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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067200 ID=TCONS_00067200|Name=TCONS_00067200|organism=Clytia hemisphaerica|type=transcript|length=1303bp TTGCGCGCGaaagtaaaaaagtaaacaaaacctGCTTTCACTTTCCTTTC TCTTTAGCTACCTGACATTGACATCTTCTTCAGTTCTTGTACgttatttt gttttgacttttatCCATGGTCCATGATCCTTAGCTCGCTACCATATTAA GAAGTTGAGAAATGGTTCAAATATTCCTAAAGCTTGGAGAAGACCCAAAA GAATGGAGCATTGTTGAACTTCAAGGAACTTTGGAGAGCAGTGAAGAAGA ATTATGTGGAAGTCATATCGGAAATTTACACTTTGATGATAAAGGTACGC CTCAGCTAATTTGTGGTCACCACCTGGTGACAGGCAAGATTCAAAAACTC GATAAACCATATGCAGTAATGAAGAAAAACAGTATTTCACATGGAATGAG CGAGTCAATGGAAATCGATGATTCAGATGGTCAATCAACAGCCTACGATA TTGTTGCTTTcgtcaaacaaaaaataatcttcAAAAATCGACCCAAACCA ATAATTATCAAAACTCAACCAACAAAAACGTGATAGTGTGAGGCATTCTA AAGGTGGCTTGATCTATATGATTTTGTTTCGCTCTCATTCAGTCAAATTT GAGAATTCCGACCACTTCATAAAACTTTAGATAAAGCTGCACGGTGGATT AAAGATGATGttcatgttaaaaacattttatttggaTTGCATAACAATTA TCTAATATTATTTCTAGAAATATTAATCCTATTATTGTAAAacgggctct tccagaaaatgttcgtacgtaggggttggaggatatagtgtccgggggta gtgaaaaatctacaaaatttgccttgtccagggggtaaacttgctctgtt ttgggggtaattttgctctgtttgagggtaatctTGAATGTCCAGGGTat caactaatgcttgtccggggcTTAGACCTGCTGTAAAAAGTCACAATCTC CGGAGggtaaaattccaaaaaaatgttatatcccccccccccccccccat attcaaatttttctggATAAGCCCAATATAGTTAAGTGTAAAGTAACGAT GAAAAAAAGTAGAATTTGATTTAAAGTATATCATTTTACCACAGTAATCT TACTTACTGCTTGCGAGTGTTTGTAagccaaaaaattcaaaaacaacccT GTTTATTTATTGACACATATAATAAACAAAATTAGTCTTTTTTGTGATCC AGTAGAATTATACAGTATGACATACTATTATACCAAATTCTTGaaattag agctttttaaaatttgatggatAACGCATCTAAAGGTCCGTTCTTAAAAT TAA Run BLAST on NCBI protein sequence of TCONS_00067200-protein >TCONS_00067200-protein ID=TCONS_00067200-protein|Name=TCONS_00067200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MVQIFLKLGEDPKEWSIVELQGTLESSEEELCGSHIGNLHFDDKGTPQLI CGHHLVTGKIQKLDKPYAVMKKNSISHGMSESMEIDDSDGQSTAYDIVAF VKQKIIFKNRPKPIIIKTQPTKT Run BLAST on NCBI transcript from alignment at scaffold_466:313779..321051+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067200 ID=TCONS_00067200|Name=TCONS_00067200|organism=Clytia hemisphaerica|type=transcript|length=7273bp|location=Sequence derived from alignment at scaffold_466:313779..321051+ (Clytia hemisphaerica) TTGCGCGCGaaagtaaaaaagtaaacaaaacctGCTTTCACTTTCCTTTC
TCTTTAGCTACCTGACATTGACATCTTCTTCAGTTCTTGTACgttatttt
gttttgacttttatCCATGGTCCATGATCCTTAGCTCGCTACCATATTAA
GAAGTTGAGAAATGGTTCAAATATTCCTAAAGCTGTAAGTATTCTTGCTT
TAAGTACTtaaataccgtgagattgggtaacttgcatcagtggaggctaa
catgcatagcatagccctcaaataaaagacctggctggttattaaaatac
aactacgcagctccactcTCAGCTCttctctaccattttgttttgaatta
actttgtattttaatgaccagcctatgcatgttagcctccactgatgcaa
gttacccaatctcacgatATTCACCAGTATTCATCCTCTAGTATAGTTTC
CAGATAGACGTTTTGTGGTCGAACGCGACCAAATGgaacagtcttttgaa
taaacTAATAAACCAGCTGCACTAAGTCAGCCCAAATGGCTGAGACGATG
AAGTACAAATAAAAGACCAAGCTTTGAAGGGCGCCCCATTTGCTTGGAAc
gtttaagcaaaaaatgatgATTGGCGCACAATGGAATCCGTCCAAATCAG
ATGTCGATAGAACAATTTTCTGGtcttagaaaaattagaaagaaATCATT
TCATCATTCTTTGGCCTTTCTGATAGCTTTTACATGCGAGGGTACTAGTG
TTGCGAGCTGAGGAGTGGTCCACCAGCCTTTTGACCATtgcagttaggaa
catttggcgagctcctgtacgcggccgcaatcaaaaaaatcaaaacgtca
ctcattaaaaaatgacattcgtgtcttttcgcactttctTTAGCCTAgac
tagacgatgtagcaaacatagtaagtataagcataCTGTGCTTTCCATTG
GCTGAAGTTTTCTTTTGCGTTGGAAAAACTTTTccaaactttcagcgatg
attgaccaaactgttacaatgaaaattatccagcgcattttttatcttct
taccttcttcattttcaatgaagcacttgaagtttactgaaggtaagcac
ataatatattcttataattaattaTATATATTCATTTAAACACGCTTTGT
TGTGCACTGCGGTGGAGTGCacgacgtaactcgcgcggcaactaactcgc
cttctgttggaagatcatattgggcgttttggcgtcaCCACCCTCAATGC
AGTGGGCACCTTTGTCTTTCcacaactctttccaccattttagatggcct
taacaatagatccaaaagggcgccataatcttggaagaatAATTTGTTTT
gctctccggctttgggaagtagcaatgtttttggttgtttttcgatggaa
aatgctAAGAAatttaagtttacaagtgtcatttagtttttgctggctta
tagaatggcatgatcctggatggtttccctaactgccTTGGAACTTAGCA
GAacaaaaaaggaggaaaaaagtggaaatttttccgaccctttaTGTGAC
TTAAATATAAGTTTCTAATTTTCTCTACCCCTACAGGGACTGACAGGCTC
CAAAAAAGCATCCTTAAGGGTGATACATACCAGTATCTTTGCCTAGGTAC
TAAGTTTCGGTGGCAAGCAATGATAAAATGCAGAATATATGGATAGTTTA
GAAGCCAATACTCCTCTGTTTATTAAATTCAATGTggttttaaggctaaa
aattaGTATATCGATcacttttttagttttcaaaatcttgaaaaagatGT
CTGGCCGAAATTTAGTACATNctaaattgaaaatttctcccgtcggcgca
aaccatggttgtgcctcctcgttccccttttgaaaactattcacgctaat
tcacaattaatgctCATGGAACCCGTCAACGGGGGGACCAGGGGGCATGG
CCCATCATGTTGCTTGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctttgaacccttca
aaattcaaagaatttctccgttacccaaccatggtgggctttgtcaattt
actcaaatatacctcagccctcaaactggtgccctttgatgtgaccaggt
gtccaacaatttttgatatgcataagtcaagattacgtcatttttcctat
cgaaaaGACCcaaaaaaacacccctgtgtcaaaaatagaaaaacagaggt
aaaaatctagatttttcgCNAGCAGCAAGCTCGCGCTTGATCCAGCTTTA
GCTTTTAAAGTATCCTTGGAAAAGCCCATATACAGAAGAAACGGTCTACA
TGAAATGACAGTGATACAGAATTGTTCGAAGAAAAGAAAAGTTTCTTTAA
AACTCACTTTCTTTATAAGCTCTATTAtatttacaatttctttaataatt
aattataTTGATAACTTTaagaaaaaatacattttcttttattcttttta
ctATAATTATATGCCTCTTTTTATGTTatgtgttttttcttttctttagc
ttttactaagaaaaattattttcccgcGCTAAGCAATCCCGATAAATTGT
TTCCCGAAAATAATCCAAAATCGGAATTAAAAACAAATCCAAAGCACTTC
TTGGCAGCAGCGGCttgcaaaaaattttcaaaccgatttaaaaaacggcg
tgatggcgtgaaaatgaagtgccggcgtgatcgtgaaatctagttttttt
aggcgtgatggcgtgaaatttgtaGTTctgcgtgatcgtgaaaattatat
ttattagttgaatcgtatttctatgtccattttagccaatttagagggtt
tagatttcaaaattttcttggtcggccccaactatgNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTCAAAACCAAAACAGTGGTGTTTTCACCACATTTTGGACTT
TCTGTTCCGCCATTTCCATATAAAGCATGTTGTTCTTTCCATCCAGCAAG
CATGGTCCCGTCGTCCCACCATGCGCGGgtcatgcatgcaaactttaaaa
taagcgaggcaagacgtgccaacctcgtttccagactgttttcgaaaaga
cagtatgttttaaaaaagatagtatcgttttaaaatagatagtattgttt
aaaaaagatagtatcattacaaaagatagtatgttttaaacgagaatagt
attttttcaaacggaaatagtattttttcaacgaaaatagtatgttttaa
tcgaaaatagtatttttttaaaaagatagtatgttttaaacgaagatagt
attgttttaaagagatagtatgtatttccgctttggcgcgccatagagta
tttagttattcaaaagaccgcCGCGTTTGCCAAAACATCTATTAGGcaca
attttgaattgaaaagttttgtgtGAGAATATTCTAtctgtaataaaaaa
atcaaattatagaTATCAAGTTCAAGGTTCAAGTTTCAAGTTTATTTTCG
TTTTATGAGCTTTGTACATTTCAAAAATTCCTAACAGAAAAAAACCCTAA
GGGTTTACAAGGTCGACAGGAAATAAAAACTATAATaatatataccttaa
gggaagaaattttggtggctggaaagaaatttaaatttttagattcaaaa
TGGTATTGTGTCCTACTAAGGTTGGCTAATTGTATCCAATATACCTTCCC
GGTCCCCTAAAGGTCTATTCTCAATCTTAACCAAGAAGGTTTTTGGGATG
GATGATTTACTGATGAACCTCAATGTGATCATTTTGGGGCTTTTAGCTGT
TGTGTTGTGTGCTATAATGGAGGTAGAATCAAACCTTCAATGTTGAATAG
TTTTTTTGGATAACGCGGCGACCTAtttattgaataacaaattactccct
CAACCAATGAAAAATGTAGTAAATTATCTTCTCTCTAGGTAACTGTCGTG
GAGTAATAAGTTATTCAATAGGCCGTCATgctctccaaaacaactatttt
tTGCATTGGCGGCGCTTCACTGATTTTCTATTCTGGGAGGATTATTCCTC
ACTTTTAAGTTCAGTACTttcattgttttattatttgaagAAATATTCTT
TTAATGTTTAAGTGGAGAAGACCCAAAAGAATGGAGCATTGTTGAACTTC
AAGGAACTTTGGAGAGCAGTGAAGAAGAATTATGTGGAAGTCATATCGGA
AATTTACACTTTGATGATAAAGTAAGCTCCCTTTTTAGCATAAAGACACC
CATACCAATCTACAGTGTGCCTGGAATAAAAAGTGGAACAGAAATTCTAA
AATAAAGATGGATAAATCCATTATTTCTAACTATTAAATGtcatgaaaat
gaaataattatttcctttactttttttaaccctatttgatttttgtaacc
cggggggggggggggtagaatttATCACCctcaattattttttatctgaa
aatacATATGTTGGTACATATGTTCTCATCAAAGCGATGACTTCATGAct
aaatttccacctgtcggaaaaaagcaaaaagttatGGTTTAAAAAAATGT
CTGTCACAGTTTAACCAatataaagatattcaaattatGTTTGAAGATTC
TAGAGGATAAAAGGTTCCCCtgtaacataattgccggttttggaTTTTCC
ATAAAGACTTTTCTTTAAATcaatgctgaagatgagtaaaattttcaaaa
tttgtcacaAATGATGATATTTTGTAAAGTAGCTCAATGGTTGGGCAAAt
gcccgcgaatggcatggttgtgaaTTCGAGTCTCACCGGATCTGTTGGTT
TTCTAACGGTTCTAGTGGCTGGAAGAAGACAGCACGAGAGCGACTGTATT
TACTTCATATTGTAATACATAAGGgcattcattttgtaaaattaCTTTAA
TTTGCTTTTCCAGGGTACGCCTCAGCTAATTTGTGGTCACCACCTGGTGA
CAGGCAAGATTCAAAAACTCGATAAACCATATGCAGTAATGAAGAAAAAC
AGTATTTCACATGGAATGAGCGAGTCAATGGAAATCGATGATTCAGATGG
TCAATCAACAGCCTACGATATTGTTGCTTTcgtcaaacaaaaaataatct
tcAAAAATCGACCCAAACCAATAATTATCAAAACTCAACCAACAAAAACG
TGATAGTGTGAGGCATTCTAAAGGTGGCTTGATCTATATGATTTTGTTTC
GCTCTCATTCAGTCAAATTTGAGAATTCCGACCACTTCATAAAACTTTAG
ATAAAGCTGCACGGTGGATTAAAGATGATGttcatgttaaaaacatttta
tttggaTTGCATAACAATTATCTAATATTATTTCTAGAAATATTAATCCT
ATTATTGTAAAacgggctcttccagaaaatgttcgtacgtaggggttgga
ggatatagtgtccgggggtagtgaaaaatctacaaaatttgccttgtcca
gggggtaaacttgctctgttttgggggtaattttgctctgtttgagggta
atctTGAATGTCCAGGGTatcaactaatgcttgtccggggcTTAGACCTG
CTGTAAAAAGTCACAATCTCCGGAGggtaaaattccaaaaaaatgttata
tcccccccccccccccccatattcaaatttttctggATAAGCCCAATATA
GTTAAGTGTAAAGTAACGATGAAAAAAAGTAGAATTTGATTTAAAGTATA
TCATTTTACCACAGTAATCTTACTTACTGCTTGCGAGTGTTTGTAagcca
aaaaattcaaaaacaacccTGTTTATTTATTGACACATATAATAAACAAA
ATTAGTCTTTTTTGTGATCCAGTAGAATTATACAGTATGACATACTATTA
TACCAAATTCTTGaaattagagctttttaaaatttgatggatAACGCATC
TAAAGGTCCGTTCTTAAAATTAA Coding sequence (CDS) from alignment at scaffold_466:313779..321051+ >TCONS_00067200 ID=TCONS_00067200|Name=TCONS_00067200|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_466:313779..321051+ (Clytia hemisphaerica) ATGGTTCAAATATTCCTAAAGCTTGGAGAAGACCCAAAAGAATGGAGCAT TGTTGAACTTCAAGGAACTTTGGAGAGCAGTGAAGAAGAATTATGTGGAA GTCATATCGGAAATTTACACTTTGATGATAAAGGTACGCCTCAGCTAATT TGTGGTCACCACCTGGTGACAGGCAAGATTCAAAAACTCGATAAACCATA TGCAGTAATGAAGAAAAACAGTATTTCACATGGAATGAGCGAGTCAATGG AAATCGATGATTCAGATGGTCAATCAACAGCCTACGATATTGTTGCTTTc gtcaaacaaaaaataatcttcAAAAATCGACCCAAACCAATAATTATCAA AACTCAACCAACAAAAACGTGAATGGTTCAAATATTCCTAAAGCTTGGAG AAGACCCAAAAGAATGGAGCATTGTTGAACTTCAAGGAACTTTGGAGAGC AGTGAAGAAGAATTATGTGGAAGTCATATCGGAAATTTACACTTTGATGA TAAAGGTACGCCTCAGCTAATTTGTGGTCACCACCTGGTGACAGGCAAGA TTCAAAAACTCGATAAACCATATGCAGTAATGAAGAAAAACAGTATTTCA CATGGAATGAGCGAGTCAATGGAAATCGATGATTCAGATGGTCAATCAAC AGCCTACGATATTGTTGCTTTcgtcaaacaaaaaataatcttcAAAAATC GACCCAAACCAATAATTATCAAAACTCAACCAACAAAAACGTGAATGGTT CAAATATTCCTAAAGCTTGGAGAAGACCCAAAAGAATGGAGCATTGTTGA ACTTCAAGGAACTTTGGAGAGCAGTGAAGAAGAATTATGTGGAAGTCATA TCGGAAATTTACACTTTGATGATAAAGGTACGCCTCAGCTAATTTGTGGT CACCACCTGGTGACAGGCAAGATTCAAAAACTCGATAAACCATATGCAGT AATGAAGAAAAACAGTATTTCACATGGAATGAGCGAGTCAATGGAAATCG ATGATTCAGATGGTCAATCAACAGCCTACGATATTGTTGCTTTcgtcaaa caaaaaataatcttcAAAAATCGACCCAAACCAATAATTATCAAAACTCA ACCAACAAAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067200-exon-scaffold_466-1491911889:313779..313962 | TCONS_00067200-exon-scaffold_466-1491911889:313779..313962 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1510915933:313779..313962 | TCONS_00067200-exon-scaffold_466-1510915933:313779..313962 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1575043694:313779..313962 | TCONS_00067200-exon-scaffold_466-1575043694:313779..313962 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1491911889:319241..319349 | TCONS_00067200-exon-scaffold_466-1491911889:319241..319349 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1510915933:319241..319349 | TCONS_00067200-exon-scaffold_466-1510915933:319241..319349 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1575043694:319241..319349 | TCONS_00067200-exon-scaffold_466-1575043694:319241..319349 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1491911889:320042..321051 | TCONS_00067200-exon-scaffold_466-1491911889:320042..321051 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1510915933:320042..321051 | TCONS_00067200-exon-scaffold_466-1510915933:320042..321051 | Clytia hemisphaerica | exon |
TCONS_00067200-exon-scaffold_466-1575043694:320042..321051 | TCONS_00067200-exon-scaffold_466-1575043694:320042..321051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_466 | supercontig | scaffold_466:313779..321051 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR018607 | Ctf8 |
Vocabulary: Cellular Component
Term | Definition |
GO:0031390 | Ctf18 RFC-like complex |
Vocabulary: Biological Process
Term | Definition |
GO:0007064 | mitotic sister chromatid cohesion |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007064 |
mitotic sister chromatid cohesion |
cellular_component |
GO:0031390 |
Ctf18 RFC-like complex |
Blast
BLAST of TCONS_00067200 vs. Swiss-Prot (Human)
Match: CTF8 (Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens GN=CHTF8 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.687e-16 Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 3
Query: 201 EWSIVELQGTLESSEEE-LCGSHIGNLHFDDKGTPQLICGHHLVTGKIQKLDKPYAVMKKNSISHGMSESMEIDDSDGQSTAYDIVAFVKQKIIFKNR 491
EW ++ELQG +E+ L G+ +G+LH+ +G P LI GHH++ GKI L+KP+AV+ K+ + G + E+ G T Y + A +K KI+FK R
Sbjct: 16 EWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILYGKIIHLEKPFAVLVKH--TPGDQDCDELGRETG--TRYLVTALIKDKILFKTR 109
The following BLAST results are available for this feature:
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