TCONS_00067217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067217
Unique NameTCONS_00067217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067217 ID=TCONS_00067217|Name=TCONS_00067217|organism=Clytia hemisphaerica|type=transcript|length=1401bp
ACGTCAAATCAAGGCATATTTGGATGTTTGAAGGCAGAAAAGTATCGGtc
agtaaaaaaaaacacaaaaatgtcGGATGAGAAATGGCTAGAGGATAGTG
GAAATTTGGAACAGAAAGAAGAAGAACCATTCCCATATGCGGAAGGTGAA
CATGAAGAAATGCCAGATGAAACTGTTGAAGAGGACCCGgaaATAGAGGC
TATCAAAGCCAGAGTCAAAGAAATGGAGGAAGAAGCAGCAAAATTGAAGG
AAATGCAAAAAGAAGCAGAAGACTCACTAATGAGCCCATCTTCTCATGGA
GCAAGTCCTGCTGCATCTAGTGAAGCTAAAGGTGATATTGATAGTCGATC
GGTGTATGTTGGCAATGTTGATTACTCAGCAACTGCGACAGAATTAGAAC
AACACTTTCACGGATGTGGATCTGTAAACCGAGTGACCATTCTTTGTGAT
AAGTTCAGTGGTCACCCAAAAGGATTTGCTTTTGTGGAGTTTGCAGACAA
AGAGAGTGTGGAAAATTCAGTAACGCTATCCGACACTCTTTTCAAAGGAA
GACAAATCaagGTGACACCAAAACGAACCAATATCCCAGGTATTTCAACG
ACAAATCGAGGGTTCAGAGCACGAGGACGCGGGCGTGGTAGAGGAGGCTT
TGGATACAGCCCAAGAAGAGGACGAGGAGCATACAGATCTAGACGTGCAT
CTCATTTTTCACCATACTGAGAGAAAAAATGAAGACCcccagaaaaaaaa
gaaaacaaaagatgagaaaaaagagcgaaaagatgataaaaagaacaaaa
aaaagaacaaaaaaaagaactcacaaaagagaaaagaataaaaagaatga
aaattaattgGGGCATTTAAGAAAAAGAGGGTATACCACTATGCCTTGCG
AAATTAAGTGAAATAGAGAATTACAGGAAATTTGGTAGGCTCCTTATTAA
GTCAACGATAAGTTGGATTGATGTTGATTGATTGCGGCTATTGATTGGAC
TGGATTCGGACTGGTTGCTTCAATATTCCTTGTTGGTTGAGCTTCGCTAG
CCATGATTCACTTGCTGATTTTAGtgggtttgttttgattcagCAACAAT
TGTATGTCAAGTGTTTACAGAGGCAATTATATGGctactttaaaaaatat
ttttttaatgacttagttatttttattcaaaagaattTTAACGGTTGTAC
TTTTCTCTTAATTTCCTttgaatttgaacttttttcatgtgaagattttt
aaacaaaGTGACTTTTTAGTAGCTTTATGTGTAAGGGTATTTTATTATGT
CCGTTTTGGAATTCGGTTATTTTTCTTGTGTATAAGTTTATTTTACTAAT
AACCATTTTTCTTGCTAGAtagtttaaaacaaaagatttctttgaattaa
c
Run BLAST on NCBI

transcript from alignment at scaffold_466:149601..164308-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067217 ID=TCONS_00067217|Name=TCONS_00067217|organism=Clytia hemisphaerica|type=transcript|length=14708bp|location=Sequence derived from alignment at scaffold_466:149601..164308- (Clytia hemisphaerica)
ACGTCAAATCAAGGCATATTTGGATGTTTGAAGGCAGAAAAGGTATTGGA
TTATTTTTCAACCTTAGGTTGTATAGACTAATTGCTAATAATCAGCCCGC
CCCCTTCCATCTTGCGCGTTTCCCCCACAATATTAGCCATTCCAGGGTAG
AATATCAAATTAAGTTGGGGGATTTGAAACCTAATCCATCTTAAAGAGCT
TCAAAAAACAAAAAAAATGAGGGGTCATACATCTCTCCAAAAAAAGCAGT
CCCGGAAACATAGCTGTCAACTCTCCCGCATTGAGCGGGAGACTCCCACA
TGTCAACAATTTCTCCCGTGTGAAGAAAATTCTGCCAAATCTCCCACATT
TTTGGGATTTTCTCCCGCATTTCCCGCATTTCTAAAAATTTTCCGATTTT
GGAAAAACCAAACGGCGAAATTTCTGGATTTTGAAAGATCGGAACGAAAA
ATTCCCCAATTTCCCGAAAAAAATTTCCAATAAAATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATTCCCCAATTT
CCCGAAAAAAATTTCCAATAAAATCGGATTTTACCAGAAAATTTCCCCGA
TTTCCCGATTTCCCGATTTTCCGATTTTGAAAAATCGGATTATCGGGGAA
AATTTTTTCGACTTGGAGCTCTCCCGCAATTTTGTGAGGCGAAGTTGACA
GCTATGCGGAAATATGGCAATTTTTGTACCCTGGAAAATAAAGGGGCACT
GTTTTGAGGTTTTGACAAACAACCACCCACGGCATGGCCCGAACATGTTC
AGGCCTCTTGATTAATACTTTTTTTAAATGGCCCGCGCGGGCCCACGCAG
TTTTGGACCATGTTCAGGCCAGATTTTTGAAAACTTGCTACGATTGCGCA
TGTAATTTCAGGACCCAATATTTATATTTTAAATTCCTTATTTTAGCAAA
CAAATTTAAAAATCTTCATCTTTATTCAAATACCAGGTGACCCACGAAAA
AGTTCAGACCTTTCCCGACGTCTTGAGGCCGAAAAAATGTCCCAAAGTGC
TTGGAAATTTGATATTTAGAAAGTAGATATCCTAACTTAAAATTTGAGCT
ATCACTTTTTAAATTTGACCAACTTGTTCTATGCTTCTAAAGTCAAAATT
CACTTTGCGGAAAGTGTAAAAAACACGTAAAAAAGGGGTATCAAATTTGG
TATTTTTAGACGTTTTTGAATTACAGTTTTTGAAAAAAATCTACCGGGTG
CGCCACAAAAAAGTTTCTCTCTTTAAAAGTAATTTTCTCGAAATTTAAAA
ATTTTAAAGGAACCATTCCTATTTTATTGGAAAGAAGAAAAATAAACTTA
AATTTTGATGGGTCATTTATTGAATTCGATTCATTAGATCAAAAGTTATG
CTCAATTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAGGCCAAGAAATCTGGTAGAATTCAT
AAAAATACATCAAATATGGGTTTCGAGGTAGATTCAGCCTTACATAGACT
TAATCCAGTCTAGAACCAAAAATCTGAGTAAAATTTCGGTAAAACTAAAT
CAAATTAATTTTGATGAAGATTTTGAACCCTTTCGACCCTTCAGTTTCAA
AATTTATATGTTTAGTTAATGAAAAATGCTCTTAATCATGTAAAGGCTAT
TGCGATTGCCAAATTTAAAGTAAAAATTTGATAGGTCGATTTTTAACGTT
TTCGAGCACTTTCTGAAAGTAACATTTTTATTCAATTGGATATAACTTTT
GATCTAATGAACCAAATTTAATAAATGACCCATCAAAATTTTAGTCTATC
TTTCTTCTTTCCAATGAAATAGGAATGGTTCTTTTGAAACTTTTAGATTT
CGAGAAAATTAGTTTCAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTAG
GAAAGCGCCAATTTTTATAAAAACTAGTCTTGTTTTAAACTAAACTACTT
TCAAAGGTGTTTTTATTAATTATTAATATCATAAAACTTGTTAAATAAGT
CAATTTGTAAGTGATTTTCTAATTGATTGCATTATTAAAAAGAATGATTT
GAATCTTACATAATATGGTCTTCTTTTTATTCTTTATCCCGTTCCCTTTT
CTCATGGTCTTCTCCTATTTGAAGCAGAAATTTTCTAGATCGTTTTTTGT
ACTGTTATACCGTGAGTGGTCCTAAATCCGACCCCCCAAATAACTGTTAT
GAAAAAAAATTCTATGTTTACAACATTCCCTCCCCAAGTTGAACGATAAA
CTATTGCAAGAACTCTCAAAACAAAACATCTAACAAGATGACTATTTTAT
GTCAAGATGTCAATTAATGTGATAAAAAAGTGGGAATTGTAAAAATAATT
ACTTCTTTATAGTGATAACCATTTTTTCTGAATCCGTTGTTGGTGTTTAA
AACGTTAACAAATGTTATTTGATTAAATCGTTTCAATGTACTATCAAATC
TCTCAGTTTAGTTGACACTTTGGTATCTTTGTTGCGTCACAGCGAAAGGT
TTGTTTTTAATTTAGTTTGTATCTTTGAAAGACCCAATCGGAATTAGGCA
GGGCTGTCAGATTTAGGACCACTCACGGTACAACTTTGTGAATCAAACTG
GTATTTGGAACTTTGAATTTGTCTAATGAAAATATTTAACAATGGATGAT
GATAAACCAGGAAAGGTAAATAAAATGAACATTGCCCGAGCAAATCCGTA
TCAATTGTAAATACATGGCCCGAACATGGTCCGAACAAAATGTTTGGGCC
GATTCAATAATACATTCACTCCTTACGCCAATACGCCAAAAGTAATTACT
GCCTCACGCCTAATATATTCGACGTGCTGTTCACTTTTTTGTGGCCCGAG
CATGGTCCGAACAGGCCCGAACATGTTCGGGCCATGCCGTGGGTCGTTTT
TAGTTTAGGTATAAACTTATTTCTTTTTTTATGATTTTTGTTGGCGAAAA
CGTTTAGAACATCCCAGACTTAGTCAAAAATTGCAAGAAAGTGAATTGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGCTGATTTACCGTCGTCCTCAGTTGGTCA
TGATCTAGTCAAATTAGAACCTTACCGTCTCCGTCGCTGAAAAACACACA
TACATAAACTCGGTATTATAGCGAGCAGAACGGTGGGATGTTCTAAACGT
TTTCGCCAACAAAAATCATAAAAAAAGAAATAAGTTTATACCTAAACTAG
GTCGTTTTGACAAAAGGTTGTAAACTTTAGTGGAAAATTCAACAACCTGC
GGCACCAAAATATGCTGCAAAAATTGAAAATCCAAGCTTTTGTATTGAGT
CAAGATATTCCAGATATCTTCATTTTGACCGCAGACTTTTATCAAATTCT
TTTTGTAATGGCTTGCTAACACTTACAAGAAAGAAATGAAAAGACATTTT
TACCTGCACCTACTATACCGGTTTCCTTTGTTATTTCAATCTGGAGCTAG
AAATTTTTCATTGGAGCTGTCAAGTTGAAGACCGCGGGCATGTTCCTTGA
ATGTTTTAATCGCAATGTAAAGTCTTCTTTTTTTTCTCTGCGTCTGGAAT
GTTTTGATCACAATGTAGAGTCTTCTTTTTCTTACTTTCGATTTTGTCGG
TCGCATACTGGACGTCTAATTTCGATACTGATTGCATCAACTTTTTTATC
AATATTTCAGACAAAGGAAACTGTATTGAGCTGATTTTTATATTAACGCT
TTCAAACCAGTTCAAACATACTCATTGTTTTGGGCAAGTATTTTTTGGAG
TGGCAGTGCCAGTGGAAGCGTTTTTTCTTACAAAGCTTTTTTGTCCACAG
GTAGCCATTTTTTTTTTTTTTTCGAAAAATCCGGCTTTTTCGTGTTTTTT
CGTGCAAAGTTGGATCTTTCGGATTTTACTCGTTCTTTTCTGGAATTTTT
TTTACACAGTACGGAAAATAGGTCAATGCAGATAACTACCAAAAGAAATT
CTCCAGGGGTTTGTTCTGTATGACTTTTCTGGGTTCAAAGACGTTCGGTC
GCCAACTGGGCAGGGGACTCTAATTATAGGCCAGCAGGCCCAATTGATAG
TTTGACAACAAATTTGTTTTGATAACTCCACCAAGTTTATCAATCATACT
TTCTGGCATAACATGTCACGATAACTTCTAGACGGTACTAATCGATAAAT
TCGATTATCGAAGTAATCAATAATGATCAAAGTAATCGATAATGATCGAA
GTAATCAAACAATCACTTATCGATTAACATTTGAATGTCGAGTACCAAAA
TTTCAAAAAATTGTGAGTATTCAATCACTTTCTTGACAACCCTTCGAAGA
CTTGAATAACTGTTTGAGTACTTTGATTGTTATTGATTACTTTCGATAAC
CAATTACTATTATATATCTTTAAGAAAAACCAACAGAACTGACCTAAAAC
CAAAGCACAAAAAGAAGCCCCGGCTTAAAGATTGACCCCCTTATTTCCCA
GCCATTTCCCTTGCCATTTTGTGTGTAATTTAATGTAATGTATATATTCT
TTATTAAAGTAAAAAAAAGTGTACAAATCTGTACTAGCTTTAAAGCTAAT
AGAGTTCGAGTGCCTATTTACAAAATCCATTCATCTTCATCTGTATACAT
CATACCTGTTGATGCCCAATCGCTGACGATTTCTTCTGTAGAGTCATTAG
TTTTATAATTTGAAAACTTGTTTGGTTTTGTAATTTTTTAACGACGCCTA
GTTTTGTTCTTGGGCTTCCTCTTACGCGCCAGTTGAAGTCTTTATTGTTT
TTGTGTTTGTTAAGTTTCTTTGCTTGTTCGTGCATCTCCTTTATCTTTTT
CCGTTCGTTGATTGTGAAATCTTCCGTTATACTTACCTGAAAGAAACAAG
TTTCTTTCAGCATGTGTAAATTTTTCATGATAAGATCTTTGTCATGCTGA
CTTTGGAGGGCGACTTTAAGAGTACGGCCATTCTTTGTTTTTATGTTTCC
TAATCTGTGGTGAGTAACATTTATTTCTGGAACATTGATGTCCTCCAGGA
GTTCTTGGAACCAAATTTTGTCATATTTTACTCCATTTTCTTCTTCTTCC
TTATCTGGGCCTGAATATTCGAGAAACTCGTGAACAATGATATTTAGTTT
TCTGGAGTCTAAGTCTCTCTCTCTCTCTTTTTTTTTTAGCTTCAAAATAA
AAAATAATTTGACACCTAAAAGCTTTCACACCTTGAGCATGATGACATTT
CTGACAGTAAGGTGTCACAAAAATTGACACTTTTCCAATACAAATTAATT
CTTTATGTCAAATATATCTTTTAAACCGTAATTTATTGAATATTTAGGAT
GATAAGCATTTTAGACTTAGGGAACTTTTTTGTAAATTGTTAGAATACAA
TAGCTATTTATAAAAACAAATGAAATTTTCGGTTTTTGCTCACTTTGGGC
ATGTTAAGTGACATCATCAAAAATATTTTTTGTTAAAAGTTACCTAAGAT
CTCGTGTGCCAAATTTCATCCAAAATGACCAACTAGATCAAAAGTTAAGG
GGTGGTACAGGAAAAGCCCCCCCTAGTTTTGAACCCCCCCTAAAAGCCTA
GGTTGAATAGGGTTAAAGTATTCTTTTAAGTGTTCTAATGATCAGTTTAT
GAAATATTCATCCAAAGAAATTCTTATAAAAGTCGCTAAAGCATTTTTTA
CCCAGGGTTGACTTTTTTTTGTATTTTGGTCAAGGGTCGGTTTTTTCCAA
GGGTCAAGGGTCACAGCTGTATTCCTAAGCACACGTCATGAACGCCTTAA
TCTCCAACTAAAAGTTATCTTGCAATCGCGGCACGTGCCTTTGTGGATCC
AGGCTTTAGGCTATTTCTTTACATTTGCGGTTGGATTCCAGGATTGCGCG
ATTGCTTGAGGAATTTCAAAGTTTGAGGATTTTGGTGGGTAAATGAAAAA
AAGGTTCCAATTTTAGCTAACGACCAATCGACTGACCCATTTTTCAAAGC
TTCTAGGACACCTAAACCAAACAATCTGGCCATATCTTTTTCGTCTTCCA
ATACTTGATGTACTCCGAAAACTAATTGAGAATAAAGTTAGAGGGCATCA
ACAATACCATCTTTATCATCCTTAGGGCTTTTGATGCGCAAGGCGACCAT
CAGTTAGTTGAAGCACTTTGATTTGTGAAGCGTCTTTAACTTTACGTCAC
CAGGGATTTTTCTAAGCACTTTTTTACTATCGTATACTGGCAAAAATACT
CAATCCAAGATTGAGTTATGAAACTCAATCCGAAATATAAAAAAAAAAAG
TTTCAAAGCAGTTTTCTCAGAAACGCCAATTTTTTGTTTTTAATCAGTAT
AGAGTAAAGACAACACTACTGGGTCAGAAACCGTTCGCAATGAATGGAAT
GCTTTTGCATCCTTTGTGAACGCTCTACAAAGAAGTTTTATTGAAACTGT
TCGCGACGAATGCTTATGCTTTTTAACCCGTTTGTGACGAACGGTCTAAA
AAGAAAACCGTTTGTGAAGAACGCTTACGANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACGCGAAGAATGCTTTT
CCGTTTGCCGCGAATGCTTTTAAAGAATCATTCAAAAAACCGTTCGTCAC
AAACGGTTTAACATACGCAACAAATGGATTTAAATGGGAAATGTTTTCTA
AGAACATTTATTTCGCATTTACTTGGATTTTTGGAACGGGGAATGAATTT
ACTTATTGAGTTACTTCTTTCATTAAAGTTTTTTTCAAAATGATAACTTT
ATAGAAGGGGTCAAAATTGAAATAAAAGTCATTACAGATTTACAGCAAAA
TTGCTTTTAAAAAATATTCGGGGTCGATGAGGTATAAGGAAACTTCAGGA
ACTTTTCTTTTCAAATCAAATCTTCATTCCGTCTAGAAAGTCAAAACATT
TGAAAAACAAAATCAGACTATTTAAAGTTAAAAGAAAAACTTTGAAGATA
CCCCTGTCCTACCACGAATAATCTTTTAGAGAAAACCTGTATTAGAATAA
CCTAATAAAAAATGAAGTTTGGTATACCCCTGTCCCACTCATTGAAATTC
TTTATTATTATTTTCAACAATGCAGGACTGCAATCGGACATTATGTCTGA
CTGAAATCAAATCCAGTCAATAAAACTTAAAATCCTCTCGGTAATACATT
CGTCGGAATTTTTTCAACTAGCAGAATATATTTTCTAACCTCGTTAAGAA
GCTAGCTTTTGAAAGTTACACGTAAAGCTATAGATAAGAGTGACCTTGGG
ACAATACTCGCAACAGTAATAGAGAAAGTGGTTAGTTTGGTAAAAGTGAA
CTTAGAAACACTCTTAAAAGTTACAAAGAATAAAGTGATTTGATAAAAGT
GATCTTAAAAACACTCTTAAAAGTTACAAAAAAGCGATTTGATCAAAGCG
ATCTTAGATACACTCTTCAAAGTTACGAAGAAAACGATTCGATAAAATCG
ATCTTAGAAAACACTCATAAAAGTTACGAAAAATTACGAAAAAGCGATTT
GATTAAAGCGATCCTAGAAACACTCTCAAAAGTTTCGAAAAAAGGGATTC
GATAAAAGTGATCTTTGAAACACTCTTAAAAGTTACGAAGAAAGCGATTT
GATAAAAGTGATCTTAGAAACACTCTTAAAAGTTTTGAAAAAAGCGATTC
GATAAAAGTGATATTTGAAACACTCTTAAAAGTTACGAAGAAAGCGATTT
GATAAAAGTGATCTTTGAAACACGCATAATTCGATAAAGAATAGAGTAAG
AGACAGGGGTGTATGTGAGATTTGTTCTTGATGAAATGAATTTTTAAGAG
AATCCTCATTATTACTTGTTAAATCTTTTGTAGATTTTTTCATAAAAAAA
ACAGATTTGTTGTTATTCCTTCTTTCGCTTTTGCCACCAAGGAGAAAATG
AAAAATGAAGAAGCTTTTGTTTTCAGATTGTCTTTTTAATCTGCCATGTA
GTGTTATAGAATTCCTTAAAGAAAGACACATTCTCCTACGAAGAGGCTTC
AAGAAAATGATGTAAAAAAAAAGTATGTCATTTTATCTTAACAATTTCGT
AAACTACGTCACAACCACGGAGCGCTGACTTTTAGTTTTATGACTTGTTC
TCACCAAACCAAATTTTCCATGATAAAAAGAAAGTTGTTATTGTAAACTT
TGAACAATGTTGTTGAACTGTTCAATATTTTCATACATAGCTTCTGTGGA
TGCTATATATTTCCAAAATATTACACAGCAAATTTGGTGACAATTGAGCA
TCTTCTTTTTGACGTTATATATATCACAAAATAAAAGTTAACACTTTTGA
AAAAAACTACCTAGAAACCAGATTCATGAGCTTTTAATATGTTAGAACTG
GTTAGAATTATGCTGGGAAACAAGTAATATTTTAGCAGTGAACGGTTAAT
AAACCATTTGTTTTGACGCAATCTCATACATCCAATATGAAAAATATTGG
GTGTGCAAAAAAAGATATTGGACAAGGCTTTGCCGAGGCATGTTTGATTT
GGCTTTGTCCAATAACTGCTTAATATTATCGTGATAGATAAAATGCATCA
AGCATCTGCTTTATTTTATTGTTTTAAAATATATGCTCTTTTGCTGAACA
CTTTTTACACATCAAAATTCATAAAGAGGACAGGAGTCGATCTCCATCAT
TTTTAATCCCCCAGGCTAACTTCTACAGAAGGCCTTTTATATTTAATGAA
AGATCTTTTTAGTATCGGTCAGTAAAAAAAAACACAAAAATGTCGGATGA
GAAATGGCTAGAGGATAGTGGAAATTTGGAACAGAAAGAAGAAGAACCAT
TCCCATATGCGGAAGGTGAACATGAAGAAATGCCAGATGAAACTGTTGAA
GAGGACCCGGTATGACATTATATGTTTTACAATGTTCTTTTGCTTAGTTG
AACAATATTTTTTAACAAAAAATCAGTGCATGGAGGACAGGATTTGCAAA
GAAATTAAATTGGCATGGAATTGATGTTTTGTGCAATTTTTTAGGTTTTT
GTAGAAAGATATAATAATAACTAACGGAAATAGATTGAATTCTTACTTTC
TTTATATACATTATTCTTCAAGGTGAATAGGCTCCAAGCCATGTGTTCAA
GTTGTTATCATTAGTAGTCTAAGAACTATGGTTATTTTTTGATAATGCCC
CTTAATTGTTTTTTATTTCTTTAGGAAATAGAGGCTATCAAAGCCAGAGT
CAAAGAAATGGAGGAAGAAGCAGCAAAATTGAAGGAAATGCAAAAAGAAG
CAGAAGACTCACTAATGAGCCCATCTTCTCATGGTAGTCAAGGCAACACT
TTTTCTTAAATCCTTGAATTATACGCAATTTAAAAATCTTGAAGTTAGTC
TTCTACTAGGTTTTTAAAAAACATGAGGTTCTGCAGGGTTCTGGTAGAAA
TCAAAATTTTATCCATCTGAACTTTTCATCATCATTGGAGAGAAAAATTG
CTAACTTAAATTTTGAGCTATCGCGCACATTAAATTTTGGTGTCCTGGCT
CAAAATTAAATTAAGAAAAAAGAAAAGAAATTCTTTAAAAATGAAAGAAC
TTCATGTTTGAGTAAAAGTGTGTACCTTAATCGTATTAATGTTCTGGTCA
TTTATTTATGCGCCTGTAATTTTCACGCACTTCATGAAATAGGATATTTG
CGCACGCTTTAATTTTTAGGCATCTTGTAATTTGTGAGAATTTTTGGTAA
CAACTAACGTAAAGAGGGCAAAAATACAAAGAAGTTTTAATTCCTAAATC
TATTCATCATTACTCTAGGCTATGATCTTTAAATATAAATATTGTATACT
AGGAGCAAGTCCTGCTGCATCTAGTGAAGCTAAAGGTGATATTGATAGTC
GATCGGTGTATGTTGGCAATGTAAGTTAAATTATTTCAACAAATTATTTC
AATGACAAATCTATTTGACAACGTTTCTCATTATTTTTTCAATTTATTAA
TTAACCCATTACAGCCTTGAATAGAATTAGAATTGAATAGACATCCTCCT
CAAATTGAACATTCGCTCTAACATTCTCTAGCCAAAGTGTGTATCATTTC
AGGTTGATTACTCAGCAACTGCGACAGAACTAGAACAACACTTTCACGGA
TGTGGATCTGTAAACCGAGTGACCATTCTTTGTGATAAGTTCAGTGGTCA
TCCAAAAGGGTAAGAAGTATACTTTCTAAGGATACAGGGAATGGTTTGAT
GGGGATATTAAATCACTCTGATTCTAAGCTGCCGATGGCCTATCAAACTT
TCTTTTAACTATATGGTACCTATATCTACCTCTTAGTTGCTTTTTACAAA
TCATCTTTAAGAATTACTTTAGAAAAAAAAAACAGAGAGAAATGTTACGA
CAAGATGGGCTGAACACGAAAATGTAAATCACAATTCTGAGCCCGCAAAA
CATTTAAAGGAAAACCCCACCCACCATTTCCAATGGAGATGCATTTTAAA
AGCTCANTGAGCCCATCTTCTCATGGTAGTCAAGGCAACACTTTTTCTTA
AATCCTTGAATTATACGCAATTTAAAAATCTTGAAGTTAGTCTTCTACTG
GGTTTTTACCAACATGAGGTTCTACAGGGTTCTGGTAGAAATCAAAATTT
TATCCATCTGAACTTTTCATCATCATTGGAGAGAAAAATTGCTAACTTAA
ATTTTGAGCTATCACGCACATTAAATTTTGGTGTCCTGGCTCAAAATTAA
ATTAAGAAAAAAGAAAAGAAATTCTTTAAAAATGAAAGAACTTCATGTTT
GAGTAAAAGTGTGTACCTTAATCTTATTAATGTTCTCGTCATTTATTTAT
GCGCCTGTAATTTTCACGCACTTCATGAAATAGGATATTTGCGCACGCTT
TAATTTTTAGGCATCTTGTAATTTGTGAGAATTTTTGGTAACAACTAACG
TAAAGAGGGCAAAAATACAAAGAAGTTTTAATTCCTAAATCTATTCATCA
TTACTCTAGGCTATGATCTTTAAATATAAATATTGTATACTAGGAGCAAG
TCCTGCTGCATCTAGTGAAGCTAAAGGTGATATTGATAGTCGATCGGTGT
ATGTTGGCAATGTAAGTTAAATTATTTCAACAAATTATTTCAATGACAAA
TCTATTTGACAACGTTTCTCATTATTTTTTCAATTTATTAATTAACCCAT
TACAGCCTTGAATAGAATTAGAATTGAATAGACATCCTCCTCAAATTGAA
CATTCGCTCTAACATTCTCTAGCCAAAGTGTGTATCATTTCAGGTTGATT
ACTCAGCAACTGCGACAGAATTAGAACAACACTTTCACGGATGTGGATCT
GTAAACCGAGTGACCATTCTTTGTGATAAGTTCAGTGGTCACCCAAAAGG
GTAAGAAGTATACTTTCTAAGGATACAGGGAATGGTTTGATGGGGATATT
AAATCACTCTGATTCTAAGCTGCTGATGGCCTATCAAACTTTCTTTTAAC
TATATGGTACCTATATTTACCTCTTAGTTGCTTTTTACAAATCATCTTAA
AGAATTACTTTAGAAATAACTTTGTTCTTCCTTTTCATATTCATTGAGTT
TACTTAGTCCTCTTCAGTCAGTGATAATCAATTAAAGATGTATTGTTTAA
TTAGGCTTGCTATGTCAACAACCTGTCAGCTATCCAAATCCTTTTAATTT
AGATTTGCTTTTGTGGAGTTTGCAGACAAAGAGAGTGTGGAAAATTCAGT
AACGCTATCCGACACTCTTTTCAAAGGAAGACAAATCAAGGTAAAAAAAT
TGAATAAATTGAGTGATTTAGAAACTGTCCCATATAGTCCTTTAAATTTG
GTTCATCATAAAAAATGATACAAATGATTTCAAAATAAGTAACATTGTTT
GTTCATTTTAAAAGGTGACACCAAAACGAACCAATATCCCAGGTATTTCA
ACGACAAATCGAGGGTTCAGAGCACGAGGACGCGGGCGTGGTAGAGGAGG
CTTTGGATACAGCCCAAGAAGAGGACGAGGAGCATACAGGTAAACTTTCT
TAACTCTAATACTATATTTTGTACTCTATAAGATTTTTAGGGGGAAAAAA
ATGCACTAAAAAAGAGCCTTTTAGGGGTCCTTAAAACCTACTGTTTACTT
CTTCATCCTCTGTAAAACTCGATTTCCAAAGGAAATAGGTGGCTTGGGAA
AAGTGCTTGGAGGAATCACTGGGCATAAGTTTGGCCAGAAACCATTGAAC
ATTTTTACCTTGGCTTATTATGTTAATTCTACCCTTTTTTCAAATCTTAG
ATCTAGACGTGCATCTCATTTTTCACCATACTGAGAGGTAAGTTACCATT
TCTTTATTCCTTTAAATATTATTTCTAATCTACTATGGAATCCTGCTATT
GCATCTATTTTTCTCATTATTACGCCTTAGAAAAAATGAAGACCCCCAGA
AAAAAAAGAAAACAAAAGATGAGAAAAAAGAGCGAAAAGATGATAAAAAG
AACAAAAAAAAGAACAAAAAAAAGAACTCACAAAAGAGAAAAGAATAAAA
AGAATGAAAATTAATTGGGGCATTTAAGAAAAAGAGGGTATACCACTATG
CCTTGCGAAATTAAGTGAAATAGAGAATTACAGGAAATTTGGTAGGCTCC
TTATTAAGTCAACGATAAGTTGGATTGATGTTGATTGATTGCGGCTATTG
ATTGGACTGGATTCGGACTGGTTGCTTCAATATTCCTTGTTGGTTGAGCT
TCGCTAGCCATGATTCACTTGCTGATTTTAGTGGGTTTGTTTTGATTCAG
CAACAATTGTATGTCAAGTGTTTACAGAGGCAATTATATGGCTACTTTAA
AAAATATTTTTTTAATGACTTAGTTATTTTTATTCAAAAGAATTTTAACG
GTTGTACTTTTCTCTTAATTTCCTTTGAATTTGAACTTTTTTCATGTGAA
GATTTTTAAACAAAGTGACTTTTTAGTAGCTTTATGTGTAAGGGTATTTT
ATTATGTCCGTTTTGGAATTCGGTTATTTTTCTTGTGTATAAGTTTATTT
TACTAATAACCATTTTTCTTGCTAGATAGTTTAAAACAAAAGATTTCTTT
GAATTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041991XLOC_041991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067217-exon-scaffold_466-1575043694:164267..164308TCONS_00067217-exon-scaffold_466-1575043694:164267..164308Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:153800..153946TCONS_00067217-exon-scaffold_466-1575043694:153800..153946Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:153376..153484TCONS_00067217-exon-scaffold_466-1575043694:153376..153484Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:151598..151665TCONS_00067217-exon-scaffold_466-1575043694:151598..151665Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:151309..151415TCONS_00067217-exon-scaffold_466-1575043694:151309..151415Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:150919..151006TCONS_00067217-exon-scaffold_466-1575043694:150919..151006Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:150670..150794TCONS_00067217-exon-scaffold_466-1575043694:150670..150794Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:150372..150408TCONS_00067217-exon-scaffold_466-1575043694:150372..150408Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1575043694:149601..150278TCONS_00067217-exon-scaffold_466-1575043694:149601..150278Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:164267..164308TCONS_00067217-exon-scaffold_466-1510915933:164267..164308Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:153800..153946TCONS_00067217-exon-scaffold_466-1510915933:153800..153946Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:153376..153484TCONS_00067217-exon-scaffold_466-1510915933:153376..153484Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:151598..151665TCONS_00067217-exon-scaffold_466-1510915933:151598..151665Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:151309..151415TCONS_00067217-exon-scaffold_466-1510915933:151309..151415Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:150919..151006TCONS_00067217-exon-scaffold_466-1510915933:150919..151006Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:150670..150794TCONS_00067217-exon-scaffold_466-1510915933:150670..150794Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:150372..150408TCONS_00067217-exon-scaffold_466-1510915933:150372..150408Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1510915933:149601..150278TCONS_00067217-exon-scaffold_466-1510915933:149601..150278Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:164267..164308TCONS_00067217-exon-scaffold_466-1491911889:164267..164308Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:153800..153946TCONS_00067217-exon-scaffold_466-1491911889:153800..153946Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:153376..153484TCONS_00067217-exon-scaffold_466-1491911889:153376..153484Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:151598..151665TCONS_00067217-exon-scaffold_466-1491911889:151598..151665Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:151309..151415TCONS_00067217-exon-scaffold_466-1491911889:151309..151415Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:150919..151006TCONS_00067217-exon-scaffold_466-1491911889:150919..151006Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:150670..150794TCONS_00067217-exon-scaffold_466-1491911889:150670..150794Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:150372..150408TCONS_00067217-exon-scaffold_466-1491911889:150372..150408Clytia hemisphaericaexon
TCONS_00067217-exon-scaffold_466-1491911889:149601..150278TCONS_00067217-exon-scaffold_466-1491911889:149601..150278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:149601..164308 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.1742	39.5304	73.212	79.6546	40.4202	32.4161	49.0404	49.8992	31.0458	33.2953	20.5445	19.7342	8.5452	9.10571	21.6749	29.554	43.2898	36.0691	4.85658	4.58544	28.0717	25.4382	27.1983	25.7511	18.326	19.1215	22.0381	13.9593	21.357	19.4539
Blast
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BLAST of TCONS_00067217 vs. Swiss-Prot (Human)
Match: PABP2 (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.081e-45
Identity = 99/150 (66.00%), Postives = 117/150 (78.00%), Query Frame = 1 
Query:  163 PDETVEEDPEIEAIKARVXXXXXXXXXXXXXXXXXXD--SLMXXXXXXXXXXXXXXXKGDIDSRSVYVGNVDYSATATELEQHFHGCGSVNRVTILCDKFSGHPKGFAFVEFADKESVENSVTLSDTLFKGRQIKVTPKRTNIPGISTTN 606
            P +   EDPE+EAIKARV+EMEEEA KLKE+Q E E   ++  P  +      S E K + D+RS+YVGNVDY ATA ELE HFHGCGSVNRVTILCDKFSGHPKGFA++EF+DKESV  S+ L ++LF+GRQIKV PKRTN PGISTT+
Sbjct:  109 PGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 258
The following BLAST results are available for this feature:
BLAST of TCONS_00067217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PABP21.081e-4566.00Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
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