TCONS_00006592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006592
Unique NameTCONS_00006592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006592 ID=TCONS_00006592|Name=TCONS_00006592|organism=Clytia hemisphaerica|type=transcript|length=588bp
GGCAGACAAAGCATGAAAATGTTACCTCCTCCTGGTATAACGGTGGACTG
AAGTTCTAAAGCTTATCCAAGGATTATCAAATGAAAGTAATGTGTGGAGA
CTTTTTGTAACCCAGACGATTGTAACCCTGAATTGCCAGTGGAATGGAGA
TTAAAGAGcaaacacaaagaaaaacatCAAAGATGAATTTTGAGCATGAT
gtagtttatttatttatcaacATGACTAAGGTGGATATGGTTAAGATTTT
GAATCAACTTAATCTTAAGTTCTTAGTCCCTTTCATAACTATTATAGATA
TGGTTTGTTAGATGGTTGTGGACCTGGCAAGATTTATTTCACTATGTTGT
AACACTCTGCATAACCGAAGAACTTTCACgggcaagtatttttttatctt
cttatcaATTTGAGCGGTTAACTTTTTAGCAAAACCTACATgtatttcaa
actttaaaaatgaCTTCAGGGAGGGGGTGTTTGATTGAAATAATCCTTCT
GGagattttaaaaacctttcGGCTATATTGAGGATGGTGGTACACTTGAA
GAACCTTTAGATAAACTATTTCTAACTATATAAGATCA
Run BLAST on NCBI

transcript from alignment at sc0000069:481743..482530+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006592 ID=TCONS_00006592|Name=TCONS_00006592|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at sc0000069:481743..482530+ (Clytia hemisphaerica)
GGCAGACAAAGCATGAAAATGTTACCTCCTCCTGGTATAACGGTGGACTG
AAGTTCTAAAGCTTATCCAAGGATTATCAAATGAAAGTAATGTAAGTTTA
TTGCATGTTTTCCCTTAGTGCAACCTGAAGTGCATTTATTTATCAATTTC
AATtactttgaattaaaaaaattctgtaatttttttggaCCCTTGGCACA
AGACAAGGGTACCTATGCAAGAATTGTAACCCAAAATATTTACAAAGCTT
TCGGGATTTGATATAATATTTTGCTATTGCCCTTTTTTTAGGTGTGGAGA
CTTTTTGTAACCCAGACGATTGTAACCCTGAATTGCCAGTGGAATGGAGA
TTAAAGAGcaaacacaaagaaaaacatCAAAGATGAATTTTGAGCATGAT
gtagtttatttatttatcaacATGACTAAGGTGGATATGGTTAAGATTTT
GAATCAACTTAATCTTAAGTTCTTAGTCCCTTTCATAACTATTATAGATA
TGGTTTGTTAGATGGTTGTGGACCTGGCAAGATTTATTTCACTATGTTGT
AACACTCTGCATAACCGAAGAACTTTCACgggcaagtatttttttatctt
cttatcaATTTGAGCGGTTAACTTTTTAGCAAAACCTACATgtatttcaa
actttaaaaatgaCTTCAGGGAGGGGGTGTTTGATTGAAATAATCCTTCT
GGagattttaaaaacctttcGGCTATATTGAGGATGGTGGTACACTTGAA
GAACCTTTAGATAAACTATTTCTAACTATATAAGATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003726XLOC_003726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006592-exon-sc0000069-1491911889:481743..481833TCONS_00006592-exon-sc0000069-1491911889:481743..481833Clytia hemisphaericaexon
TCONS_00006592-exon-sc0000069-1510915933:481743..481833TCONS_00006592-exon-sc0000069-1510915933:481743..481833Clytia hemisphaericaexon
TCONS_00006592-exon-sc0000069-1575043694:481743..481833TCONS_00006592-exon-sc0000069-1575043694:481743..481833Clytia hemisphaericaexon
TCONS_00006592-exon-sc0000069-1491911889:482034..482530TCONS_00006592-exon-sc0000069-1491911889:482034..482530Clytia hemisphaericaexon
TCONS_00006592-exon-sc0000069-1510915933:482034..482530TCONS_00006592-exon-sc0000069-1510915933:482034..482530Clytia hemisphaericaexon
TCONS_00006592-exon-sc0000069-1575043694:482034..482530TCONS_00006592-exon-sc0000069-1575043694:482034..482530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:481743..482530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.36144	3.93144	1.69201	2.3724	0.126237	0	0	0	0.0788824	0.195417	0.474191	0.249372	0	0	0	0	0	0	0	0	0.0905063	0	1.87587	1.57542	0.201007	0	0.128356	0	0.687627	0.251576
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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