TCONS_00067474 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067474
Unique Name	TCONS_00067474
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1849

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_47:228291..245805-

transcript sequence

>TCONS_00067474 ID=TCONS_00067474|Name=TCONS_00067474|organism=Clytia hemisphaerica|type=transcript|length=1849bp
CGAAAAACAAGTCTTCATTTAAGAATGTGATTTGTGACGGACAATCAATG
AGAGGAAACTGCAGGTTAGACCAgtgaaggagaagaagaagaggaaattt
tgctttttttgtgggcgagagaagaaaaatcATCAGAGGGAGAATGGCTG
TGTTGTTGGTGACTCGAGCGAATTCTGCCAGTGGTGGACGTTCTCCTGAA
CACGAGGGAATGATCGGTTTGCCACGGAAGTTTCCGTCACCAGAGAAAGA
TGAAGATCTAGATGACGAAGAAGAAGCGTCTTGTGAAGAACTCGTTGTCA
CTGGTATCCCTTTCGCCAGTCACAAACATGCTGTCGGCTCATTGAATCCA
GCTTTGGGAAACATCGAAGTTCGACGCTGTAACTTTGTCATCAACCACGA
GGGACGCTTCAAAGTGTTATGGGATTGGATCGTCTTAGTGTTGGTCATCT
TTACCGCTATCCAGATTCCATACTATGCTGCATTCTCTAATAATGTCAAC
AACATTGTCCTTGATGTAGTTAAGAACAATGAAGTCCGACCCATGTTGAT
TCTCAGCTTAATCGTGGACTGTATGTTCGTGTTGGACATCTTCCTAAATT
TCCGAACCACCTACATTCAATCAAGTTCGGACGTGTTGGAGAAGAACCCT
AAGAAATTAGCCATACATTACCTGAGAACATGGTTTATAATTGATCTACT
GGCGGCCATTCCGTTCGACTGGATCATGCATCAAAGAAGTTATGGTGGAA
ATACATCAACATTGGTGGGTTTACTAAAAAGCGCACGTTTGTTGCGTTTA
TTCCGCGTCGCTAGAAGACTGGATCGATATTCGGAGTATGGTTTAGCTGT
CCTTTTTCTTTTGATGTGTTTGTTTACACTGATCGCTCATTGGTTAGCTT
GTATTTGGAACGGAATCTCTTTAATCGAGGAAGGCAACCAAAACAGTTGG
GTTCATCGTATGGATGATATCTTATACCCTAAGAACGTTACAAGGTTGCT
AACCAACAATACCCTCAACGGTACTTTGAGCAGATTATCCATTAATGTGA
TAAGGATGACGCAATCACAGCGTTACATTGCGTCCATGTATTACATTGTA
TCTTCATTGACCAGTGTAGGGTTTGGCAACATTGCAGCAACTACTGAATT
GGAACAGATGTTTAGCATCATTACAATGTTACTTGGAGCGCTTATGTACG
CATGTATTTTTGGTAACATGGTAGCAATCGTTCAGCGTTTATATTCGAAA
GCATCCACCTTTCACACGCAAATGAACACAATACGAGAGTTcatgaaatt
ttacaaaataccCGAGGAATTACGACAATCTATCAATAATTACGTGCGAA
GAGAATGGGCCGTCACGCAAGGCATTGATGCCGAAACGGTATTATCAAGA
TTCCCAGAATGTATCCAAGCAGATTTGACGTACGAACTCTATCAAAACAC
ATTTCACAGCGTCAAGCCGTTTCGTGAAGCAACCGTCAGCTGCAtgagag
ctatggccatgaagtTTAAAACGATGACATTACAGGCTGGTAATTTTGTG
GTTCGCCAGGGTGAAGAAATAAATCGGTTGTATATTGTCGGTAAAGGATC
ATTGGAAGTTTTACATGAAGGAAATCTCATCTTATATTTGACACGGAATT
CAACATTCGGTTACGATTTCAAACTATGTCACCACAAGCCGAAAGCGAAA
GCCAATATACGTGCGGCAAACTTGGTGGAAATTCATTACATACACGTGAC
AGACTTTCTGGAAATCATGGAATGTTATCCAAAGTTTTTCGAACAATTTA
AAGAGAATTATAAACACACATATGATGTCAATGATCCAAATGAGGTGAG

Run BLAST on NCBI

transcript from alignment at scaffold_47:228291..245805-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067474 ID=TCONS_00067474|Name=TCONS_00067474|organism=Clytia hemisphaerica|type=transcript|length=17515bp|location=Sequence derived from alignment at scaffold_47:228291..245805- (Clytia hemisphaerica)
CGAAAAACAAGTCTTCATTTAAGGTGAGATAGAAACCTTTTAAGGAGCTT
CTCAAGTCTTTGTTATAAATCCCATTCCAGATAGTTATCTTCTAAATCGA
CGATTCTTTATAAGAACAATCTTTATAATAATCAGCCCAAATATCAATTT
GGGAGAGTTAGCTCTTGTCTACGTTATCATGATAGGGAGCAGATCTTTAA
CACTCTAAAAATTTAGAAGCACTTCACAAAGAAGAACCTATGACACAAAA
TCTCTATTCTTTCAAACTTTTGATTATTGATTATTTTGATGATTGGGTTT
TACGGTACTGTGTCTTCAAGAGTCACAGGTTGAAAGAAGGTTCAAAGAAG
GAAGCAAAACTTTTTCAAATTGTTTTCGTTCAATCTGGCCTGAATCTTTG
ATGTCGTCTCCAAAGGAAGTGGCGTATTCTTCTTCCTTCAGAGAAGAGAG
ATTTTATTTTACGCAACATTTATTTTTAACCAATTGAAAAGAGTATATTA
GTATAATACGTGATTTCTTAAGATTTGTTCCTAATTCTAATAGATGAAAA
ATAAAAAAACAGTCTAGAATTCGAAAATTTCTTCACTCAGTGCAAACAAG
CTTACCAATAGTTCTTCCGATCATACAAGCAAACAGAATTCGCGACTGCG
CAAAACGCGATATGCAAACGAAGAAAAGGAAAACAAATTTCTTAAGTTCT
AAGTGAGATCAGAAAAAAGTCTGACATGGATGGAGATTTCAGACACCAAA
CGGCGACTTTATTGCTTTGAAGTTTCTCTTGGGAATAAGTAGCAGACTTC
TTCACGATTGCATAAGAATTTGATTTGGACTTTTTGAAATGACACCCGAT
ATTGTTTCAGTGTCTATCTAACGTCCATCTAACGTCCATCTAGCGTTAAA
ACATCTAAAGTGCGCCCACTGGGAACTGCTGGCAAAGCTTCGTTCTACAT
ATTTTCAATGTTGGCTTTGCCGAGACTAGTTTTTATATGTTTAAAGAGAA
TTTTCAATGACGGCCTTACTAACGCAACTTCATTAGAGATGAGGAAGTTT
AAATTTGTTCTTATTTAGGAACCATTTGCTCTGATAACTCAATTGGTCTA
TCTCTATTGAATGATCGATAGTGAAAGATTTCCATAGCTTTATAGGATTG
ACCAAGGTGAAGTAAAGTTAATGAAAGCAGTAAAAGATTTTAAAACAAAT
AAAATAAAAAAATAAAATAAAATTTCGATGATCAATTTCATTTTCTTAAA
TATNGAAAGCAGTAAAAGATTTTAAAACAAATAAAATAAAAAAATGGTAA
AATAAAATTTCGATGATCAATTCCATTTTCTTAAATATAAAATAAGAAAC
GCACCCTCCGTTCGTCATTACACTGACACCCTAGGTGGAAACTCTTAGAA
ATAATTTAGTCAACTTTTTCTTTATTGTCAAAAGGAAGAATATCCTGATT
TTCTTTTTCCAGTTACCTTTTCCTCCATGAAAAACACCCTTTTTATATGT
AAAGCATTTGAATTAGATAATGTCCTCATATTTTCTTATCGTTATAGAAT
GTGATTTGTGACGGACAATCAATGAGAGGAAACTGCAGGTTAGACCAGTG
AAGGAGAAGAAGAAGAGGAAATTTTGCTTTTTTTGTGGGCGAGAGAAGAA
AAATCATCAGAGGGAGAATGGCTGTGTTGTTGGTGACTCGAGCGAATTCT
GCCAGTGGTGGACGTTCTCCTGAACACGAGGTACTTTCTATTTGTTTACA
CTGATACAATCTCAAAATGTTTGCGTCCTTCATAAATGAGGAAAGTCCGT
TACTGGAACGTCGAAATGTAAGTGCATGTTTTTTTTTCATGCTTATTTTT
CTCATGTCTGAGTATAGAGACACCCGTCTTACAGCCCCCGTGGGCTTTTT
TCCTCAGTGGGGATAAAATCTCCTATCGAAATCCCAATGGGGATAGCAAT
TCTATTGTTCCAGGGTTAAAAAATCCAGTGGGGATGGTTTTGGAATGTAA
TTTTCAAACTTTGAATTTCTAACGGGGGTGAAATCAAAATCGATATCCCA
TTGGGACCGAAATTTCAGGGTATTTTCCCTCCCGGGACGAAATTTCTGCC
AAATTTCCCAGCGGGTCTGTGACAGAGGGGTGTATATAGAGGGTCTAATT
CAGGTGTCCAATACAAAATGAATACTCACAATTCTATGTGGATGAGCCCA
TTTCTAGAGGCTGTAGCTTTTCTATTAATCCTCGAACTGTCAAAAATGAG
TTTCTAGCACTGATGAAAGTAGCTAAAAATTAACAAAGTCAATGGGTCTA
GTTATTATTTAGTTATTTTCATAAGTGAAAAATCTAAGGTTTCAAAAGAG
AAAAAAATCTTTTGAATTAAGATTTGTGCTTGCCCAGTAGGGTGAGGCCC
TCAGATAGACACTGTTTGTTCAGGCATGTTTTCAGCCATAAAGATTTTGT
TATCGATCACGCTGAAGGAATTTTTAATTTCAAACTCTTGAAAATCTTTA
TTCAAATGTTCAATGTTTTGCACCTCCGGGAAAAAAACTGAATCATTTAT
GAAACGTGAATTTATTTGGAAAATCAGATTCATGTTTTAATCAATGTACT
GAATCGACCACCAAATGTGGCTCGTTATTTCTAAAGTTCCGATCGATTTA
GTTTATCAAGAAGTGACGAAATATTATTATCGTGCAATGAATTTTCGGTG
CTTTCATATTTTGTTACATTGTTTTCGTTTTGTGTTGCTTTCTTTCGATG
AAAATGCGGTATCTGGTTCATTCCCTTGCTCAAAATGTAAGTCACTTTTT
CTACCCGTACATCTCACAGGAAAAAATTTTCGATTTCCAAGGTTGGAAAA
TCAATCAATATTTTTGGGTTGGAAATTTTGGTTTTTTAATTGAAGGTTGG
AAATTTGAGCGATTACCTTAAGCTGATTTGGAAAATGTAAATTACCCATA
GGTTTTGTAGAATAAATGCCCTTGAAAATCAAGTTAAAAAAAACCATGTA
GAAATGACAATTTTCCAAGGCTGGTTGGAAAACATGACTTTTTGGGTGGG
AAATTTTATTTTCCAAAAACAGTTTGGGAATTGAAAAAAAAAGGTCAAAA
ATCGATGTGAAAATACATATTTGTATATTTGATACCTCAAGTTGAAAAAC
TAGACTTTTTGGGTCGGAAATTTGTGTTTCTCCCAAACAGTTTGGAAAAC
GTTAAAAATCCATGTGGAAATTACATTTTTCTAAGATTGAGTCCCTTTCT
TGGAAAACTAGACTTTTTGGGTCGGAAATTTGTGTTTCTCCAAACAGTTT
GGAAAACGTTAAAAATCCATGTGGAAATTACATTTTTCTAAGATTGAGTC
CCTTTCTTGGAAAACTAGACTTTTTGGGTTGGAAATTTGTGTTTCTCCAA
ACAGTTTGGAAAACGTTAAAAATCCATGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGTTAAAAA
TCCATGTGGAAATTACATTTTTGTGAAATTGAAACTCTTTCGATTGGAAA
ACTAGACTTTTTGGGTTGGAAATTTGTGTTTTTCCAAACTTTTTTCTAAC
CATTTTCTGCGCATGTTTTTGGGAAAACCACAAGCGATTTTTCGCTCAAA
ACTGTTTTGATGTATAGCTAACCTAAATATTAGGCTATGTGAGCAGTCAA
GCTGTAAGTTTCCGTCAGGTGAGGCGTCTCTTCGGAGCGGCCTCGGTCAA
TCCCAGTGAGTTCGCACAGTGAAGCACATAGGGTACTTGTGTCATAGTTT
CAAATAGTACCCTGCTGAGCTGTGTGAGTGATCTAAGATCAACCACGTAT
CTGTGCGAACAATAACGAGAGATTGACCGGGAGCCATCGAGCCTAGGCTA
GCGAGTGACTGTTCACAAAAACAAAGACCTTGTTTAAGATCTCTGCCATC
ACTTTTTGGATTTTGGCTTTTTTCAACCTGATATTTTCGAAATTTCCAAC
CTTGTTTAGCTTGGATTTTGGCTTTTTTCCAACTGAATTTACAAAAATTC
CAACCTTGTATTTCGGTTTTTTTCAACCTAGATTTTCTAAAATTCCAACC
TTGTTTAAGCTTGGATTTTGGCTTTTTTCCAACTGAATTTTAAAAAATTC
CAACCTTGTTAAATTTAAATTTTGGCTTTTTTCAACCTGGATTTACGAAA
ATTCCAACCTTGTTAAATTTGGATTTTTGCTTTTTTCAACCTGGATTTGC
GAAAATTCCAAGCCATGGAAAATGCAAAATTTCCAACCTTGGAGAATGTC
CCACATTTTCAGGTTGGATTTTCCATTGGATTTTATCTTTTCTCCAACTA
AGAAAACTTGAAATTTCCAACCTTGGAAATCGAAAATTTTTTCCTGTGTC
TTGCACTTGAAACCAAGATAAATCGAAAACAAAATCGCTGTTCAACTCAT
GTTATCACGACATTTAACTTCTTTAACTCATACTATTGCAACATCCAGTA
ATCCAAAACCATTTTTACAATGACACTGAAGCCAACCATATTACAATCAT
ATCAAATTCATTATAACCATCTACCCTTATTGGGGCCCCTTATTACTTAC
TCGCAAAATTTTAATAATTTTGCAATGGGAAGTACCACCAAGGCACCAAA
ACTCTTCCTCCAATGCCTGCTCATTCAAATTATCGGAAAGACTTATAATC
TCAGATAGATTGTTTAAATGATAACTGTCAAACCCTGTTAAGTCTCTTTC
ATTGGAACAGTTCCACCTAATTTNCATTCAAATTATCGGAATAACTTATA
ATCTCAGATAGATTGTTTAAATGATAACTGTCAATAGATAGAAATAATTG
CTGTGTTAACAATATTTCTTATGCAGGAGATTTGTACCCATTAATAATAT
TTGGTTTTATTGTAACACTGGTCCCAGTAATCGTTTCTTTTATATTGGAC
CAATAAGAGTCTACTTCGTCGTGTTTTTATGTTTTGAAGGAGAAACACAA
TATTTTTGCAGAATTGTTAGACCCCCTAGGCTGATTTTCAAAACCATTTT
TCCGGCTAGTTTATTATAAGGGTTGAATGGACTATATTTTTGAAAATATA
ACAAAAATATGTCTTTTTTATGTGATAATATTTTTGGATTTCTTTCTTGT
GAGAACAGTACGTCTATTATAGTATTGGAGCTGCACCGTATGGTAGATAT
GTTATGTTTTTGAAAGAAAATCTAAACAGGTTCTTTCAGCTTGGGATAAT
AAACTGAAGATCTATCTCATCCACAGTTCTTCAATTCTTTTATGAGGACT
GATGAAGTGTCACTGTTGTTACCTGTGAAGCAACCAAGCGATTATTTATT
TCGACTCTCTCTTTTTTATTTAGTCCTAATTTTTTTCATGACTTTCTTGT
GAGTTAAGAAGAATTCTTTATTTCACCAGTGGAAACTCGCAAAACATAGA
AAATTGAGACGATTTAAAGTGAAAATAGTTTTGGTTGTCTACCTTGCTAA
ACGATAATCTTTAAGTCCTGAACGCTTAAAACCGGTTTTCGATTACAAGA
AGAAAAGAGGAGAGTAAAAAGATATTAACCTTTTGATAAGAGTTGGGATT
AGATGTTGGATTTAACTTTCAAAACGATGATTCTATTCATGTAAACTCCT
CAACTGATCGAAGAAGGAATAACCATCCTGTTCTTTTGATACGTAGATCT
TCTCAATATATTCTTTTCAATAAAGATCGATAGTAGACAATTTTTCAGGG
CATTTTATTTGGAATAAGAATTATTCAATAAATTTGTTACAAACGCTTAT
AAGTATTTAAATACTTTGGATTTCACAATCATCGACAACGTCGGACACAG
GGTATTAATCGAGATGGGACAAAATACTTCTTTTTTACCAGTCGAAGATG
TGGATCAAGAGGATGCGTGCTTGGCGCCCGAAATTGCAAAGGTAAAAAAC
TGATAGGATTTATATTTATGTATTTTGCACACTGACTCCAATCATAGTCA
ACTACTCCCACAAACGCTACCATCATCTTCTGCCACCAAAGTCACCAACA
ATGGATGAGGATCAACCCAGTGATGTATCATCCATTGACATAACATCGAC
CCCACCAAAATGTACAGCTGCAAATTGCTTCGTTCAAGACGCTGATTCTA
TGATTTGATACAACTTTACACTTAACCCCGGGGGGGGGGGGTACTAGGGT
TGCGAGCTGACGGGGGGCACTTAACATTTGAGATAAATGTCACAAGAACT
TAAAATGTTTAAAGGAACCGATTCAGTTGTCAGGCTTTGTCTATCCATCT
ATTAAACGAATCTTGAATCAAAATACCTGTAAGCTTTTGACTATACTCGG
AATACTGAGACTGAGACTTTCTCCTAAATCTTGAGCACAATACGTAATAG
ACTCATTATTTATTAGTTTTTACGCGAATTTGAAAACGTATTAGCGCTTT
AATTTGATATGTTTTGATATGAGATTTCCTGGAATAGAATGAAGTTGAGG
AAGGAAACAATCTTTCAAAAACTTTTTTCTTAACTTTTTTTATTGTAANC
TGGAATAGAATGAAGTTGAGGAAGGAAACAATCTTTCAAAAACTTTTTTT
ATTGTAAATGAAGCCAAATACATTGTCTTTGGGAATAAAATCTATTGAAG
AAGTTCGAAGACAAAATATAATCCCGTTTGAATAGAAAGATAAGTTAAAG
AGTTTTGTTACGTTACACTTTTTTTCGGACGTTGAACTTTCAAAGCTTCT
TTTAGTTCTGTTAGTTTCCGACAACTCCATGTTTGTCCAATAAAATGTGG
TCGTTTCCAAAGGTAACGATGATGCTGTAATGCAAATAGTAGTCGAAAAA
CAATTTCTCAATAATTTGGTATCATTAATCATACAAAAGATAATATGGAA
GACTTTGATATAATATTTTTCGATAGTTTATCGCTTACGTTAAGTGGCTG
TAGTCTGTAATAGAGTATATTATCTTATGGTGAGTATATTTGATAGGCAC
TTTAGAACTAGGTACAGTAGTCTACCAATGTGGAGATTTAGTTCTTATTT
TACAAGGTTTTAATAACGCTCAAAGAGTACCCTTTTTGACGTCTTTTCGG
AATTTTTCAATCAGCTTTAATTCTACTGAACCAAATTCAAAAAGTTACGC
AGCAAATTTTAAGTTTAACTTTTCTCCTTTTTAATGAAATCATAAAAGAG
AAATTTCGTAAAAATTCATATTATTACTGACACAGTAGCAATCAAACTCT
TATACGATTTCATTGGTCACCTGGTAAAAAACCTTACGGCGCTTGATACA
AGATAGTGTCCACATCAAGGTAATGTACCTTACTGACAGTAAGAGTAGTA
AGAAAACTTTGGGAACTTAACTGGTGAAGAATGAGGGTTTGTTTGCTTAC
GATAGCAGATTGAAAAGGGTAATCTGACCCACCTCTCAGAGACGCCTTCT
TAAGTGATTTCATTCCCCAATTTTCTAAAAAAGTGGGATAAATTATAAAA
AGAGTGAGGTGAAACAGTTTGAATGACAAAAAAGCACTTCCCTTACTAAC
ACTTTTTGTTAATCTCAATTTGCAATCGGATTGAGCTTTGATTTTTCGTC
CCTAAAGCACACACAGGGAGAAGGACAGCCCTCTGATTCACTCCTCCTTG
GGCGACACCTGCTTCTTATACTTTCTTGATATGATATAACGTGTTGAGAA
ACCTTCATTATTTTTCTGATGGAAAGAAAAACTGAAGTTGATGTCTTTTT
GATGACGTGCTTTTCAAATTTTCTTTCGCGATCAACTGCATATGGTCATG
TTCCCTTCAAGTTGCTTTGAAATTTTCTGTTTGGAATGAACAAGAACGCC
GGAGTGTTCTATTCAAAGCAAGCGCAAGTCATGGGTATTTTATTCATCAA
AGTAAGAATATTTTAGTAATTATGGTATTCAGCTCTTGTGGGACCTTCCT
GCGGGCTTTTTTAACGCAGCATGCTAAAATCATTCACGAGGGGATTTGAA
TAAATGGACTATTCATAAAAAATTACTTTTTAATCAAAATTTTTGCATCA
TTTTTAATTCTACGCACTCAGAGTGTAACCTTAAAATTAAAATCTTTGAC
AGAAAGAAATTTTCACCAATTAACTAAATTCGCTGAAATTTCTTCGCGTT
AATTTAAAAAATTTTTGTTAGGCTAAATTGCGCGAAAATTGTTAGATAAA
TATTCATTTATTAGTGGAGGATAGAAACTAGTGCGAAGAAAATTCAAATT
TAGCTTTCGGTTTACTCATGCTTGGCATTGTCCCGCTAATTTCACTCTAT
TGTAAAAATTATTCCTACTGAAATTAAACTCGTTTTATTGAAGAAAGGAA
GCAATCTTTACGGAAAGTCTCAAAAACGGGTCAGAGAATGTGAAATTTTC
AGACAGTCTAGCATCATATGTTTATTGTCATTTATTTTTACACATTTTGA
ACTACCGGGTCAATGGAAAGGTTATTATTTTGACTGTGAGTGAGTAGAAG
GTCAACTGACGCACAACTTTATGCGTTGATACTTGACGAAAATTTTTCAT
TTCAAAACTGCAGTGTTTAGTATGATTCGCAAGGTAAGATATTTTGTTTT
TTTATCTTCTGATAATCTAAAGGGTTTGAAAAGGTATAAATTTTTCGGAT
TAACTTCCATTGATCATGTATGGATTAACACAGATGATTTGAACATTTCA
TTATTTTTTTAATGGGTGATTTTTACCGTCAACTATTTTTGGACGAACTA
TCTTACCGATTCTTTAAAATGAATTAAAAAACAAATTAAAAAACAATTCT
TTCAAGTTTAGAAGGGCTTTGAAAAGTTAATTTAGTTTTTTAACAATTTT
GCGAAGCTTTCTTTGAACTAGAAATCATAAAAGAAACTTTCTTTGGTTCT
AAGGATGTACTTAGAGAGAAAGATATGACTAATTCAAAATATCGTGGCTA
TTTTCTAATGTATTTTCCATGTGGATGAATTTTTATCCATTAAAGGGAAA
ATAGGAAGATTATTCGTTTCCATCTCACTCACTCCACAAACACAAACTTC
CTGTTCAGGACAAAAAAAGGAAAAAGTACAGTCCTGTCAAATTAGAAAAT
AGTGGTGAAAGTAGGATATCAAGCGCGGTTGGATACTTTACCGAACACTC
AAGCAGATGGAGTGTCTTGTATTTCCAAAAAAAATCACGTCTTGAAAGCG
AACCTAAACACTCCTCCTTCTTTCATTGTGCTTTCCTGGAGGTGGTTTGC
TTGACAATAGCAATAGCAAAGACTTTCGATCCAAAAAAAGAAGATTTTTT
TTCGAAGATTTTTTTCCTTTTTCTCCTTATTTCTTCGGATTATAAGTACC
ATCGTGTTTTTAATTTCTCTGTTTCCCTTGAAATAACATAAAATACTCAG
TCAAAATATCCACGCAGATTTTTTCCCTTGTACTTTTTAAAGAATTTTCT
GATGAAGCAAGAAAAAGAAGTAAAGAATCTATTTCGTCATAAAATTATTT
TGTCCCCTTTTTCGTAGATGTTTCTATAACCTTGAAACAGACTATGAGAC
CAGCAAATTCACTTGTTTAACATTGACAAACAATGTTGTCAACACTTACT
GTAAAAATCAGAGTTGTATTAGGTGGCAAAGTAGAATAGGGCAATGAAGT
GGTTTGCCGTTAAAAAAAAATCAAAAAAATGTAATTTTTTAGTATTTGTT
ATCCATTAGCCTAAACTGTAGCCTCACATATCAGTATAGTTCATGAGACA
GGAGATAGTTTTTAAGTGAATCCTAGCAGAAGGTTGGTTTGTCAGCTTGT
AAATTCACAGATCTAGATATTGTTTGACAGCCGAAACCTTTAGAAACGAT
TTTTAGTGATTCCTTTTGAAAGCTCGTTGATGTGGTAAACTACGGTCTTC
AAACTCAAGTAGAAAAAGGTGTCGGCATATATTTGACTTAAAGAAACACT
CCCTTTTTAACGTGCAAAAGACTTATGCAAAATAAATTTTAGCCTCGATA
ACCCCTTTCATTACGTCAAAATCTTTATGGAAATTTAGGACCGAAGTTTA
GGTACTTTCTTTCTATTATAATTTTAAAACTTCATTGAATTTTCAAAAGC
ATACAAAGTCATCTAAATAATAAAGATCCCAAACGAGAAAGTGTTGCTCA
AAATGAAAAAAAAACAATTTTTTCAGACTCCTCTTCGGGAGGTGCTTTTC
TGCAAACTTGGATATTTCACAGTCAGTAACAACGAATAAATAAGTTCAAA
CTCACAAGAAACGTTTGTCATAAAGATATCTGTTGAAGTCCTTCTAGTCA
AAATATTAAAACCTCGTTCAGACTCAAGAAAAGTTTAACAGATAGAAAGA
AAAATCGTATTACTAAGAAATAATCTTTTCCACAAAAGTAAAAATAACCA
AAATTTTGATACAAGCCATCTAAGCTGAAAACTAAAAATACAGTAAATAT
GTCCATCAGGGTATGACCATTAACCTAAGTCTAATTATGTAAGAAGTGAT
AGGTTAAAACAACTAGAGACAGGAGTATTTTTTGAAACAAAGTAGATACA
CATCTGTGATGGTTATCTGCTTTGCTTTTTGTGATCTTTTTCACTCTTGT
TATTGACTTTTTCAATTTTCACATTTGATGATACTTAGGCTACTTGTAGA
AAAAAGGGGAAAAGAAAAATCGAGAAAAAGGGAATGGTAGTTTTCAAGAA
TAGTGATTGTTGCTAAAGAAAAGAGATTTTTGTCAGTTTTTTTTTAAGAT
ACAAAGTTATGTAAATTTCAAACAAATTAAACACTGTAAGAGTGGTTGGA
ATGGTAGATATCTATTTTTCTAGAAACAGGTAGCGTAGTAGGTTTACCGC
CCACGCATGGAATTTTGACATTTGTATTGATTGTTTCTTGGAAGAGAAAG
AGAGCTCGGAAGCAAGATGATTCCCACAGTCACTCATGCTGCTTTCAAGG
TTTTTTTAAAATTTTTAAATGTTTTTTACGGTAAACTATTTTCCCAATGC
AAGATGCATTCTTCTTTATATTGCCCTTCTCACTTTAAAAACTTTTATTT
CACCCTTCTATCATAATGTCTTTTTTCAAAATTTTTGTCATGTACAAGAT
TCTCCCTTTTTTTGTTTCGTAAAAAGTCTTGAATAATTCACAAAGTGCAT
GGCGTTGTTGGGGCGTTGTTACAATTTTGGCTGGATCTTTATTTCTCTCT
TTGTCCAAGAGAAAGAAAACTTTTCTATAGAGAATAATGCAGTGAGGAAT
TTAAAAAGTGTTTTGAAAATTATTTATATCTGCCAATGTCAAATGAAAAG
GTGCCTTATTTTCAAATTAGATATGATTTTGACAAACTTTATAAAGTCAT
ACTGTGGTCTACGAACAGCCGTATCAATTTAGAATTTCCTAAAAGAGAAG
CATCGTTTCTACGCATTCAACTAACGAAAGAATTATGTATCGTTCTTTCC
ATTACAAAGTTAACTTTAAAAAGGTGATTTCTGTTCTAAAAAACTTCAAA
GATGGTAGCCAGATATCATGCGATAGTTTTCTCGAGAAAGAATTTTTCCT
CCCTCTTCTACGTTGTTGTTTGTTAAGATCATTAAAATCCATTTTAGATA
TTTGTTTCATAATTTTTCCCTTTTTTCTTGACTTTCGTTCTTCAGAAATT
TTCATTTTTTCATTAATTAAGTAACTTAGACCAAGTTCATTGCTTAAACA
ATCAAACCAACCATTTTCACTTTAGACGAGAGTTTCTTTTGATAAAATAG
TCGATTTTTAACTGTGTCTCGTCCCTAGTTCCCAAGAGTGAACAGTTCGG
ATCCAACACCTCTGTGTCACATACCCAATGGGACCCCAGCCCTCTGGAAA
ATTTGGCAAAAACTTCATCCCCGATGGGAAAATACGCCGGAATTTCAGCC
CCACTGGGAAAATGGCTTTGATTTTTCGAAATTCAATGTTTAAAAATTGT
ACTCCAAAACCATCCCCACTGGACTTTCTAACCTTGAACCTTTTAACCTA
GAATTTTTATCCACCACCTCAGTGGGGTTGTGAGACAGGGGTGTGATCCA
ACGCCAATCAATTTTTTTTATAAAAAGTATATTTTAAAGACCAGTGTACG
TTACATGTTTTCTTTTTATAAGCATAACGCTTATAAGCATACGAAGGCTC
AGATTTGCAAAATTCCTAAGCATAACATGAGCATATATGTCAGCCTAAAA
TATTTTTCAAGTGGTCATTTTTATCTGTTTAAAAAGGTTTGGTAGAGGTC
AAGTAAAAAATAAGACATTCCACTACTCGCTAACATTCCACTGCTCCCAA
AATCTGAACAAATTTTTACAACATTTCTGAAATTTAATTAAAAACTTGGC
TCGATGGGGTGAATCATAAGCATGATTCTTAAGCATATAATAAGCATAAA
CTATGCCTGGATGCTTTAGGAACTTAAGCATACACGAGCCTGACCAAGGG
GCATACACTTGCTTATAAAAAAAAAACCTGTATGTGGCTACAAAGTCCTT
TAAGTCTGGGAAAGTTTGGAACGTTTTGACAAAATGAATCATCTGTTTAT
TTGCGTGTTTGCAATCAAAGTTGAAAAAAAAACACAATCCAAGATTGGAA
GAAGCTTTACTCTAGTTTCCTTCTAAATCACAATTTCCTTTGTGTAAACA
TCAATACTTACATCAATACTCAAAAAAAGATTATTACGTGTTCAACAAAA
TTATTCCGTCTTCAAAGTATACAACCACCGCATCCTTTTCCTCTAACATC
TATTTTTCATCACACTTCAAAAAAGGTCACTCAGTAATTCTTTTCTTTCT
TCGTTCAACTATTTACGGTTCTTAGGTTTAAAGAATTCCTATTTCTTAAG
ATTTTTTGGCCTTTGAAAAATCAGTTAGGACCGTTATGTTGGTTGCCGTT
ATGACGGTCATACAAAGACTCAGTGTAAGTATGGTGGATAAGCTGTGTAT
GCCTTAACTTCAAATGTTGATTTCTACACTTGGCGGTTTCAGTGTAGAAC
TAACCAAAGTTTTATTTTAGGCTATACTTTAAGTTATCATATTCTGAAAA
ATATTCGTCGGCAGAAATTTGACAAGAAAATTAACGGAATCATTCGCCGA
CAAAGATCATTTTTCCGACAATTTTTACCGATAAATCAAAATAATCAAAG
CCAGATATTCATTGATGTTTTCCATGGCATTAGATTCTTGTAGGGCTGAT
TGAGGTGATATTAAATCTAAATACTACAGTGCATTCGAATAACTAGACGG
GAATGTTAGCTATATGGTTTATACAAACCAAACTTTCAATCTTCAAAATT
ATCGAACCTGATCTAATATAACGAGATTGTATTTTCACTTTTCAGGGAAT
GATCGGTTTGCCACGGAAGTTTCCGTCACCAGAGAAAGATGAAGATCTAG
ATGACGAAGAAGAAGCGTCTTGTGAAGAACTCGTTGTCACTGGTATCCCT
TTCGCCAGTCACAAACATGCTGTAAGTCATTAGTTCATGTTGCCAACAAG
GCTATATTTTTCGTGGAAACTTACCTTACAAAAACTTTCTGTCTAGATTC
TAGCTCATTAGAGATAAATCTGAACTAAGTTTTCAATCCAAAATAGATCA
TGTGAGACCCCTTACCGAAAAATCGTCTCAATTTGAAAAACTTTTTGTCA
AATTACACCTAAGTGTCATCCCTTTGTCGGGGAAGATCAAAACTTTGAGG
TCCACTGAATTTCTGACATTAACCAATAGATATCAAACTCCCCACAAGTT
AACATAACATTCTCGTCAGCGTAACTCTTTCATGGAAGTAAAAATTGACC
AACGGGTAACTGATGCAAAGGTTTTATGAATCCTTTTTCAAAGCGTATAC
CTTATCGGGGAAAAAAATGTCGGAGTTTTATTTAGTCGGGTTTTTTTTTT
CGTCGGAGAAAAATTTCGTCACCTAGAAGCATTTTCGTCACTTTCCCCCG
ATCAAAATTTCAGATTCGTCACTTTTATCCGACCAAATCTACAATTTAGT
CACTTCCACCGCTTCCACCCGACTAAATTGTCCAAATGAAATGGTTTGCT
TCACTAGCTCAAAAAAAGATCTTGTAATTCGACGTTTAAAGCACTAATTT
TGGTTGATATAGGTGTAAAAATTTATATTTTAATTTTGGTTGGTTTTTTT
TTTTAAATCGGGTAAAAGTTTTGGTCAGGGATAAAAAAGTCGGGTAAAAG
TTTTGGTCGGGTGATAAAATATCGGGGAAAAAATTCGTCGGGGGGGAATT
TCGTTACCCCCTCAAAATTTTCGTCACTTTCCCCCGACATTTTTTCCCAG
TTGAGGTGTATGGGTTTTTCTTGTATTCAGGTCGGCTCATTGAATCCAGC
TTTGGGAAACATCGAAGTTCGACGCTGTAACTTTGTCATCAACCACGAGG
GACGCTTCAAAGTGTTATGGGATTGGATCGTCTTAGTGTTGGTCATCTTT
ACCGCTATCCAGATTCCATACTATGCTGCATTCTCTAATAATGTCAACAA
CATTGTCCTTGATGTAGTTAAGAACAATGAAGTCCGACCCATGTTGATTC
TCAGCTTAATCGTGGACTGTATGTTCGTGTTGGACATCTTCCTAAATTTC
CGAACCACCTACATTCAATCAAGTTCGGACGTGTTGGAGAAGAACCCTAA
GAAATTAGCCATACATTACCTGAGAACATGGTTTATAATTGATCTACTGG
CGGCCATTCCGTTCGACTGGATCATGCATCAAAGAAGTTATGGTGGAAAT
GTGAGTATTTAAGTCTGTCATTGCGGAGAATACTGACTTTCGTATTTACT
GACTATTTTGTAGCCAAAACAGAAAGTTTTTAGCGCTACAGTATACTGTG
GCAAGTTTCCACTTTTTAGTCTGGAACATAGAACCTTTAAAACCCCCCCC
CCCGATAGCATGAGAGCACGAATTCAGAGGTTATTAATAGCCTACTTGAC
TCTATCTGTCTAGCTCGATCATTGTTCTACCTAAGAACAAAATCGTGCAC
AAAAGTACTACATGAACATGACATAATATGATTTAATATTTTTTTCTTGT
AGACATCAACATTGGTGGGTTTACTAAAAAGCGCACGTTTGTTGCGTTTA
TTCCGCGTCGCTAGAAGACTGGATCGATATTCGGAGTATGGTTTAGCTGT
CCTTTTTCTTTTGATGTGTTTGTTTACACTGATCGCTCATTGGTTAGCTT
GTATTTGGAACGGAATCTCTTTAATCGAGGAAGGCAACCAAAACAGTTGG
GTTCATCGTATGGATGATATCTTATACCCTAAGAACGTTACAAGGTTGCT
AACCAACAATACCCTCAACGGTACTTTGAGCAGATTATCCATTAATGTGA
TAAGGATGACGCAATCACAGCGTTACATTGCGTCCATGTATTACATTGTA
TCTTCATTGACCAGTGTAGGGTTTGGCAACATTGCAGCAACTACTGAATT
GGAACAGATGTTTAGCATCATTACAATGTTACTTGGAGGTTAGTTCATAT
TTCGTCTAGAATACATTCTCAAATTTTCTTCTTAATTCACACGCATTCGA
TTGATATCAACTNAATACACTCTCAAATTTTCTTCTTAATTCACACGCGT
TCGATTGATATCAACTTAGACCGATTAATGCTATTGTGAAATTCGATCGG
TTTCCACTTTATGCTCGAAAAGCCTTATGAATGTTCTGTTTGAAAATATT
TCTCTATTCCTTTTTATTCTAGCGCTTATGTACGCATGTATTTTTGGTAA
CATGGTAGCAATCGTTCAGCGTTTATATTCGAAAGCATCCACCTTTCACA
CGCAAATGAACACAATACGAGAGTTCATGAAATTTTACAAAATACCCGAG
GAATTACGACAATCTATCAATAATTACGTGCGAAGAGAATGGGCCGTCAC
GCAAGGCATTGATGCCGAAACGGTAAACTTTCTTGCTCTTGTATCACCTT
GAAAAGACGAGTTATACAGAAGCAGAAATAATTGATTTAGTGGAACTGCC
TGTTATGTTACCCTTTCATCCTTTGAAAGTTGAACAGTTCTATTTAACTG
ATTTAACTGTTGTAACTGGTAACTGACTGACTCCACTCTGATAATATAAT
CTGTTTGGTCTTTTAAGTTTCTTGTTCCTGAAATGTTGATGGGTGTTTAG
TTTAAAAAGTTGGAAATATCTCGAATCTAATGACCTTTGTAAACCCTAGA
AGTGAGCGTGGTGAGTCGACCAATATTGGAGAAAACTGAGGAGGAAATCT
TTCAGTTGTGATTTTGCCCCCCCCCCTTAAGGGAAATATCTTTGAAGAGA
TATCGCGAGTAGAGGAAGCACAAAAATGTTTGAATAATTTACTTTCTTTG
ACTGAAAACTGCTAGTTTTAGGGGTAAAAAAAGCAAAGGGGCAATCAGTG
TTGCCTTTTGGCACCCCTTGTCTTTCGATGGCCCTATACAAATCTGCGGC
TCGGCACTGTAATGGTTTTTTTAGATTTTTAGATGTCATCATACTCCATG
ATTAATGGTTAGAATTTTACATTTACACGCTATAGGTATTATCAAGATTC
CCAGAATGTATCCAAGCAGATTTGACGTACGAACTCTATCAAAACACATT
TCACAGCGTCAAGCCGTTTCGTGAAGCAACCGTCAGCTGCATGAGAGCTA
TGGCCATGAAGTTTAAAACGATGACATTACAGGCTGGTAATTTTGTGGTT
CGCCAGGGTGAAGAAATAAATCGGTTGTATATTGTCGGTAAAGGATCATT
GGAAGTTTTACATGAAGGAAATCTCATCTTATATTTGAGTAAGTTGACTC
TCGGATACTGATACATGGGAAGCTGGTTGAGTTTTCTTTTAAAATTTAAT
AACTTGGGGTAGAATATAGATACCTTTTTTAAAACAGGGCTTTTATAAAA
GAATCAGGTCAAAAGAAGGGACTTTTAAAACTGTTCCTTGATGATGCTTC
TTTATTCGCCAAACGAAAGTAAAGTGAGTACAACGAATACGAATGCTCAG
TTAAGTACTCAAGCCTTCTCTTACCATCCCTGAAATTTCTGGTCTATTTA
ACTAAGCAATCCAGTATTACTCAAGAGGATCAATTCTCTCCATCTTTCAA
ACTTTAGCACGGAATTCAACATTCGGTTACGATTTCAAACTATGTCACCA
CAAGCCGAAAGCGAAAGCCAATATACGTGCGGCAAACTTGGTGGAAATTC
ATTACATACACGTGACAGACTTTCTGGAAATCATGGAATGTTATCCAAAG
TTTTTCGAACAATTTAAAGAGAATTATAAACACACATATGATGTCAATGA
TCCAAATGAGGTGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042140	XLOC_042140	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_47	supercontig	scaffold_47:228291..245805 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221209	1.68805	0.103425	0.048918	0	0	0.00695981	3.61789e-09	0	1.88626	0.93925	1.67125	0	1.82156	0.314662	0	1.64547	0	1.70388	0	4.73147e-08	0	5.87495e-09	0	0	0.0127393	0.669513	2.72952	0	0.349184

Blast

[Close]

BLAST of TCONS_00067474 vs. Swiss-Prot (Human)
Match: KCNH2 (Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.130e-114
Identity = 209/492 (42.48%), Postives = 308/492 (62.60%), Query Frame = 3

Query:  384 FVINHEGRFKXXXXXXXXXXXXFTAIQIPYYAAFSNNVNNIVLDVVKNN-EVRPMLILSLIVDCMFVLDIFLNFRTTYIQSSSDVLEKNPKKLAIHYLRTWFIIDLLAAIPFDWIMHQRSYGGNTSTLVGLLKSAXXXXXXXXXXXXXXYSEYGLAVLFLLMCLFTLIAHWLACIWNGISLIEEGNQNS---WVHRMDDILYPKXXXXXXXXXXXXXXXSRLSINVIRMTQSQRYIASMYYIVSSLTSVGFGNIAATTELEQMFSIITMLLGALMYACIFGNMVAIVQRLYSKASTFHTQMNTIREFMKFYKIPEELRQSINNYVRREWAVTQGIDAETVLSRFPECIQADLTYELYQNTFHSVKPFREATVSCMRAMAMKFKTMTLQAGNFVVRQGEEINRLYIVGKGSLEVLHEGNLILYLTRNSTFGYDFKLCHHKPKAKANIRAANLVEIHYIHVTDFLEIMECYPKFFEQFKENYKHTYDVNDPNEV 1847
            + I H   FK +WDW++L+LVI+TA+  PY AAF            +     +P+ ++ LIVD MF++DI +NFRTTY+ ++ +V+  +P ++A+HY + WF+ID++AAIPFD ++    +G  +  L+GLLK+ARLLRL RVAR+LDRYSEYG AVLFLLMC F LIAHWLACIW  I  +E+ + +S   W+H + D +                  S L    I+     +Y+ ++Y+  SSLTSVGFGN++  T  E++FSI  ML+G+LMYA IFGN+ AI+QRLYS  + +HTQM  +REF++F++IP  LRQ +  Y +  W+ T GID   VL  FPEC+QAD+   L ++     KPFR AT  C+RA+AMKFKT     G+ +V  G+ +  LY + +GS+E+L    ++  L +N  FG    L     K+  ++RA    ++H IH  D LE+++ YP+F + F  + + T+++ D N +
Sbjct:  398 WTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLKETEEGPPATECGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANEEVV-SHPGRIAVHYFKGWFLIDMVAAIPFDLLI----FGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNMEQPHMDSRIGWLHNLGDQI------------GKPYNSSGLGGPSIK----DKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQHCKPFRGATKGCLRALAMKFKTTHAPPGDTLVHAGDLLTALYFISRGSIEILRGDVVVAILGKNDIFGEPLNLYARPGKSNGDVRALTYCDLHKIHRDDLLEVLDMYPEFSDHFWSSLEITFNLRDTNMI 868

The following BLAST results are available for this feature:

BLAST of TCONS_00067474 vs. Swiss-Prot (Human)

BLAST of TCONS_00067474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KCNH2	4.130e-114	42.48	Potassium voltage-gated channel subfamily H member...	[more]

You are here

TCONS_00067474 (transcript) - C. hemisphaerica