCTTTACAGT TATTTCCAAATATGTTCTTCCAGAATCAAGAAGACTCTCCTGTTTCTCCT ACTACAGCTGCAAAATCATTTAAAGAAAAGAAATCTTTTGGTAAGAGTTT TTCTTGAGCTGACCTGACTGAGTAGTATTATTATAGACTATAACTGTCTA ATGTTGACATCCCTCGTCTAAATTCGACACTCTTTTCTAGAGCTGAAAAT AATAGAAAAGTGGAAACTATTTTTCTTTGCTTAGTGGGAAGAGAGGATAA ATCCTTTTTCAATCACCAATTCCATCCAACTTTCATATTATATTTTAGGC AAGGGGAATATGATGTTCTGTTTACCAGTCAGGAACAGTCGCCTTATTAG GAGACGCCTCCTGATTAGGAGACCCGTCTCCTAATCAGGAGGTTCACGTC TCCTAATCAGGAGACGGGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAAGCCTAAAGCCC TTAAAATTGAGATCAAAGTTTTATGTCTCCTAATTAGGAGACGGGTCTCC TAATCAAGCGACCCCAAGCGACCTACATGTCTCCTAATCAAGAGACGTCT CCTAATCAGGAGGCGTCTCCTAATAAGGCGACTGTTCCTGACTGTTTACC GTCGCATTGCAAAAAATAAAAAATTTCTAAAACGCCCTTGTAGCTGCCCA CTGCTTAAAAAAATGCCTGCCCCATTCACGGGCGTGATTGGAACCATGTT TTTTACTCAAGGCGCACATTTAGTCAGTGTAGACCTAACTCTTCATACAA AAATTACAAGAAACGCATATTTGGACTTTGTACCCTATGCTGCACTCAAG CACTTGGGTCAAAATCCCGCAAAGGCGGGACAAAAATCAGTTTTTTGAAG TTTGCAAAAAAACGCCACATAGAAGATCTTTCAAATTCAGTATGTGAATA GAGCNNNNNNNNNNNNNNNNNNNNNNACCTAACTCTTCACACAAAAATTA CGGGAAACGCATGTTTGGACTTTGTACCCTATGCTGCACTCAAGCACTTA AGCCAAAGTCCCGCAAAAGCGGGACAAAAAGCAGTCTTGTGAAGTTTGCA AAAAAACGCCACATAGAAGATCTTTCAAATTCAGTATGTGAATAAAGCAG TAAAAAATACAACTTTTCTATTCTTCCTTTTTTTTGCAACAGTTCTAGGA ATGAAAATAAAGGGATAATGATAATTGAATACTATCCATTGATGACCCGC GGCACTATCGTAAAGCTAGAATTGCTTTGCGTGCTCTTCNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNGACTGAGCTGTGATAGATCATTTCGATGGAAG TTGTTGGAATGTTTACAAGGCTCTTGACAGAAAATCGTTTGTTTTATTGT CAATGATGACAGTGTGGTTATTAACTTTGTTATATCTGACAAATTGATGT TTGTAAGTGCACTTTATGGTTTTGATTCCCATTGAAGAATCATATTCTGG TTTTCATGTTATTAGATGCTGTTTTAGAGCTTTAGGTCTACACTGATAGA GCAGTAAAAATACAACTTTTCTATTTTTCCTTTTTTTTGCAAAAGTTCTA GTAATGAAAATAAAGGGATAATGTTAATTGAATACTATCCATTGATGATC CGCGGCACTATCGTAAACCTAGAATCGCTTCGCGTACTCTTCGCTTGAGA AAATGATTGACAGATTGAAGTTTTTCATCCCCGCGGTGCGCGCCGCGCGG GAGCTCAGGCGCTCTGCGAGAATTCTCGGCTCAATCCTCGGACCGCGCTA AAAAGGTAGACTGAGCCGTGATAGATCATTTCGATGGAAGTTGTTGGAAT GTTTACAAGGCTCTTGACAGAATATTGTTTGTTTTATTGTCAATGATGAC AGTGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNTGATGTTTGTAAGTGCACTTTATAGTTTTGAT TCCCATTGAAGAATCATATTCTGGTTTTCATGTTATTAGATGCTGTTTTA GAGCTTTAGAGCTACACTGTTAGTTAGTGAAGATGTTATTTTTGATCCAC TTTGAGTGTTTTGGATAGCTTGGCACAGGAAAAGAAGAAAATAATGAGTT TTTTTAAGAAATAATGCACTTTTTTTTGCGGCGGCTCAAGAGCATGCAGG CGGTCGACGGTAAACAGAACATCAAATTCCCCTCGCCTTATTCCTATCTC TAAAGAAGGGTGTCGAAATTAGAAGACGGATGTCATGATTAGACCAATTT ACGGTACCGTGAAGTCGAGTACCGTCAACTGCTCCAACTTGGGACTATCT TACGCAACATGGGACAGCCATTCCACCACCATTTCACTGAACCTCCAAAG TCATTTGATTTGAGTTTAATGAACCGCGTATTAAAAAATACACGATTTCT CTTTCGATTTTACAGTATATACTGGTATATAAGTGAAAATAAAGACCAGA TGTCAACAAGTCCCATGTTGCGTACACTCGTCCCAAGTTGGAGCAGTTGA CGGTATAACTTGCATCAGTGGAGGGAAACTTGCATAGCCATCAAATGACT GACCAATCAAAGCAGAAAAATTTCAAAACAAATGAACTACACAGCTCCGC TTGCAGCTCTACTCTACCATTTTGTTTTGATTTAACTTTGTATTTTAATG ACCAGCCAACTCATTCATTTCCAGACGGTGTCAATCGAACGAATCGAACA CTGAATCAATTGGACGCAATTGAACACAATCGAATTGCAATAGAATATTA CCCAGGATTTGCCGTTTGATTGCTTCGATTATGTTCGATTGCTTCGATTA TGTTCGATTGCTTCAATTGCGTTTTATTGCTTCGATTACGTTCGATTACA TTCGATTGATTCAATTGTATTATAGATTTTATTCATTTTCGTATGGTACT TAAGCGCTTGGCCGCCCACGCTCAAAAGCTCTAACAAAGTGATCCAATTT GATTTAATCGCAATCAAACTAAACAAACATATATTGTAATCAAACGAAAT TGAAGATTAATAATAATATAATAATAATAATAATAACGAATTTTTTAAGT GGCTGGCTCCGAAAAATTCTAGAGCTTTTAGACAGCTCAAGAATTGTTTC CACGAAGGGCCACTACGAACAGAACAAGAACAGTAACAAAAANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNTCAGCATCACGGCATTCCCTGGGTAGGTTATTCCAGATAGGAATTGTA GAGCTTGCGAAGGTTTTTGCTTCAAATCTGTTTCTGTTTTGCCGTACTGC TAAATTATTTTGAGCGGCTAATCTAGTGTAGTGGTCGTGAATGTTTCTAG CAAGATTTACACGCTCACAAATATATTCAGGAGCAAGATTGTTAATAGCT TTAAAAGTCATCAATGCAGAAGAATAGTCACAAAGCTGACGAAAATCTTT ATTCATTGTGTGGACTTGATTTATCTGCCGAGAAAGAGAATCAAACTTTC GTAATACTGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNGTACTAAAAGTATACTTTCAGTATATATTTTGATGTTTTAGGAAGT ATACTTTAAGTACTAAATTTTTGGAACAATATTCCATATACTTTAAGTAT ACTGTATGAAAGTGTACTTCATATATACTGCAAAAAAGTATAAATAAAGT ATACTTTCATAGAAGTTGCTAGTATTAACCACATGGCCATTCAAAACACA TTTTCAATGAAATTTGAAAAGTTCATGCCTAGGCTTATGAATTTCAAGAA ATTTTAAAACTAAACTCTATTAATCTGATACATTGAAAGTAACAGTAAAG TAACTTTAAGTAACATTGAAAGTAAATATTCTTAAAAGCTCTTTAGCAGA TAAAGAAAATCTGTATCCGCACTCACACCAGGTTTAACTTAAGTTAAACT ACCTAACTCATCATGCTGTCACAGACTGGTATAATCACAAACAAGATTCA TTACATTCATATAGTGCACCATTAGTTTTGAATAATATACAGGTAATCTT TATACTTACATTAGCAAGGTCGCTGCTCACCATCCATTGAACTTTACTTA TCGTTAAAGCAAACCCTTTCATCTTCAAATTTATAAATGTTTAAAAACTT TCAACTGTTCAAAAAATGGTCAAAAACAAATTTCTCTCACAACACCACAC TCATTTAATGTTCTGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA TGACATAGTTTCTCTGTTTTTTGAATCTGTTCCAATCAATAACAGTTTTC GTCCTGGATGCAATTTTTTTCAGATAATCCCTTCTTTTTATTGCATCTAG AAGCTCTTCTGTAACCCAGTGAGGGCTGGAATCGCGCAACCTCTTTTTGG TTAAAGGAGCGTGACGATTTAATATCTCGAGGATATTTTCATTGAACTGG GAGACAGCAGTATCAACATTGTTCGTATGGATTACTTTCGACCAATCACG GTTTCCTAGATCATCTAGAAATGCCTCTTGGTTGAAATTTTTGAAAGATC TGGAAGTGAGAAACCTTGGTGATTTTTGAATTTTAATTTTCGACCTTTTG ATACAAACAAGTGAGTGGTCACTTAAACCCATGTCAATGACTTGGCACTC AGTTGCCTCTTTACTATTTGACAGAATCAGATCAATCAAAGTAGATGAAG TTTGAGTCACCCTGGTGGGTGATTCGACATGCTGAACTAACGATTTATCT TTACCAACTGCTCCAACTTGCACTTGGGACTATCTGACAAAACATGGGAC GGCAATTTGGCCACCATTTCAACAGACCTCCAAAGTCATTTAATTTGAGT TAATGAACGGCATATTAAAAAAATACATGATTTCTTTTTTGCACCAGTAG GCTTTTAAATCGAAATATAAAAAAAGTCTGTAGTGGAACACACGCGAATG TCTGGAACGAAGAAGAACAAATTAGTGGCAAAACGATGGAGCGTTTGACG TCACTCGAGCGGCAACTTACACACTTGCTAATTACTAATCCCATCGGGCG ATCTCTAATTCTCCAATAGGCGTCCGGTCATTTTGAATGAAAGAAAAAGT TAAAAAGGGGCGCTATCAGTGAAAGTTTTCGTGACATGTTCTGACAGAAA GTGTGGTTGATAAACTTGGTGGAAGTATAAAAACAAATTTGTTGTCAAAG AGATTTATATAAAAGTAAGTGAAAATACAGGCCAGATATTAAACAATCCC ATGTTTCGACTAATCATCCTAAGTTGGAGCAGTTGACGGTAATTGACAAT CAATCAAACCAATCTAACTTTATATGAACGCAATCGAACACAATCAAATA TTACCCAGGAATCTTTCGTTCGATTGAGATTCGATTACCTTCAACCATTG AATTGCAATTATTCGATTGGATTCGATTAAGTTCGATTGGTTCGATTGAG ATCTTTGTTTGAAGCTGTTCAATTGACACCGTCTGGTCATTTGAGGGCTT TGCATGTTAGCCTCCAATGATCCAAGTTACCCGATCTCACGGTAGTGTGT GCACTAAAGTGGAGCGGGTGGTATTCAATAAACTGCCTGACCTCAACTGA GCAAAAAGAAAGGAGAGAAATGCTAGGACTGCAAATTACATTTAAAAGAT GCCTTGCACAGGCGACGCTATATTATATACATGTACCTTTGTGGCCACGT AGTAGACCTTTTTATAGGTAGCAAGATGCGGGATGTCATTTCTAACCAGA CAATGTTAATCATACAAGTTTGGACAAAAATCGAGAATAAACCAAAATTT TTCAAATTCACGAGCTTCAATTTGAGTAATTTTAGCCCCCACGTTAAGTG ATGAGATTTTAGCTCCCCCCAAGTACATAGGTCCCCCCAAAAAAAGTAGT GTACTTCCAGCCCCCTCCTTTTTAGGGAAAAGTTTAGGGTGTAACCCCCC CCCCAACCAGCAGGGGGGGGGCTGACACTATGTTATCTAACGATTATCCA TCAATTAATATAGACATGATTATAGATTAATTATCGAAAAACCCTGCCGA CGCACTGGCCAGTCTGGTGCGTTTGTCCGGTGCCAAAAAGTATCCCTCAG CCACACCAGAAACCTCTTGTCCGGTGATAATTTTTCGAGCTTCTGGACAC TGGAGAAAGTTTGTTTAAAAACAGTGTGCACCGGACACACCAGACTCATG TCCTGTGTTGAGATTTCCAGTGTTAAAAGTTTTCTCATCCAACACCGGAC TTTGTGCGTCATGTGTTAGTAAAGTCTGATGCGTCAGCAGGGTCGTGTTA TCGATTAAAAAATGCATCGATTAGCTATTCGCTACCTTATTTTTAAAGGG GCCTAAGTCCAGGTCCCCCCCCCAATTCTAAAAGGGCCGAAGTCCAGGTC CCCTCCAATTCTAAGTGGGCTTAAGTCCATTTTTATGAAAATTGAGATTT TTGTTTTTTCTGAATCTCTGGCTCACTGGCTTTCTTTTGATGTATCGAAC ATGAAGATTTGGAGGTAAAAAAGTCTAAAAATTTTGGTCTTTAGTTTTAA TAAAAACCACATTTAATTTTAAAAGGGCCTAAGTCCATCATGTTAGGGCC TAAGTCCAAAGTAATTAAATTGTTGAATCTTAAAAAGGCCTAAGTCCAGA AAGAGGGCTTAAGTCCAAACATTGATAGATTCTAGCTAATGTGAAAGGGC CTAAGTCCATTGTTACTGTAGGTAGGGGGGGGGTCCAAACATGACTTTTT TTGGAAATTTTTATGTTTAACCATCTTTGTAAAATTAATTTTTCATGCTG ATTCCGAATTTGAATTCCGTTTTTCCATATCTCTTACCCCTGAGCGGCTA CCGGAGACCCTTTTTTGGGAAAACCGCCCAAAACCGCTTAAAGTCAATTT TTTTGAAATTTTCCATTATGAATAGCTTTCTAGTGATGTGATATCTTTTT TAAATCAGTTTTTCATGCTGATTCCGAATCTGAAATTCATTTTGTCATAG CTCTCACCCTTGGCCTGGTATAGGAGGCTGTTTTTTTATTAAAATTTTCG AAACTAAGGAAAATTGATAATTTTAATAAAATGTTTCACTTTGAATGAAC TTTGAATGAAAAATTTAATGGTAGCTACTTGTTTTAGATCAAGTTTTCAT GCTGATTTCAAATTTCAAATTAGTTTCTGCATATCTCCTGCCACTGACCT GCTACGGGACCGGCTACATGTGGTTCCTTATTCAGAAAATATTGCAAAAA ATGTGCAAAAATCGATATTATTGAAAGGATATTTCTAAGCTTTTAGTTTG TCTGTGGCTTTTTGATACTTGGCTAATGCTATACATTNTTCTAAGCTTTT AGTTTGTCTGTGGCTTTTTGACACTTGGCTAATGTTATACATTCATCGTC ATAGGGTGTCTTGAGTACTATATCTTTATCCAATGAGCTAACCCTTTGTA CTGCTGCTATGAATTTATCTGCTCAACTAGTCATTAAGCAAAATTCAACC TGCTTAGAATCTCGTTTAAACTATCTTGAGCTAGTGAACTCCTTTCAAAT ACAATGATTCCCTAAATTAATTAAACATTGAAAAGTTGATAATTGTTTTT ACGAAGCCTTAAAATCATTTAAGGGGTAAGTTAAATTAAAATCACTAGGC TATACAGCTAATATATGGAATTTTTCAAATAACTTTAATTCAAACAAAGC ATATAAGAAAAGGTTTATAGTGAATCTATAGAAAGATATATACCAATATT TAAGAAATATAACCGATTCCTAAAGAGTAACTTCCAAACAAATGGACCGA TATGAAAGCATTTACTGTCTCCCTGGAAAGGAGGGACGGTTTACTACTTA GAAGTTCACAAGATAATTTAGTTTCTCAAAACTTTTTTCTAATTAACTTC TCAAAGAACCCTTGTTTGAACAGATAGTCCGGNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATATTGTAATT AAATCAACAGCTTAAGGTCTGATTTATTTTTAAAAAGCATTAGTTCTTCA AATCTATTCAAGCAAGTATTTAAGGGATGGATAAAACAATAGCGCCTTTT GATCGGTTCAATAAACAACTATTCAAATGTAGGATTTTTAGATTCTATCT ATTCGGTATAAGGTCTATAAATCCCTATGATTTTCATTGTAACTTAACCT TCCAAACAATGATATACGTCTTGTTAAAGCCAATATCAACTTTTGAATGT CCAATGTGGACAATCATTGCATTTTGAAGAATATTTTTACCAATTTGATT TTTACGTCTTTGATTATATTCTAAGCAGACAATTTAAAAGCAGCTCAGTC CATAGGGTTGCATCATTGCATAAAGTACTCAAAACTCTCTGTAACAAGGA ATGTACAACCAGATGTTTTGATAAATGGAATCCAAGTACAAGAATCTCCT TCAAAAAATATTCATTTCAGTACATTTTTGCGATATTTTCAGAATAAGGA ACCTCATGTAGCCGGCCCCGTAGCAGGCCATGGATATGAGATATGCAAAA ATTGATTTGAAATTCAGAATCAGCATGAAAATCTGATCTAAAACTAGTTG TTATCATTAAATTTTTCATTCAAAGTTCATTCAAATTCAAACATTTTCAA ATTATCAATTTTCCTTGGATTTGAAAATTTTAGTAAAAAAACAGCCTCCT ATACCAGGCCAAGGGTGAGAGCTATGACAAAATGAATTTCAGATTCGGAA TCAGCATGAAAAACTGATTTAAAAAAGATATCACATCACTAGAAAGCTAT TCAAAATGGAAAATTTTAAAAGAATTGACTTTTAGCGGTTTTGGGCGGTT TTCAGAGAAAAGGGTCTCTGGTAGCCGCTCAGGGGTAAGAGAAGGAAAAA CGGATTTCAAATTCGGAATCAGCATGAAAAATTAATTTAAACGAGCAACA TGCTGAATGGACCTACCTAATGATTAACATCAGATGAAAATAAGAAAAAA GTGACAATAACTGTACAAAAATTCAGAATGGAAAAATAAAGCTTGTGTGT TGAATAATGTAAAATAAATGTACTTTTAAGCTGTTTTTGGCCCAAATTTG CCCAAAAAAATTTTCCTTAAAAATCTGGCTCCGTCACATTTCGGGCATTG CCATTTTGCATCATTGTGCAAAAAATCAGAAAGAAAATAATGAGTCAACA TTGAGAAAAGCTTTATTTTCTTATTTGGTTAAAGGGAATTTCCCCAAAAT ACGAAAATCCGTCTTTTAAGGCGAATAAGAATTTTCCAGGAAAAACCACT TCAGCCATTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGGCAGTTTTTGG CCCAAATTTGCCCAAATATATTTTTTTTCGAAAATCAGGCTCCGACACAT TTTAGGCATTGCCATTTTGCATCATTGTGCAAAAAATCAGATAAAACTAA AGAGCCAATCCTGAGAAAAGCTGGTAACAGACGGACGAACGAACGGACGA ACGAACGGACATGGGTTAATTTATAGAACCTCCACCGGGGTACCCGGAGG TAGGTCCAAAAAGATGGTTAAACTCAAAAAGTGTAATTTTGGACCCCCCT ACTGTAGGATAGTGTTGCTATAGGAAAATGGTGATGCAAGTAGCCCCTAG GTTGCAACAACTCCTTGTAAATTTTCTTTTTTCTCTTTTCAATTTATAGA AAATGTAATGGACTTAGGCCTTTCAATTTTATATTTTCAAGCTTTAGAAA AATGTAGGATTTAGGCCTTTCAGATTCGCTGAGATTTCTGTGGACTATGA TGTAAAGAAAAAGGCTTTTCTAGTCATTTAGGACTTAGGCCTTTCTAAAT GAAAATATTTTATAATGATTTGGAAAATATAGATGGGTACTAAGTCCATA TGTTATAAAACTTGTTAATTTTAAAGAGGCCTAAGTCCTCTCTAGATCTT TTCCGGGGTGAAACAGGAATTATCCAATCTCCAACACAATGGCTTTTAAT TGGGAAGATATTAATTTGCCATAGGTCTCAGAAAATCCTTACTTTGTTAC TTTTATGTGGAAGATTGTGTCAGAATCAGGAGATTAAATCTTAAATCGCA ATTTACTCAAAATCACAAAAACGGACTTAGGCCCCTTTAAAATTAAGGCT CTAAGGACTTAGGCCCCTTTAAAATTAAGGCTCTCCGGACTTAGGCCCCT TTAAAAATAAGGTAGCGTATCGATTCAGTATCGATTGCAATAATATACCG ATTAACTATCGATTAGCTATCGATTTAGTATTGACTGCAATAATATATTG ATTAAGCATCGATTAAGTGTCGGTTAATATATCGATTTTTCATCAATTTC TTATCGATTATCAAAACAAAGAAAATTATATCCTATGGAAAATTTGGTTA TTTGCATCCATCTCTCTCGATTAATTTGTGCAGATGTAACAATATTAATA ATGCCACTGTCGTGCCATCATCAAACAAAGGATTTTCTGTTAGGAACCTT GTTAAACATTCCAGCAACTTCCATCAAAATGAACTGCAGCTTCTAAGTTT TACCATTTGAAAAACTTTTAAAACAACATGTGCGGTTTGTGTCACCCCCA GTCACGTGACATTTTTATCGAAACTAGCGCCGTAAAATATATTGACATTT TTATCGAAACTAGCCCCGTAAAATATATTGACATTTTTATCGAAACTAGC GCCGTAAATATATTGGAGAGTAAAATGTCTATGTATGGGGTCATACTACT TAGCTTTAGCAATTTATAGCTATGATCTAGGTAAATGTTTTTTTTTCTGA CTGTTTCATATGTTTGTTTGGAGGACAAAGGGTATTGGAAGGTTCACTGA AGGAGGACCTTTAACCAAGAAGTAATGTAAACCTGTGAAGTTATTACCAT GCGGATTTAAGGTACATACAGGTCAAAGTAATTGACACTAACTTTTTTTC CATTTTTTTTAAGCTTCTCGAAAACGTGATGCAGACTCAGTTAAAGATCT TCACCCAGACAAATTACCAGTGAGTACCAATTCAGTTTCATATTTATGTT TTTATCATGTGTAATTAGTTATAAAAAATCCTACACTCCTAAATCTTACA CTCAAAGGGTTTATAATGATGTTTTAAGGGCTTCAGGGTTTGATNCCTAA ATCTTACACTCAAAGGGTTTATAATGATGTTTCAAGGGCTTCAGGGTTTG ATTCAATGTAATTCTACAATCCAGTACATTCATATCTTAAAATTCTTTCC ACGTGACGAATAAACTGTTAAAAACAGAATAAGCTTTATTTTTCTTTCTA TGCTATGTTTTTCATTTCCTTTGTTTTTTTCTATTTAGCTCATTATTGAA AGATATAAGCATGAAAAAGCTTTGCCCATGTTGGACAAGATAAAATTTCT GGTTCCTTTTGATATGACTGTTGGTACCCTAACTAGTATTATAAGGTATG TAAAAAAACTTTTATATGCACTGCTTTATCTATTGCTAGACTGTTACGAG CTGACCTGCCTGTTGCAGATAAGATAATAAACATTGGCCTATTCCATTTT GTACTTGTGGGGATAAATGAACATTTTGCAGGGCGTTCCAGAAGAAGAAA TTCCGGGGGACCTAAGGAATTTGTTTATGTTTTTCCAGGGAATTATTGAA ATTTTAATTGAATACCTAATTCTCCAAGGGGTTGGATATCAAGTACCATC TATCTTTTATTTCCTTTTTCCTGGGGTCCTATGATATTCTCTTTTATATT CTAAAGTTTTAAAAGAAACGTTATAATTAATTTTCAAAGGGTTAAAAGCT ATTCTGAATTTTCCAAGACGTAGAATACCATTTTTACCAGTTAATTGAAT CCTTTTTTCCAGGGATTTTATTGCAAATTTTTCTAGTTTCCAGAGGATAT CCGCACAATTTCAGGAACTTTTTGTAGCTTGATAAGCTTTGTCCAACCCC TTATGGATATTAAAATTGAACAGCTCATTACACTAACTTAAAATATATTA AGTTAAGTTGCCATTCGTTTGAGAGAACCAGGTTTATTAGTTTAAAGGGT GTTAATCTTGGCCACAAGATTGGGATTCAATCCCAAGTTTATCATTTGTC GAGCTGTAGAATAAGAAAGCCTTATCTCCATTTTCATAATTTTGAGAAAG TTTCAAAAACTGCAAAGCTGTGACTCCATTTCTTGGAGTTACGGCTTTCT TTTTCTAAAAAAGACTGTCTCGATGCATCAAGAATACATTTTTAGAAAAA GAAAGTCCAAGAAATAGACTCACAGCTTTGAAGTTTTTGGACCTTTCTGA AAATTATGAAAATAGGATACGGCTTTCAAATTCTACAGCGACGCATTGCA GAATCAAAATATCAATATTCATTTTTTAGGAAAAGATTACAATTAAACTC TTCGCAGGCATTATTTATACTGTTCGACAATAAAAACATCTTCAGCGCAT CTGGCGCTCTGTTAGACATTTATCGAGATCAAAAGGATGAAGATGGTTTT CTCTATATTATTTATGCATCCCAAGAGACTTTCGGATGATGTTTGGCTTT TCATGATGTTCTTCTGTTAAATGTTAAACGTTAAACTGAAGGGGCCTGTC CATAGATTTTATGAGGCCCGAAGGGCTAGATATCTTGTCACGTGACATTA CAAAAGAATTTCAGCGCTTGACCAATCAGAAGCTTCGCGGGTTTCCGAAA ACAATAGCAGCAATATCTTTTGCGATATTCACTTTTCTTTGCTTGGAAGA GCTTAAAGCACTACATCTAGCCCTTCGGGCTTTATAAATCTATGAGCCTG TCTCATACCAAGTTGCTAACGTGAAGTTATCATAATAAATATTATAAGTC CATTCGGTTGAAAGTGTGTACTCTTTTTTTGCTATTGTGTTAAAACCATG CCAGCGTAATTAGACTTTTTCCATTGAGAGCGGTTTCCACATGGTAACAG AAAAAAGAGTGTACACCACTATTGTTAGTGAATACAGAGTAAAATAAGGT TATGTAAAGTATTCATTGTATAGACACACTGTTTATTTTATCATAAAGAA TTTTAAATGTAAATCGCTTGCATCATGCATTTCAAAAATATTTTGCATTT TATAAATTAGTGAAGAAAAGTTTTATTAAAATTGATCACTCTTCGAACAT GCACTTTTAAGATA

Coding sequence (CDS) from alignment at sc0000069:570759..587372-

>TCONS_00006692 ID=TCONS_00006692|Name=TCONS_00006692|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000069:570759..587372- (Clytia hemisphaerica)
GAAAAGATTACAATTAAACTCTTCGCAGGCATTATTTATACTGTTCGACA
ATAAAAACATCTTCAGCGCATCTGGCGCTCTGTTAGACATTTATCGAGAT
CAAAAGGATGAAGATGGTTTTCTCTATATTATTTATGCATCCCAAGAGAC
TTTCGGATGACTCATTATTGAAAGATATAAGCATGAAAAAGCTTTGCCCA
TGTTGGACAAGATAAAATTTCTGGTTCCTTTTGATATGACTGTTGGTACC
CTAACTAGTATTATAAGCTTCTCGAAAACGTGATGCAGACTCAGTTAAAG
ATCTTCACCCAGACAAATTACCAATGTTCTTCCAGAATCAAGAAGACTCT
CCTGTTTCTCCTACTACAGCTGCAAAATCATTTAAAGAAAAGAAATCTTT
TGGAAAAGATTACAATTAAACTCTTCGCAGGCATTATTTATACTGTTCGA
CAATAAAAACATCTTCAGCGCATCTGGCGCTCTGTTAGACATTTATCGAG
ATCAAAAGGATGAAGATGGTTTTCTCTATATTATTTATGCATCCCAAGAG
ACTTTCGGATGACTCATTATTGAAAGATATAAGCATGAAAAAGCTTTGCC
CATGTTGGACAAGATAAAATTTCTGGTTCCTTTTGATATGACTGTTGGTA
CCCTAACTAGTATTATAAGCTTCTCGAAAACGTGATGCAGACTCAGTTAA
AGATCTTCACCCAGACAAATTACCAATGTTCTTCCAGAATCAAGAAGACT
CTCCTGTTTCTCCTACTACAGCTGCAAAATCATTTAAAGAAAAGAAATCT
TTTGGAAAAGATTACAATTAAACTCTTCGCAGGCATTATTTATACTGTTC
GACAATAAAAACATCTTCAGCGCATCTGGCGCTCTGTTAGACATTTATCG
AGATCAAAAGGATGAAGATGGTTTTCTCTATATTATTTATGCATCCCAAG
AGACTTTCGGATGACTCATTATTGAAAGATATAAGCATGAAAAAGCTTTG
CCCATGTTGGACAAGATAAAATTTCTGGTTCCTTTTGATATGACTGTTGG
TACCCTAACTAGTATTATAAGCTTCTCGAAAACGTGATGCAGACTCAGTT
AAAGATCTTCACCCAGACAAATTACCAATGTTCTTCCAGAATCAAGAAGA
CTCTCCTGTTTCTCCTACTACAGCTGCAAAATCATTTAAAGAAAAGAAAT
CTTTTGGAAAAGATTACAATTAAACTCTTCGCAGGCATTATTTATACTGT
TCGACAATAAAAACATCTTCAGCGCATCTGGCGCTCTGTTAGACATTTAT
CGAGATCAAAAGGATGAAGATGGTTTTCTCTATATTATTTATGCATCCCA
AGAGACTTTCGGATGACTCATTATTGAAAGATATAAGCATGAAAAAGCTT
TGCCCATGTTGGACAAGATAAAATTTCTGGTTCCTTTTGATATGACTGTT
GGTACCCTAACTAGTATTATAAGCTTCTCGAAAACGTGATGCAGACTCAG
TTAAAGATCTTCACCCAGACAAATTACCAATGTTCTTCCAGAATCAAGAA
GACTCTCCTGTTTCTCCTACTACAGCTGCAAAATCATTTAAAGAAAAGAA
ATCTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003743XLOC_003743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006692-exon-sc0000069-1575043694:587183..587372TCONS_00006692-exon-sc0000069-1575043694:587183..587372Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1575043694:572904..572959TCONS_00006692-exon-sc0000069-1575043694:572904..572959Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1575043694:572478..572584TCONS_00006692-exon-sc0000069-1575043694:572478..572584Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1575043694:570759..571543TCONS_00006692-exon-sc0000069-1575043694:570759..571543Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1510915933:587183..587372TCONS_00006692-exon-sc0000069-1510915933:587183..587372Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1510915933:572904..572959TCONS_00006692-exon-sc0000069-1510915933:572904..572959Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1510915933:572478..572584TCONS_00006692-exon-sc0000069-1510915933:572478..572584Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1510915933:570759..571543TCONS_00006692-exon-sc0000069-1510915933:570759..571543Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1491911889:587183..587372TCONS_00006692-exon-sc0000069-1491911889:587183..587372Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1491911889:572904..572959TCONS_00006692-exon-sc0000069-1491911889:572904..572959Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1491911889:572478..572584TCONS_00006692-exon-sc0000069-1491911889:572478..572584Clytia hemisphaericaexon
TCONS_00006692-exon-sc0000069-1491911889:570759..571543TCONS_00006692-exon-sc0000069-1491911889:570759..571543Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006692-proteinTCONS_00006692-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:570759..587372 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.25184 9.68252 25.4459 24.4888 6.38603 4.6842 7.17548 6.76729 5.25569 4.13112 5.33932 3.84611 4.8183 4.8151 4.03547 4.18187 7.76582 5.79192 4.22198 3.91379 10.0033 10.3259 10.8505 11.3087 8.55533 14.2893 9.15022 4.89507 11.4481 9.84713
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004241Atg8-like
IPR029071Ubiquitin-rel_dom
Blast
BLAST of TCONS_00006692 vs. Swiss-Prot (Human)
Match: MLP3A (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.169e-34
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  205 DADSVKDLHPDKLPLIIERYKHEKALPMLDKIKFLVPFDMTVGTLTSIIRKRLQLNSSQALFILFDNKNIFSASGALLDIYRDQKDEDGFLYIIYASQETFG 510
            +   ++D HP K+P+IIERYK EK LP+LDK KFLVP  + +  L  IIR+RLQLN +QA F+L +  ++ S S  + DIY  +KDEDGFLY++YASQETFG
Sbjct:   19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
The following BLAST results are available for this feature:
BLAST of TCONS_00006692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLP3A2.169e-3455.88Microtubule-associated proteins 1A/1B light chain ... [more]
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