TCONS_00067413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067413
Unique NameTCONS_00067413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067413 ID=TCONS_00067413|Name=TCONS_00067413|organism=Clytia hemisphaerica|type=transcript|length=769bp
AAGTCATTTTCATGAGGGGGTTAGCCTCAATGACCTGGCTATGGCAAAAG
GATTTTCAGATTTGTTAAAAAAGGTGGGATTTGGGTTAATGAGAAATTTC
AGGTGGAGATAACCCCTATGTAGGCAGGTGTTAAATTTTTCAGGCGAAGG
TTCGTTGTCAAAGTTTCTGAATTTATTCTGtcattttcaatcatttttgc
aCAAACTAgagaataataaaaaaacatttttgtactGATGGCGTAGCCGA
AAAGCTTTTACTATGattatgaaataaattttgaaaaaacgtaatccatt
ttgaaagttttgtttttctctagTCTCTTTCTCTCCAGTTTGAAGTATTA
GGGACTTATGACCACAATTTAGGTATGGATTGTTGAATAAGGTGGGGGTT
GGGCTGATAACAGATTTCAGGTGGAGgtgacctttttcaggtgggggttg
gaggggtgttgcCCATTGTGATTCTACTAAACATATACTTAGGTATTGAG
AATAATCATCTGTTAGATAGTTGGCCTCTTAGCTGCGCTGAGCACTGACA
CAGAAGAAATTCATGACATTTATGAAGAGGGAATCATGTCTCATATTTTA
TTGACTCTTCTTTCTCCCTGTTTACGTAGTACCAGTTTTTAGTCTTTTGT
TATGGTTAATATTGCATACTATGATTGCATTACTTTTTACCTTGGGTGTA
CGGATTTTTGGGTGTACTGTATTTAATTTGGGGGTTGACAGATGCACTCT
ATCACATTTGCTTCTCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_469:158867..159635

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067413 ID=TCONS_00067413|Name=TCONS_00067413|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at scaffold_469:158867..159635 (Clytia hemisphaerica)
CAAGAGAAGCAAATGTGATAGAGTGCATCTGTCAACCCCCAAATTAAATA
CAGTACACCCAAAAATCCGTACACCCAAGGTAAAAAGTAATGCAATCATA
GTATGCAATATTAACCATAACAAAAGACTAAAAACTGGTACTACGTAAAC
AGGGAGAAAGAAGAGTCAATAAAATATGAGACATGATTCCCTCTTCATAA
ATGTCATGAATTTCTTCTGTGTCAGTGCTCAGCGCAGCTAAGAGGCCAAC
TATCTAACAGATGATTATTCTCAATACCTAAGTATATGTTTAGTAGAATC
ACAATGGgcaacacccctccaacccccacctgaaaaaggtcacCTCCACC
TGAAATCTGTTATCAGCCCAACCCCCACCTTATTCAACAATCCATACCTA
AATTGTGGTCATAAGTCCCTAATACTTCAAACTGGAGAGAAAGAGActag
agaaaaacaaaactttcaaaatggattacgttttttcaaaatttatttca
taatCATAGTAAAAGCTTTTCGGCTACGCCATCagtacaaaaatgttttt
ttattattctcTAGTTTGtgcaaaaatgattgaaaatgaCAGAATAAATT
CAGAAACTTTGACAACGAACCTTCGCCTGAAAAATTTAACACCTGCCTAC
ATAGGGGTTATCTCCACCTGAAATTTCTCATTAACCCAAATCCCACCTTT
TTTAACAAATCTGAAAATCCTTTTGCCATAGCCAGGTCATTGAGGCTAAC
CCCCTCATGAAAATGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042106XLOC_042106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067413-exon-scaffold_469-1491911889:158867..159635TCONS_00067413-exon-scaffold_469-1491911889:158867..159635Clytia hemisphaericaexon
TCONS_00067413-exon-scaffold_469-1510915933:158867..159635TCONS_00067413-exon-scaffold_469-1510915933:158867..159635Clytia hemisphaericaexon
TCONS_00067413-exon-scaffold_469-1575043694:158867..159635TCONS_00067413-exon-scaffold_469-1575043694:158867..159635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:158867..159635 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.570178	0.617793	0.43039	0.421069	0.341741	0.405072	0.244351	0.53377	0.427092	0.661277	0.0641852	0.632892	0.468858	0.755434	0.53961	0.231634	0.285354	0.146239	0.673458	0.211417	0.36752	0.717054	0	0.264159	0.544155	0.607057	0.173739	0.370839	0.210951	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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