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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067489 ID=TCONS_00067489|Name=TCONS_00067489|organism=Clytia hemisphaerica|type=transcript|length=2262bp
gcttttccagaaaaaatccgttcatggggggtggaggatgaattgtccag
gggtattgaaaaaatgccaaaaaattgcaatgtccagggggtaaattcca
atgtccaggggtaattttttgtgtccaaggggttgatttgatgtttgtcc
aggggtataacccgtgtccagggggggttagaatcaaaatgtccaggggt
aattcatgaaaaaaataatatatcctccaccccccatgaacggatttttt
ctggaagagcccattttcaGATTTGCGGTATTCaagaataatttttaaat
ttgacagGCGATATGTTACATACCGAATTCCATTTTcacgaaaatttcaa
aacagcaaatatttagatttttcattccACGGTTAATTGAGCTCAGACAt
gaaaacaaatttacaaaatcgaTCAGCTTTTCGAATAAGGCAGAAGTTTA
GATCAAAGAGATAGGAAAGCTAAGCAAGAGAAAGAGCAAGTTTAGATAAA
ATGGTGGAAACAAGATAAAAGCTGTGaaaagatgaaaatatttttgcttc
tcttttttttcttctactaTGTCATTCTAGAGATCTTTGCATTGGACAAT
GGTAACAAGTACAAAGTACTGACCATCACTATCAAGAAGGAAAATGAGAG
ACAAAACCATACGATGGACGAGCAAACAGAACAAAGAAGCCTTGCAAAGa
ctTCCATCAAAAGACAAGCAGAAGATGAAGGCGAGAGTTTCGATGACAAA
TTCGTCAAAAAACTTGCAGCAAATCTTATCAGACAAGATCTAAGAAATAC
TTTACATGTTCAAAAAGCTGTATCAAACCTTGGCGCCAAAAGATCCCCAA
TGGGGAGTTTATTAGTGAATTCAGATATTCCTGACCAATTCATACAACAA
CCAGTGTCTACTGTTGGTGAAAAGAGATCATCACGTTATGAGAAATTGAT
GTTGCCAACGCCTCAAAGAGCTGCCAAAAGAAGGAAAACAAACAACATGT
CAAGATTCTCCAATAATACCGACGGAATCTTAAATGTTTTGAATTCAGTT
CGATCAATGGATAACGAGTTAGTGGACAAGGGAATCTCATCGCTGGCAGA
CCCAACCGGTGCATATGATGAAAAAGCAAATGCAATGAGAAAACTACTTC
AACCAGAAACAGATAGTAAGAATCAGAACGATGCAAAGGATAAATCATTC
ATAGTGGTGCTACCCGATACAGAGGGTGGGAAACCGAAAGAGTACCTGAT
CAAAGATtctttatcatcatcaaaacaaaagaaatctacCCTCAACTCAA
CACTTCATCAAGATGCCAGCCGAAAAGATACCAAACCAATTCCTCCACAA
GGCACTCACAATCTGGTCACTAACCAAACAAAAGTGAAGAATGCACCATC
AGATCAAACACCACTAACATTGGCAGATACAAACGTTCCAGTACCTATTG
ATTACCATTACCAAAGTCACCAAAACATTACTGCAAAACCACAAAATGCC
AATGCTAGCAGCTCCAACAGCAATCATATCACCAGTGCAACAACTAACAG
CTCCTCGTTTCAAAAAACCATTTCTTCATCGCCACTAAATGACACAAAGC
AACAGCAAcacagagaaaaaaattcaacaactGTAGCACCCCAAATACTT
CCTCAAGGAGAAATAAATCACAACAACTCCAGCAATTCTACCGTAAGAAA
GATTGATCAACAACCATCGAATTTGAATTCACAACTAATATTGAAACAAA
GTAAAGAACGAGTCATGAGCTACATGAAAACACTAAAAAACGCTAAACAA
CAAACGCATCTATTAAAACCAATGGATTATGTTTTGGATAAAAAGCAAAT
GCTTTTTCATTGAACTTGGGAGAATCAGTCTTTTTTTGCCCGTCATtaac
aaaatatttcatatGCAATGATATCTTATGCTTTTAATTTTAAGTCTTTG
ACTCTATATCCCTGTATCACTGTTCCTGACTCAAAGACTTTCCAACCTTT
GAATCTAAATTATCTTGAAAAAACTCTAGTTGGTAAGAAGTGCTACTATA
TAGACTGGATATTCGAGCCGTGAAccaatttgatatttttatggttACGA
TTTACAGAGAATTCATCTTatgaatatctttccaacagtgTATAACTTTT
AAATATAGCCAAAGAAGCGCTTTTTCTATAGACCTtattggagtttttga
tttttctaaaaaagcgatgcattgtgggattgtttcgagtgtattacaat
agaaatctctta Run BLAST on NCBI protein sequence of TCONS_00067489-protein >TCONS_00067489-protein ID=TCONS_00067489-protein|Name=TCONS_00067489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MKIFLLLFFFFYYVILEIFALDNGNKYKVLTITIKKENERQNHTMDEQTE
QRSLAKTSIKRQAEDEGESFDDKFVKKLAANLIRQDLRNTLHVQKAVSNL
GAKRSPMGSLLVNSDIPDQFIQQPVSTVGEKRSSRYEKLMLPTPQRAAKR
RKTNNMSRFSNNTDGILNVLNSVRSMDNELVDKGISSLADPTGAYDEKAN
AMRKLLQPETDSKNQNDAKDKSFIVVLPDTEGGKPKEYLIKDSLSSSKQK
KSTLNSTLHQDASRKDTKPIPPQGTHNLVTNQTKVKNAPSDQTPLTLADT
NVPVPIDYHYQSHQNITAKPQNANASSSNSNHITSATTNSSSFQKTISSS
PLNDTKQQQHREKNSTTVAPQILPQGEINHNNSSNSTVRKIDQQPSNLNS
QLILKQSKERVMSYMKTLKNAKQQTHLLKPMDYVLDKKQMLFH Run BLAST on NCBI transcript from alignment at scaffold_47:309814..313462- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067489 ID=TCONS_00067489|Name=TCONS_00067489|organism=Clytia hemisphaerica|type=transcript|length=3649bp|location=Sequence derived from alignment at scaffold_47:309814..313462- (Clytia hemisphaerica)
GCTTTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAATTGTCCAG
GGGTATTGAAAAAATGCCAAAAAATTGCAATGTCCAGGGGGTAAATTCCA
ATGTCCAGGGGTAATTTTTTGTGTCCAAGGGGTTGATTTGATGTTTGTCC
AGGGGTATAACCCGTGTCCAGGGGGGGTTAGAATCAAAATGTCCAGGGGT
AATTCATGAAAAAAATAATATATCCTCCACCCCCCATGAACGGATTTTTT
CTGGAAGAGCCCATTTTCAGATTTGCGGTATTCAAGAATAATTTTTAAAT
TTGACAGGCGATATGTTACATACCGAATTCCATTTTCACGAAAATTTCAA
AACAGCAAATATTTAGATTTTTCATTCCACGGTTAATTGAGCTCAGACAT
GAAAACAAATTTACAAAATCGATCAGCTTTTCGAATAAGGCAGAAGTTTA
GATCAAAGAGATAGGAAAGCTAAGCAAGAGAAAGAGCAAGTTTAGATAAA
ATGGTGGAAACAAGATAAAAGCTGTGAAAAGATGAAAATATTTTTGCTTC
TCTTTTTTTTCTTCTACTATGTCATTCTAGAGATCTTTGCATTGGACAAT
GGTAACAAGTACAAAGTACTGACCATCACTATCAAGAAGGAAAATGAGAG
ACAAAACCATACGATGGACGAGCAAACAGAACAAAGAAGCCTTGCAAAGG
TAAACGAAGTTCTCCTTTAAGCCCGATAAAATCATCATGACCTCCATAGT
TAACTGTTATTTTGGGATAGAAGCCTTCGTAGATTCTTTCTCGACTAACA
AGGTCTGATAACAACCCTACCTTTTATTCAAGCTAATTCGTCTTCCTCAT
GATGGAGGCTCAGGTCATAAATAGATAAATAGATATACCACTGTGTCAGG
AACCGTCTTAAGCATCTGGGGTTTATAGTTTTTTATTTTTTAGGTCGTGA
GAACTCAGAACACACTACAATAATATTATCGACCGCCGGAGGCGGTTTCT
TTCATAGTGGTACGCTAATCTCGTTTTGCTTTGGCTCATTACTTTGTCTA
CCATTTACTTTCGTTTTTTTTAACTAGATTACCCAGGTGTTTCTCTTTTT
TTTCCCTGAATGTCTTATATTCGGAATTGAATAATCGAGANNGATGACAT
GTTTATCTGGTACATGACATGTAAGCGTTAATAATGTGCGCGCGCTCTTT
CGCGAGCGTGATGCGCGATTGCGTGATGGAAGGCGGTCGTTTCAGTGTGG
TTTACATCCACACTGAGACCTAGTTAATTTCGCATAGCGAAAGTACTACG
ATAGCCTTTCGCGGCGGTGTAATAAAAAAATTAGAAACGAAAGTTCTTGC
TTGATACGGTGGACGAACTCACTAAAATCAATTTACAAATTACACGTTCG
TATAACCACGGACGATTTTCGCAGGTTTTTTTGGATTACGTCATTTATCT
TTGTGTCTTTAGCTTCACAGTTTTGATTTTTTCTTTATTTTCTTATAAGC
ATATACTTTATAAGAATCAAATCAATAACTCTTGATAGACGGTGATATAC
TTTTCGGTAATTGTTCTTACAAAGTAAACAAGGGATGGCGTACAATATGA
GCATATTTATTTTTCTTATAAGCATTTACTTTATAAGAATCAAATCAATA
ACTCTTGATAGACGGTGATATACCTTTCGATAATTAGTTCTTACAAAGTA
AACAAGGGATGGTGCACAATATGAGCATATTTATTTTTCTTATAAGCCAA
TACTTTATTAGAATCAAATCAATAACTCTTGATATACGGTGATATACCTT
TTGGTAATTAGTTCTTACAAAGTAAACAACGGATGGCGTGCAATATGAGC
ATATATATTTTTTATAAGCATATAAGAATTCTTAGAAATTAAACAACAAC
AATTGTTCTTAAATTAGTCTTATTTTTTTGGCGATTTTAAGCCTTGTTGT
TCTTGAAAAATTGTTTCATCAAGGCTCGATGTAAAGTAGATTTCAGATTA
GCTTCAATCTCTATTTCTTGTTTTTTCCCATGCAGTTCAAATTCTAGGCG
AAATTTTCGACTTTAAGTCGTCTTTTTTCTTTTCAGACTTCCATCAAAAG
ACAAGCAGAAGATGAAGGCGAGAGTTTCGATGACAAATTCGTCAAAAAAC
TTGCAGCAAATCTTATCAGACAAGATCTAAGAAATACTTTACATGTTCAA
AAAGCTGTATCAAACCTTGGCGCCAAAAGATCCCCAATGGGGAGTTTATT
AGTGAATTCAGATATTCCTGACCAATTCATACAACAACCAGTGTCTACTG
TTGGTGAAAAGAGATCATCACGTTATGAGAAATTGATGTTGCCAACGCCT
CAAAGAGCTGCCAAAAGAAGGAAAACAAACAACATGTCAAGATTCTCCAA
TAATACCGACGGAATCTTAAATGTTTTGAATTCAGTTCGATCAATGGATA
ACGAGTTAGTGGACAAGGGAATCTCATCGCTGGCAGACCCAACCGGTGCA
TATGATGAAAAAGCAAATGCAATGAGAAAACTACTTCAACCAGAAACAGA
TAGTAAGAATCAGAACGATGCAAAGGATAAATCATTCATAGTGGTGCTAC
CCGATACAGAGGGTGGGAAACCGAAAGAGTACCTGATCAAAGATTCTTTA
TCATCATCAAAACAAAAGAAATCTACCCTCAACTCAACACTTCATCAAGA
TGCCAGCCGAAAAGATACCAAACCAATTCCTCCACAAGGCACTCACAATC
TGGTCACTAACCAAACAAAAGTGAAGAATGCACCATCAGATCAAACACCA
CTAACATTGGCAGATACAAACGTTCCAGTACCTATTGATTACCATTACCA
AAGTCACCAAAACATTACTGCAAAACCACAAAATGCCAATGCTAGCAGCT
CCAACAGCAATCATATCACCAGTGCAACAACTAACAGCTCCTCGTTTCAA
AAAACCATTTCTTCATCGCCACTAAATGACACAAAGCAACAGCAACACAG
AGAAAAAAATTCAACAACTGTAGCACCCCAAATACTTCCTCAAGGAGAAA
TAAATCACAACAACTCCAGCAATTCTACCGTAAGAAAGATTGATCAACAA
CCATCGAATTTGAATTCACAACTAATATTGAAACAAAGTAAAGAACGAGT
CATGAGCTACATGAAAACACTAAAAAACGCTAAACAACAAACGCATCTAT
TAAAACCAATGGATTATGTTTTGGATAAAAAGCAAATGCTTTTTCATTGA
ACTTGGGAGAATCAGTCTTTTTTTGCCCGTCATTAACAAAATATTTCATA
TGCAATGATATCTTATGCTTTTAATTTTAAGTCTTTGACTCTATATCCCT
GTATCACTGTTCCTGACTCAAAGACTTTCCAACCTTTGAATCTAAATTAT
CTTGAAAAAACTCTAGTTGGTAAGAAGTGCTACTATATAGACTGGATATT
CGAGCCGTGAACCAATTTGATATTTTTATGGTTACGATTTACAGAGAATT
CATCTTATGAATATCTTTCCAACAGTGTATAACTTTTAAATATAGCCAAA
GAAGCGCTTTTTCTATAGACCTTATTGGAGTTTTTGATTTTTCTAAAAAA
GCGATGCATTGTGGGATTGTTTCGAGTGTATTACAATAGAAATCTCTTA Coding sequence (CDS) from alignment at scaffold_47:309814..313462- >TCONS_00067489 ID=TCONS_00067489|Name=TCONS_00067489|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_47:309814..313462- (Clytia hemisphaerica)
ACTTCCATCAAAAGACAAGCAGAAGATGAAGGCGAGAGTTTCGATGACAA
ATTCGTCAAAAAACTTGCAGCAAATCTTATCAGACAAGATCTAAGAAATA
CTTTACATGTTCAAAAAGCTGTATCAAACCTTGGCGCCAAAAGATCCCCA
ATGGGGAGTTTATTAGTGAATTCAGATATTCCTGACCAATTCATACAACA
ACCAGTGTCTACTGTTGGTGAAAAGAGATCATCACGTTATGAGAAATTGA
TGTTGCCAACGCCTCAAAGAGCTGCCAAAAGAAGGAAAACAAACAACATG
TCAAGATTCTCCAATAATACCGACGGAATCTTAAATGTTTTGAATTCAGT
TCGATCAATGGATAACGAGTTAGTGGACAAGGGAATCTCATCGCTGGCAG
ACCCAACCGGTGCATATGATGAAAAAGCAAATGCAATGAGAAAACTACTT
CAACCAGAAACAGATAGTAAGAATCAGAACGATGCAAAGGATAAATCATT
CATAGTGGTGCTACCCGATACAGAGGGTGGGAAACCGAAAGAGTACCTGA
TCAAAGATTCTTTATCATCATCAAAACAAAAGAAATCTACCCTCAACTCA
ACACTTCATCAAGATGCCAGCCGAAAAGATACCAAACCAATTCCTCCACA
AGGCACTCACAATCTGGTCACTAACCAAACAAAAGTGAAGAATGCACCAT
CAGATCAAACACCACTAACATTGGCAGATACAAACGTTCCAGTACCTATT
GATTACCATTACCAAAGTCACCAAAACATTACTGCAAAACCACAAAATGC
CAATGCTAGCAGCTCCAACAGCAATCATATCACCAGTGCAACAACTAACA
GCTCCTCGTTTCAAAAAACCATTTCTTCATCGCCACTAAATGACACAAAG
CAACAGCAACACAGAGAAAAAAATTCAACAACTGTAGCACCCCAAATACT
TCCTCAAGGAGAAATAAATCACAACAACTCCAGCAATTCTACCGTAAGAA
AGATTGATCAACAACCATCGAATTTGAATTCACAACTAATATTGAAACAA
AGTAAAGAACGAGTCATGAGCTACATGAAAACACTAAAAAACGCTAAACA
ACAAACGCATCTATTAAAACCAATGGATTATGTTTTGGATAAAAAGCAAA
TGCTTTTTCATTGAATGAAAATATTTTTGCTTCTCTTTTTTTTCTTCTAC
TATGTCATTCTAGAGATCTTTGCATTGGACAATGGTAACAAGTACAAAGT
ACTGACCATCACTATCAAGAAGGAAAATGAGAGACAAAACCATACGATGG
ACGAGCAAACAGAACAAAGAAGCCTTGCAAAGACTTCCATCAAAAGACAA
GCAGAAGATGAAGGCGAGAGTTTCGATGACAAATTCGTCAAAAAACTTGC
AGCAAATCTTATCAGACAAGATCTAAGAAATACTTTACATGTTCAAAAAG
CTGTATCAAACCTTGGCGCCAAAAGATCCCCAATGGGGAGTTTATTAGTG
AATTCAGATATTCCTGACCAATTCATACAACAACCAGTGTCTACTGTTGG
TGAAAAGAGATCATCACGTTATGAGAAATTGATGTTGCCAACGCCTCAAA
GAGCTGCCAAAAGAAGGAAAACAAACAACATGTCAAGATTCTCCAATAAT
ACCGACGGAATCTTAAATGTTTTGAATTCAGTTCGATCAATGGATAACGA
GTTAGTGGACAAGGGAATCTCATCGCTGGCAGACCCAACCGGTGCATATG
ATGAAAAAGCAAATGCAATGAGAAAACTACTTCAACCAGAAACAGATAGT
AAGAATCAGAACGATGCAAAGGATAAATCATTCATAGTGGTGCTACCCGA
TACAGAGGGTGGGAAACCGAAAGAGTACCTGATCAAAGATTCTTTATCAT
CATCAAAACAAAAGAAATCTACCCTCAACTCAACACTTCATCAAGATGCC
AGCCGAAAAGATACCAAACCAATTCCTCCACAAGGCACTCACAATCTGGT
CACTAACCAAACAAAAGTGAAGAATGCACCATCAGATCAAACACCACTAA
CATTGGCAGATACAAACGTTCCAGTACCTATTGATTACCATTACCAAAGT
CACCAAAACATTACTGCAAAACCACAAAATGCCAATGCTAGCAGCTCCAA
CAGCAATCATATCACCAGTGCAACAACTAACAGCTCCTCGTTTCAAAAAA
CCATTTCTTCATCGCCACTAAATGACACAAAGCAACAGCAACACAGAGAA
AAAAATTCAACAACTGTAGCACCCCAAATACTTCCTCAAGGAGAAATAAA
TCACAACAACTCCAGCAATTCTACCGTAAGAAAGATTGATCAACAACCAT
CGAATTTGAATTCACAACTAATATTGAAACAAAGTAAAGAACGAGTCATG
AGCTACATGAAAACACTAAAAAACGCTAAACAACAAACGCATCTATTAAA
ACCAATGGATTATGTTTTGGATAAAAAGCAAATGCTTTTTCATTGAATGA
AAATATTTTTGCTTCTCTTTTTTTTCTTCTACTATGTCATTCTAGAGATC
TTTGCATTGGACAATGGTAACAAGTACAAAGTACTGACCATCACTATCAA
GAAGGAAAATGAGAGACAAAACCATACGATGGACGAGCAAACAGAACAAA
GAAGCCTTGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067489-exon-scaffold_47-1575043694:312764..313462 | TCONS_00067489-exon-scaffold_47-1575043694:312764..313462 | Clytia hemisphaerica | exon |
| TCONS_00067489-exon-scaffold_47-1575043694:309814..311376 | TCONS_00067489-exon-scaffold_47-1575043694:309814..311376 | Clytia hemisphaerica | exon |
| TCONS_00067489-exon-scaffold_47-1510915933:312764..313462 | TCONS_00067489-exon-scaffold_47-1510915933:312764..313462 | Clytia hemisphaerica | exon |
| TCONS_00067489-exon-scaffold_47-1510915933:309814..311376 | TCONS_00067489-exon-scaffold_47-1510915933:309814..311376 | Clytia hemisphaerica | exon |
| TCONS_00067489-exon-scaffold_47-1491911889:312764..313462 | TCONS_00067489-exon-scaffold_47-1491911889:312764..313462 | Clytia hemisphaerica | exon |
| TCONS_00067489-exon-scaffold_47-1491911889:309814..311376 | TCONS_00067489-exon-scaffold_47-1491911889:309814..311376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_47 | supercontig | scaffold_47:309814..313462 - |
Blast
The following BLAST results are available for this feature:
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