TCONS_00067190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067190
Unique NameTCONS_00067190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067190 ID=TCONS_00067190|Name=TCONS_00067190|organism=Clytia hemisphaerica|type=transcript|length=1709bp
GTTTGTGACctccagaaagaaaaaaatcagtcataAGCTGTGTCTGTTAT
CTTACAATTCCTTCTTTTCATTTGCTGCCAACGCTAGAAGTTGATGaaat
atagaATATTAAAATCAACATGATGAAATTATTTGTTCTGGCCAGCATTG
CAACAGCTGCTCTGTGTATGACCATTGAAAAAGCTGAATTAATTGCAGAT
GAAGGATGGCAATTATGGAAATCTACACATAATGCAGCTTATGCGGACTT
TAATGAAGAAAAAGTTAGATATACAATTTGGCAAGACAATGTTAGACGTA
TTACCCAATTCAATCGTAACAACAAAAAGATGTCTTTAGGTATGAATCAT
TTTGGGGATATGACAACTACTGAATTCAAATCGAAAATGAATGGTTACTT
GGCTGGAAGCAAACAACAAGGATCTACTTTCATGACTCCAAACTTTGCTG
AGATTCCAGATTCTGTTGATTGGAGAAAAAAGGATGGATATGTTTCTGAA
GTCAAAAATCAAGGACAATGTGGATCATGCTGGGCTTTCTCTACTACTGG
AGCTTTGGAAGGACAACATTTCAGAAAGACCGGTCAAAAGGTTGATTTGA
GTGAACAAAACTTGGTTGATTGCTCTAAAGATTATGGAAACTATGGATGT
CAAGGTGGATTAATGGACAATGCTTTCAAATACATCAAAGCCAATGGGGG
GATTGATACTGAGAAAAGTTACCCATACGAAGGAAAAaatcttCAATGCA
GATTCAAGAAATCCAGCGTCGGAGCTGACGATACCGGATTTGTTGATATC
CCAAAAGGCAATGAAGATGCTTTGAAGAATGCCTCAGCCACTGTCGGTCC
AATCTCGGTTGCTATTGATGCTTCACACTTCTCATTCCAATTTTACAAAG
AAGGTGTTTATGATGAACCACAATGCAGTAGCACCCAACTGGATCACGGC
GTCTTGGTTGTCGGTTATGGATCCATGAATGGACAAGACTACTGGATCGT
CAAAAACAGctGGGGACCAGGATGGGGCTTGAAAGGATACATCATGATGA
GCCGTAACAAGAACGACCAATGCGGTATCGCTTCATCCGCATCTTACCCA
CTCGTCTAAGATGTTTTTATACagcttttcgaccgtagccaccaattgcc
gcgcgggcatttttttgtccgctttatcccactaaaaccgtcccagtccc
agtcttttttaatagacaaaagaaaaatgtgtGAAAAAAGGAGTGGCACG
GGCCTGACTGTGCGACcacggtcgaaaagatgtattAGTGATGTTGTATA
TTTCCAGGTGCCCTAAATGTTAATCTTTTCTAGGAACTGAAAACTTTTCT
TTCTGTTGACCATCTTTGATAGAGTTTTGGTTTCTGATAACTTCGTTTCG
TAAAAACTTGACACCtgggaaaattctttttgttttatatAGATGTTAAC
AAATAATTTCTTGTCAACGAGCATTTGTACTATTGATGCAATAAGCCTTA
TTTTGCTTagtatttaaaatttgaaaacgagtttttaaaaaaataggtta
aaatagtaaaaaatccaacataaaaaagtatttaaaattttgacgttgta
tttttgtttttatttatcgCCGTTATGACGAAAgcttctttgtatttttt
tttctaatttttgatggaataaaaaaccctgaaaaatagtgataatattt
cacaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_466:255678..264637+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067190 ID=TCONS_00067190|Name=TCONS_00067190|organism=Clytia hemisphaerica|type=transcript|length=8960bp|location=Sequence derived from alignment at scaffold_466:255678..264637+ (Clytia hemisphaerica)
GTTTGTGACctccagaaagaaaaaaatcagtcataAGCTGTGTCTGTTAT
CTTACAATTCCTTCTTTTCATTTGCTGCCAACGCTAGAAGTTGATGGTAG
GTAGGCTGACTTACTTTTTACCTTATCTCTAGTCTACTCTTTAACACTCT
TTTTGTTACTTCTCAgctcaaatttcaattttgtttttgtattgtttgtt
tttactttattctAGAAGAGATCTAACTTCTTTCTTGTCTGTCTTTTTAC
GTCAGTAACTTTCACTTTTACTGTTGTTAATTTGTCATAAAGTTCTAGTG
GTGTCATGTTTAAGTATTattttacactagaataacctTAAAACAGTAGG
Gtggtcaggccaaaattttcccctcaaattttgaaaaccaaactaatttt
atttgaaagtccttacctttgtgagaaaaatgaggggtcatttgttaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNgtatttaaaaaaaaagaatgaacaagtttggagttg
ttaaggataagttatgatggatggaatgttctaattttgattttcgactt
tttccacgCAAAAACGCCCTGCCCAGCGCCAGTTGGCAACCGGTCTAGTT
Atggcgaccgaacgtctttgaatccagaaaagtcatacaaaaacaaacct
ctggagaatttcttttggtagttatctgccttgacctattccccgtactg
tgtaaaaaaaattctagaaaaaaacaagtagaatccgaaagatccaactt
tgcacggaagcattcgaaaaagccggattttttgaaaaaaataaaaaatg
gctacctgtggacaaaaaagcttcgtaAGTAAAAACGTTTCAACTAacac
tccaaaaaatacttttccaAAACGATGAGTATGTTAGAAAGTATTTCTAT
ATTTAAAAATCAGCTCGATAGGGTTTCCTTcgtctgaaatattgataaaa
aagttgatgcatGCAATCATTTTCGAAATAagacgtccagtctgcgaccg
aaaaaatcgaaagtgagaaaaagaagactctacattgcaatcaaaacatt
ccagatgctgagaaaaaaaagaagactttacattgcgatcaaaacattca
agggGCATGCCCGCAGTCCTTAACTTGACAACTCCAGCAATGCGAAGTTT
CTAGCTCCGGAttgaaataacaaaggaaaCCGGTATATTGAATCTCGGGG
tagacataaaaaattcccAGGTTTTTATCAAAGAAGACTCTCTATAGAct
gccactttcaaaacaaaacaaaaacaaactttactttagaaaaaaatggc
gacttgaagaaaaattctaaaaaaacatgccaaagtgagctattttaaaa
caaaagaacgagtgcaaagaaattaaatatgagtttttttatcatcctga
tcaattcATATGACCTAACCTGCAAGTAgactgattttctctttttagcg
atcggtcgcagactgattttctctttttagcgatcggtcgcagactggta
catcggtcgggaactgggcactagtaccgctcgcttcgaaagttttttat
tctaagaagattgcctcaaataaaaaatcaattaacaaacacgaagagca
tgttaaaagttgtctaaccCTTGGTCGAAAAGgattaaaaagttaagaag
tttgtgagaaatttgaataaaaaaatttcgatcgccaactgggcagggta
ctctacAGAGGGTGGTTCAGGCCATTCGAGAATTTGTCTGTGTAACAGGG
ggggacgacacaggatttctgaGGGCAAAAGtcttcaccaaaattcgaaa
tttccaaggcaagagaagaaaatgtatgaatttctaAAGCAATTGATTGA
ATTAAAAacggcaaaaaagagtggaatttctgaCACATTTTGCAAGAGTA
CATGAATTTTCATCATGAATTTTctgaccaccactggaaaaaagaattat
ttccgaggctagaaaaaattttcaaatgtacGTCCTCAGACGGGGATAAC
GAGCATTTTTTGGAATGGCCCTTTAGattttttaacccttttcaGTCCCA
GAGGTTTTACAGCCTGTTACagctaccgtgagattgggtaacttgcatca
gtggaggctaacatgcatagccctcaaatgaaagacctggctNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatacaactatgcagctccg
ctcgcagctctactctaccatttttgttttgatttaattttgtattttaa
tgaccagccaggtctttcatttgagggctgtacatgttagcctccactga
tgcaagttacccaatctcacggtacatcaaaggaaaaaatttgaaagaag
aaaatttggaagatttggtcaaaatctgtcaaattaagttcccgccaaat
taaattttttctgtcgtctgccaaattaaattaccGATAAATTTAAGTTG
CTCTATTTAtcccccaaatgtgtgctatttcaggctttaaaacaggtttt
tccttttttaattgcgttttttggacaaaaatgtccttcgtccgccaaat
taaattcctgctaaatttaatttttcaagttaacggTCAAATTTTATTCC
CtctgaaaaaccttttttggcCATCGGCAAGGAAGAAgctgtaaaaaatc
atttttgagccTACAGTCTTTGTTGCTATTTTATGTAATTTTAAGGGAGG
GTAACAAGTAGGCAAAATGGGTACCAGGTATGTGCAAGCCAAGGGTCCCT
TTTTTTACACCCTTTggaagtctctcaaaggggtacaaaaattattaaaa
agcaaTGAGTTtctgtaagggttccaaaataataaaaatcaatAATTGAC
TCCTTCAAAGAAAGGGATATTTAAATTCTTGAAATATGgacgaaaatgaa
aatgaaattttttgaacaTATTCTCTCAGCTAAGGGtggcaaaaacatca
aaaatgggcaaaattttaaaaatttcttgcAAGCCTAGTATATACAGGCT
CAGGCTCTTAGTGGAAAGTTTTCCTCCTTGTTGTTGCCTCACAACACTTT
TGCTGAGATGAGCAAGCCAGCAATcctcaaaatggcaaatttcaaatgaa
aagcCTAGAAAATAGCACAAAATGGGTGCTTTAAATAAAGAGCCTCAACA
ACTACTTAAAAGCcaccaaaaatttaatttttcttctctcaACTCTAGTT
AGCACCTTGGAgcctttgtttattttttcaattgttttcaaatttcttgG
GGGGACActcaatcaaagaaaaaagatcCTTACAGTACTGtgcattttta
aaaagattatttaCCATTTTGAGGCATAATATGGTCAGATTTCCCAAACT
TTACATCCTTAGATGCACTTTTGCTCATATTTCGACCCTTACTGTGCAAT
TTGGGAAGCTTGGGAAAAGGACATTGTCCAACCCAAATAGCTTCTTGTTC
AACCCAAAAAGCGTGactttcaagctaaagcaaccttGAACCAACATTTT
GTCCTACCCAGTCCTACCtgtaaaatctttattttgaccCTTGTGGTAGG
TCGTTTATCTGTAAGGAATATCAAAATTAGGTCACAGACAAGTTGTCAGG
AACTGAACTTTAAAATTGACTGGATATGCCATATATATATCCAGCCTCAT
TTTCAGAGTTCGCTGTTTTTTGATGGATTAGTGCAATTGTTTTGGCAGGG
ATTCTGATGCAATGTATTGCAATGCATTACACACTCACCCTTTCATATGT
TTAAGCTGGCTAAGAATGAATTATTGCTAAAAAGTATATATATTCTCTTT
TGTATCAAGGGAACCAAGGGAATATGCTTCTGCTGACCTAAATTTCATTG
GTTTTATtgctattttttagaaatatagaATATTAAAATCAACATGATGA
AATTATTTGTTCTGGCCAGCATTGCAACAGCTGCTCTGTGTATGACCATT
GAAAAAGCTGAATTAATTGCAGATGAAGGATGGCAATTATGGAAATCTAC
ACATAATGCAGCTTATGCGGACTTTAATGAAGAAAAAGTTAGATATACAA
TTTGGCAAGACAATGTTAGACGTATTACCCAATTCAATCGTAACAACAAA
AAGATGTCTTTAGGTATGAATCATTTTGGGGATATGACAACTACTGAATT
CAAATCGAAAATGAATGGTTACTTGGCTGGAAGCAAACAACAAGGATCTA
CTTTCATGACTCCAAACTTTGCTGAGATTCCAGATTCTGTTGATTGGAGA
AAAAAGGATGGATATGTTTCTGAAGTCAAAAATCAAGGACAATGTGGATC
ATGCTGGGCTTTCTCTACTGTAAGTTTTCGAATTCATCACTTGGCTGAAC
TGTGTTTGTTATTGGGAAAGCTAAGCTCCATTTAATTTAACTAATTTGGT
TACAGTGGGAGAGTCGTGTTACCCTCATGTTTGCAACAATAAAATTATGT
TGTTTTTTAACAAACAGCTAGGATTATATTTTGGGAGTTGCActagtttt
tccaaaaatttgtaaaatttaatgcttgacaaaattttcatacccaagat
ttttgccaaaaactcTTGTCTTCTGTAAAAACCCTAGGAAGTGGAAAGAA
ATTAGTTTCGGATGTCCAAAAATAAGCCCCACAAAAGTTTTTATCCACTT
CAGGTAAAGGGTTGTGTgtacagtataattgtttttcatCACAAAATTAA
TGTTTGTTGTGTCTGTTTTTATAGACTGGAGCTTTGGAAGGACAACATTT
CAGAAAGACCGGTCAAAAGGTTGATTTGAGTGAACAAAACTTGGTTGATT
GCTCTAAAGATTATGGAAACTATGGATGTCAAGGTGGATTAATGGACAAT
GCTTTCAAATACATCAAAGCCAATGGGGGGATTGATACTGAGAAAAGTTA
CCCATACGAAGGAAAAGTAAGAGCTATTTCTGGTTGCTGCAATATACATA
CATATAATTCAGTTATCTTTAATTAATGTAATATAAATGATTCATGGCTT
CTTGAATTGATAAGAAGGCTTTTAAAGTACGAAAATCTCTGAAATTATCT
TATTTGTTTAACCCGTTTTTCTCGTTTCCTTATTATTTAGAGACAGTAAT
TTTGAAGTCTTTTGAGGAGATTTCTATAATTGACTAGTTTCTGCTTGTTT
CAAATATCTTGTGTTTGATAACTGTAGATCCTTACCCATCTggcttttta
aataaaattattctcaattttttttacagaatcttCAATGCAGATTCAAG
AAATCCAGCGTCGGAGCTGACGATACCGGATTTGTTGATATCCCAAAAGG
CAATGAAGATGCTTTGAAGAATGCCTCAGCCACTGTCGGTCCAATCTCGG
TTGCTATTGATGCTTCACACTTCTCATTCCAATTTTACAAAGAAGGTGTT
TATGATGAACCACAATGCAGTAGCACCCAACTGGATCACGGCGTCTTGGT
TGTCGGTTATGGATCCATGAATGGACAAGACTACTGGATCGTCAAAAACA
GGTAAGAGTTGAACAAATTGATCCAATAAAACATTCTATCGTAACatctt
gaagaaaaaaatcgatttaAACAGCACACTAAATTGAAACTGCTATTGAA
AACAATCAtcgaatattttaaaatataatttaatgatttttgttttcttt
ctttttttagctGGGGACCAGGATGGGGCTTGAAAGGATACATCATGATG
AGCCGTAACAAGAACGACCAATGCGGTATCGCTTCATCCGCATCTTACCC
ACTCGTCTAAGATGTTTTTATACagcttttcgaccgtagccaccaattgc
cgcgcgggcatttttttgtccgctttatcccactaaaaccgtcccagtcc
cagtcttttttaatagacaaaagaaaaatgtgtGAAAAAAGGAGTGGCAC
GGGCCTGACTGTGCGACcacggtcgaaaagatgtattAGTGATGTTGTAT
ATTTCCAGGTGCCCTAAATGTTAATCTTTTCTAGGAACTGAAAACTTTTC
TTTCTGTTGACCATCTTTGATAGAGTTTTGGTTTCTGATAACTTCGTTTC
GTAAAAACTTGACACCtgggaaaattctttttgttttatatAGATGTTAA
CAAATAATTTCTTGTCAACGAGCATTTGTACTATTGATGCAATAAGCCTT
ATTTTGCTTagtatttaaaatttgaaaacgagtttttaaaaaaataggtt
aaaatagtaaaaaatccaacataaaaaagtatttaaaattttgacgttgt
atttttgtttttatttatcgCCGTTATGACGAAAgcttctttgtattttt
ttttctaatttttgatggaataaaaaaccctgaaaaatagtgataatatt
tcacaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041976XLOC_041976Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067190-exon-scaffold_466-1491911889:255678..255773TCONS_00067190-exon-scaffold_466-1491911889:255678..255773Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1510915933:255678..255773TCONS_00067190-exon-scaffold_466-1510915933:255678..255773Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1575043694:255678..255773TCONS_00067190-exon-scaffold_466-1575043694:255678..255773Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1491911889:262148..262596TCONS_00067190-exon-scaffold_466-1491911889:262148..262596Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1510915933:262148..262596TCONS_00067190-exon-scaffold_466-1510915933:262148..262596Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1575043694:262148..262596TCONS_00067190-exon-scaffold_466-1575043694:262148..262596Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1491911889:263002..263193TCONS_00067190-exon-scaffold_466-1491911889:263002..263193Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1510915933:263002..263193TCONS_00067190-exon-scaffold_466-1510915933:263002..263193Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1575043694:263002..263193TCONS_00067190-exon-scaffold_466-1575043694:263002..263193Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1491911889:263507..263778TCONS_00067190-exon-scaffold_466-1491911889:263507..263778Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1510915933:263507..263778TCONS_00067190-exon-scaffold_466-1510915933:263507..263778Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1575043694:263507..263778TCONS_00067190-exon-scaffold_466-1575043694:263507..263778Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1491911889:263938..264637TCONS_00067190-exon-scaffold_466-1491911889:263938..264637Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1510915933:263938..264637TCONS_00067190-exon-scaffold_466-1510915933:263938..264637Clytia hemisphaericaexon
TCONS_00067190-exon-scaffold_466-1575043694:263938..264637TCONS_00067190-exon-scaffold_466-1575043694:263938..264637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:255678..264637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
108.685	105.946	123.379	163.307	175.59	171.87	150.976	173.044	70.0777	59.5447	78.6542	52.2525	48.2368	65.6163	38.4785	35.9034	57.9216	51.7932	113.071	194.741	84.0556	71.775	130.101	142.56	390.389	418.167	709.588	866.929	41.6412	37.0973
Blast
[Close]
BLAST of TCONS_00067190 vs. Swiss-Prot (Human)
Match: CATL1 (Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2)

HSP 1 Score: 357.836 bits (917), Expect = 1.628e-118
Identity = 180/333 (54.05%), Postives = 223/333 (66.97%), Query Frame = 3 
Query:  144 SIATAALCMTIEKAELIADEG----WQLWKSTHNAAYADFNEEKVRYTIWQDNVRRITQFNRNNKK----MSLGMNHFGDMTTTEFKSKMNGYLAGSKQQGSTFMTPNFAEIPDSVDWRKKDGYVSEVKNQGQCGSCWAFSTTGALEGQHFRKTGQKVDLSEQNLVDCSKDYGNYGCQGGLMDNAFKYIKANGGIDTEKSYPYEGKNLQCRFKKSSVGADDTGFVDIPKGNEDALKNASATVGPISVAIDASHFSFQFYKEGVYDEPQCSSTQLDHGVLVVGYG----SMNGQDYWIVKNSWGPGWGLKGYIMMSRNKNDQCGIASSASYPLV 1106
            ++  AA C+ I  A L  D      W  WK+ HN  Y   NEE  R  +W+ N++ I   N+  ++     ++ MN FGDMT+ EF+  MNG+     ++G  F  P F E P SVDWR+K GYV+ VKNQGQCGSCWAFS TGALEGQ FRKTG+ + LSEQNLVDCS   GN GC GGLMD AF+Y++ NGG+D+E+SYPYE     C++      A+DTGFVDIPK  E AL  A ATVGPISVAIDA H SF FYKEG+Y EP CSS  +DHGVLVVGYG      +   YW+VKNSWG  WG+ GY+ M++++ + CGIAS+ASYP V
Sbjct:    4 TLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREK-GYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333
The following BLAST results are available for this feature:
BLAST of TCONS_00067190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL11.628e-11854.05Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2[more]
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