TCONS_00067139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067139
Unique NameTCONS_00067139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067139 ID=TCONS_00067139|Name=TCONS_00067139|organism=Clytia hemisphaerica|type=transcript|length=1494bp
CATTAATGTGTTAGAAATGCAGGCAATACTCAATACAATCACTAAGTTta
caaaatacataaaaaattcaCACATTAAAGTGTACTGTGATAATGTTACT
GCTGTTTCAACTATCAATAAAATGGGAACCAGTCACAGCACTAATTGTAA
TAAATTAGGACAACTTATTTGGGAATACTGTATTGAAAATTGTATATGGA
TTACCTGTACATTCATTCCTGGAAAGGAGAATATTGAAGCTGATGCCCTG
TCTAGAAAGTTGTATAAAAATGCTGAAGCAATGCTTAATAGGGAGCTTTT
CAATGAAGGCATTAAACAGTTAAATTTCATGCCTGACTTGGACTGTTTTG
CAAGCCCCTCAAATGCCCAAATTGATAGATTTGTATGTAGATTCCCAAAG
AAGAACTCCTTTGCCACCGATGCTTTTACTGTCGACTGGTCAAAATATAA
GTGTTATTTATTTCCACCTTTTAGCCTAATCGGAAGAGTGCTACAAAAGA
TCAGAAGGGACAAGCCAAGAAGAGTCTTAATGGTTGTTCCTCGTTGGCCA
ACTCAAGCTTGGTATCCTATGCTAGAACGTCTTATGATTCGTGTCTATTG
TCAGGGCTGCATACATAGGTCTGCTGGGTCGTCgaatttgaaaacaaaga
ttGATGTAAAGAAGATACTAGACTCAGCAGGTTGGTCATGTGAATCGACC
TTTGCAAGGTTTTACGACAGACAAATCGAAACATCCATTGGTACTGCTAT
GATTGATACATGAACATTATTAAATGAATATGTTGATAAATGAACATTTT
GAATGACTTTAAACATTTGCGTTAtgaattatattatattttccaGTCAC
TTTGTGGAATAGTAACCTTACATCCCATAATAAGCGATTACATTTGAGTT
AAAAACCAAATATTAGTTTATGAAAAAGTCAATTCTTTTCGAAATTGTGT
TATTCTctgtaaaattctttaaaatataaatatacatGCAAGGATAAACA
AATCCTTTGTTCAGTGTCTCTTATATTTAATAAGTCACATGTTATTCCGA
GGCTACGAAGTCTCACCTAGCTCTCTAGAGACCTGGAAACTAGAATGCCG
TTGAATTTACGAATTCAACGAGACTTACCTGTAAGTTGAAGTTGAATGAG
AATTCTACAAATTCTAGTTTCCAGGTAAATAGGGAGTTAGGTGCCCACCC
ACCACATTACCCAGCACCCTATTTCCGGAAAAACATGAGACTGTACTACT
TCGAAAAATGATTCACTGTGCCGCCCACGCTCGCTATATCTCACCTAACT
CCCTATTTACCTGGAAACTAGAATTTGTAGAATTCTCATTCAACTTCAAC
TTACAGGTAAGTCTCGTTGAATTCGTAAAATCTTTGGTTCAGTCAAATTG
AACGAGTCAATATGCAACTTTAGTCAAatttacattctggtctgtaaaat
taaGCCatctgaagatgagtaaaattgaCTATAACTACCTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00067139-protein

>TCONS_00067139-protein ID=TCONS_00067139-protein|Name=TCONS_00067139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
INVLEMQAILNTITKFTKYIKNSHIKVYCDNVTAVSTINKMGTSHSTNCN
KLGQLIWEYCIENCIWITCTFIPGKENIEADALSRKLYKNAEAMLNRELF
NEGIKQLNFMPDLDCFASPSNAQIDRFVCRFPKKNSFATDAFTVDWSKYK
CYLFPPFSLIGRVLQKIRRDKPRRVLMVVPRWPTQAWYPMLERLMIRVYC
QGCIHRSAGSSNLKTKIDVKKILDSAGWSCESTFARFYDRQIETSIGTAM
IDT
Run BLAST on NCBI

transcript from alignment at scaffold_464:168992..171529+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067139 ID=TCONS_00067139|Name=TCONS_00067139|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at scaffold_464:168992..171529+ (Clytia hemisphaerica)
CATTAATGTGTTAGAAATGCAGGCAATACTCAATACAATCACTAAGTTta
caaaatacataaaaaattcaCACATTAAAGTGTACTGTGATAATGTTACT
GCTGTTTCAACTATCAATAAAATGGGAACCAGTCACAGCACTAATTGTAA
TAAATTAGGACAACTTATTTGGGAATACTGTATTGAAAATTGTATATGGA
TTACCTGTACATTCATTCCTGGAAAGGAGAATATTGAAGCTGATGCCCTG
TCTAGAAAGTTGTATAAAAATGCTGAAGCAATGCTTAATAGGGAGCTTTT
CAATGAAGGCATTAAACAGTTAAATTTCATGCCTGACTTGGACTGTTTTG
CAAGCCCCTCAAATGCCCAAATTGATAGATTTGTATGTAGATTCCCAAAG
AAGAACTCCTTTGCCACCGATGCTTTTACTGTCGACTGGTCAAAATATAA
GTGTTATTTATTTCCACCTTTTAGCCTAATCGGAAGAGTGCTACAAAAGA
TCAGAAGGGACAAGCCAAGAAGAGTCTTAATGGTTGTTCCTCGTTGGCCA
ACTCAAGCTTGGTATCCTATGCTAGAACGTCTTATGATTCGTGTCTATTG
TCAGGGCTGCATACATAGGTATGAAGATTTCACCCGAAGTGGTTGATGTA
ATCATGACAAGTTGGAGGAAAAACACATTGGCCAAATATAAACCCATTCT
TAGAAAGTGGTATACGTTTTGCTTAgaaaataaagtaaacattGTCCATC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATCAAATCTGAAAGC
CTACCTATCTAAAACTATAAATAATAGAACCTCTTACCCTTTGTTTATCA
GTTACATAAAACCATTCAAGCCTGTTTCAAAAGATATAGTTGCAAGATGG
TGCAAGGATTTTTTACAGTTATCGGGTGTTGATATCAAGAGATATACTTC
TCATTCTTGCAGGTCTGCTGGGTCGTCgaatttgaaaacaaagattGATG
TAAAGAAGATACTAGACTCAGCAGGTTGGTCATGTGAATCGACCTTTGCA
AGGTTTTACGACAGACAAATCGAAACATCCATTGGTACTGCTATGATTGA
TACATGAACATTATTAAATGAATATGTTGATAAATGAACATTTTGAATGA
CTTTAAACATTTGCGTTAtgaattatattatattttccaGTCACTTTGTG
GAATAGTAACCTTACATCCCATAATAAGCGATTACATTTGAGTTAAAAAC
CAAATATTAGTTTATGAAAAAGTCAATTCTTTTCGAAATTGTGTTATTCT
ctgtaaaattctttaaaatataaatatacatGCAAGGATAAACAAATCCT
TTGTTCAGTGTCTCTTATATTTAATAAGTCACATGTTATTCCGAGGCTAC
GAAGTCTCACCTAGCTCTCTAGAGACCTGGAAACTAGAATGCCGTTGAAT
TTACGAATTCAACGAGACTTACCTGTAAGTTGAAGTTGAATGAGAATTCT
ACAAATTCTAGTTTCCAGGTAAATAGGGAGTTAGGTGCCCACCCACCACA
TTACCCAGCACCCTATTTCCGGAAAAACATGAGACTGTACTACTTCGAAA
AATGATTCACTGTGCCGCCCACGCTCGCTATATCTCACCTAACTCCCTAT
TTACCTGGAAACTAGAATTTGTAGAATTCTCATTCAACTTCAACTTACAG
GTAAGTCTCGTTGAATTCGTAAAATCTTTGGTTCAGTCAAATTGAACGAG
TCAATATGCAACTTTAGTCAAatttacattctggtctgtaaaattaaGCC
atctgaagatgagtaaaattgaCTATAACTACCTTGAT

Coding sequence (CDS) from alignment at scaffold_464:168992..171529+

>TCONS_00067139 ID=TCONS_00067139|Name=TCONS_00067139|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_464:168992..171529+ (Clytia hemisphaerica)
ATTAATGTGTTAGAAATGCAGGCAATACTCAATACAATCACTAAGTTtac
aaaatacataaaaaattcaCACATTAAAGTGTACTGTGATAATGTTACTG
CTGTTTCAACTATCAATAAAATGGGAACCAGTCACAGCACTAATTGTAAT
AAATTAGGACAACTTATTTGGGAATACTGTATTGAAAATTGTATATGGAT
TACCTGTACATTCATTCCTGGAAAGGAGAATATTGAAGCTGATGCCCTGT
CTAGAAAGTTGTATAAAAATGCTGAAGCAATGCTTAATAGGGAGCTTTTC
AATGAAGGCATTAAACAGTTAAATTTCATGCCTGACTTGGACTGTTTTGC
AAGCCCCTCAAATGCCCAAATTGATAGATTTGTATGTAGATTCCCAAAGA
AGAACTCCTTTGCCACCGATGCTTTTACTGTCGACTGGTCAAAATATAAG
TGTTATTTATTTCCACCTTTTAGCCTAATCGGAAGAGTGCTACAAAAGAT
CAGAAGGGACAAGCCAAGAAGAGTCTTAATGGTTGTTCCTCGTTGGCCAA
CTCAAGCTTGGTATCCTATGCTAGAACGTCTTATGATTCGTGTCTATTGT
CAGGGCTGCATACATAGGTCTGCTGGGTCGTCgaatttgaaaacaaagat
tGATGTAAAGAAGATACTAGACTCAGCAGGTTGGTCATGTGAATCGACCT
TTGCAAGGTTTTACGACAGACAAATCGAAACATCCATTGGTACTGCTATG
ATTGATACATGAATTAATGTGTTAGAAATGCAGGCAATACTCAATACAAT
CACTAAGTTtacaaaatacataaaaaattcaCACATTAAAGTGTACTGTG
ATAATGTTACTGCTGTTTCAACTATCAATAAAATGGGAACCAGTCACAGC
ACTAATTGTAATAAATTAGGACAACTTATTTGGGAATACTGTATTGAAAA
TTGTATATGGATTACCTGTACATTCATTCCTGGAAAGGAGAATATTGAAG
CTGATGCCCTGTCTAGAAAGTTGTATAAAAATGCTGAAGCAATGCTTAAT
AGGGAGCTTTTCAATGAAGGCATTAAACAGTTAAATTTCATGCCTGACTT
GGACTGTTTTGCAAGCCCCTCAAATGCCCAAATTGATAGATTTGTATGTA
GATTCCCAAAGAAGAACTCCTTTGCCACCGATGCTTTTACTGTCGACTGG
TCAAAATATAAGTGTTATTTATTTCCACCTTTTAGCCTAATCGGAAGAGT
GCTACAAAAGATCAGAAGGGACAAGCCAAGAAGAGTCTTAATGGTTGTTC
CTCGTTGGCCAACTCAAGCTTGGTATCCTATGCTAGAACGTCTTATGATT
CGTGTCTATTGTCAGGGCTGCATACATAGGTCTGCTGGGTCGTCgaattt
gaaaacaaagattGATGTAAAGAAGATACTAGACTCAGCAGGTTGGTCAT
GTGAATCGACCTTTGCAAGGTTTTACGACAGACAAATCGAAACATCCATT
GGTACTGCTATGATTGATACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041948XLOC_041948Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067139-proteinTCONS_00067139-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067139-exon-scaffold_464-1491911889:168992..169609TCONS_00067139-exon-scaffold_464-1491911889:168992..169609Clytia hemisphaericaexon
TCONS_00067139-exon-scaffold_464-1510915933:168992..169609TCONS_00067139-exon-scaffold_464-1510915933:168992..169609Clytia hemisphaericaexon
TCONS_00067139-exon-scaffold_464-1575043694:168992..169609TCONS_00067139-exon-scaffold_464-1575043694:168992..169609Clytia hemisphaericaexon
TCONS_00067139-exon-scaffold_464-1491911889:170654..171529TCONS_00067139-exon-scaffold_464-1491911889:170654..171529Clytia hemisphaericaexon
TCONS_00067139-exon-scaffold_464-1510915933:170654..171529TCONS_00067139-exon-scaffold_464-1510915933:170654..171529Clytia hemisphaericaexon
TCONS_00067139-exon-scaffold_464-1575043694:170654..171529TCONS_00067139-exon-scaffold_464-1575043694:170654..171529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:168992..171529 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33625	2.62789	1.40662	2.31631	5.22161	4.04376	4.01688	3.84059	2.32761	2.98192	2.25731	2.7972	2.4177	3.82839	1.48257	2.06899	1.93814	1.72525	1.0172	1.45896	2.99766	3.59345	2.19974	2.03079	3.89934	3.2734	1.76158	1.42545	2.54738	2.32118
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top