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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067323 ID=TCONS_00067323|Name=TCONS_00067323|organism=Clytia hemisphaerica|type=transcript|length=1871bpRun BLAST on NCBI protein sequence of TCONS_00067323-protein >TCONS_00067323-protein ID=TCONS_00067323-protein|Name=TCONS_00067323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp MMQNELEDGGNSNNKENTNDEEIYGPAVEDNGWIPKLFENNYRTTQLIFTRun BLAST on NCBI transcript from alignment at scaffold_469:52373..81770+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067323 ID=TCONS_00067323|Name=TCONS_00067323|organism=Clytia hemisphaerica|type=transcript|length=29398bp|location=Sequence derived from alignment at scaffold_469:52373..81770+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_469:52373..81770+ >TCONS_00067323 ID=TCONS_00067323|Name=TCONS_00067323|organism=Clytia hemisphaerica|type=CDS|length=22848bp|location=Sequence derived from alignment at scaffold_469:52373..81770+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067323 vs. Swiss-Prot (Human)
Match: CBPC3 (Cytosolic carboxypeptidase 3 OS=Homo sapiens GN=AGBL3 PE=2 SV=2) HSP 1 Score: 501.901 bits (1291), Expect = 5.378e-165 Identity = 254/495 (51.31%), Postives = 331/495 (66.87%), Query Frame = 3
Query: 267 RTTQLIFTKKNGRTFTCLRQPRDLYTSSKSDIHLNIWWPSEAQIYSRRPLHILYTXXXXXXXXXXXXDFSDQL--DKSANVFGKVVYDNSPDPEIRYFVNSKTDPRTTSSPAPYYTLKDESDNTLQFESRFESGNLMRAIKTGEYEYQLWLKFDLYTKKHTQWFYFQVKNAHPNKIYKFTIMNFLKSGSLYNEGMKPLLYSERDAQEKKIGWIRAGTHIKYYKNDIKIEENKERTYYSLHWRCSFANDNDTYYLAHSYPYTYSDLQEYLMFLSNDPQRKKCCKQRVLCQTLAGNQIYLLTITTPTRCPKQAKIKRTIVITARIHPGETIGSWMMKGLLDYLTSNEADAKILRETFIFKIIPMLNPDGVIVGNYRCSLAGRDLNRNYKTVLKDSFPPVWSTKYLVKKLQEEREVVLYCDLHGHSRKKNIFVYGCENKQEKLSTRLNTRLFPYILAKNAPDKFSFTNCRFRVQKNKEGTGRVVMWNTGIRYSYTLEV 1745
RTTQ++ + GR LR+PRDLY S S WP ++ + HI +TP PE ++ ++ L D + D +P FV S+ T P D DNTL FE+RFESGNL + +K EYEYQL ++ DL+T KHTQW+YFQV N +Y+FTI+NF K SLY+ GM+PL YSE++A+ IGW R G IKYY+N+ R Y+SL W F ++ DT Y AH YPYTY++LQEYL ++NDP R K CK RVLC TLA N +Y+LTITTP + K ++ +++TAR+HPGET SW+MKG LDY+ N +DA++LR+TF+FK++PMLNPDGVIVGNYRCSLAGRDLNRNY ++LK+SFP VW T+ +V +L E+REV+LYCDLHGHSRK+NIF+YGC+ + L R+FP +L+KN PDKFSF+ C+F VQK+KEGTGRVVMW GIR S+T+E
Sbjct: 52 RTTQILLEYQLGRWVPRLREPRDLYGVSSSGPLSPTRWPYHCEVIDEKVQHIDWTPSCPEPVYIPTGLETEPLYPDSKEATVVYLAEDAYKEP---CFVYSRVGGNRTPLKQPV----DYRDNTLMFEARFESGNLQKVVKVAEYEYQLTVRPDLFTNKHTQWYYFQVTNMRAGIVYRFTIVNFTKPASLYSRGMRPLFYSEKEAKAHHIGWQRIGDQIKYYRNN---PGQDGRHYFSLTWTFQFPHNKDTCYFAHCYPYTYTNLQEYLSGINNDPVRSKFCKIRVLCHTLARNMVYILTITTPLKNSDSRK-RKAVILTARVHPGETNSSWIMKGFLDYILGNSSDAQLLRDTFVFKVVPMLNPDGVIVGNYRCSLAGRDLNRNYTSLLKESFPSVWYTRNMVHRLMEKREVILYCDLHGHSRKENIFMYGCDGSDRSKTLYLQQRIFPLMLSKNCPDKFSFSACKFNVQKSKEGTGRVVMWKMGIRNSFTMEA 535 The following BLAST results are available for this feature:
BLAST of TCONS_00067323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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