TCONS_00071197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071197
Unique NameTCONS_00071197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071197 ID=TCONS_00071197|Name=TCONS_00071197|organism=Clytia hemisphaerica|type=transcript|length=879bp
CCAACCGAAGAGAAACCCCAGAAAACTTATTGACTTTCTGGCCAATGCGA
GATGAGCTTTACGTAATCAAGGACATCATCTTCGCAGCAGGACGACCACT
AATACCCAAGAGTTTGAGGAACCAAATGCTCGAGGAATTACACATCGAGC
ATCAGGGTATAAACTCAATGAAAGCAAATGCACGGCAACGATTCTTTTGG
CCGGGCATGCACAAATAGATCATCCAAATCAGACAAAACTGTCAGCGGTG
TAATGAAACTGCGCCATCCCAACCGAGTACCCTTTTCAGCTCATAGTTGT
AGACATTTTTCACATGGCAGGGCACACATACATCATCTATGCAGACAGAT
TCTCCGGATGGACAGAAGTAGCCGTTTCGAAGAACCCAAACACAGCCACA
ATAACAGGCATTCTACGTGGCTATTTCCCAACGTTCGGAGTACCTGAAGA
ACTATCCAGCGACGGGGGTCCACCATTCAACGGTCATGATTTTGAGACAT
TTTTAAAAACGTGGGGAATTCGTCACCGAATATCATCGGCATATTTCCCA
CAAAGTAATGGACGTGCCGAAAGCGCTGTCAAAGTCATGAAGCGTATTTT
AGCAACAAACTTTTCGCCGAGTGGATCGCTCAACACGGACGGGCTTACCA
AAGCCCTCCTTCTACATCGCAATACCCCACCACCGGACATGGGAGTATCA
CCATCAGAACTTTTGTTCGGCAGAAACATCACAGATCACATGCCGAGACC
CGTCACCTTTCGACGAGAATGATCCGAACTTTCAGACATGAGAGAGCGAG
CCCACGCACGCCATTTCGAAAACGCTTCAAAGGATGCCCCAAACACGACA
TTACCACCACTGCAAATCGGAGACACAGT
Run BLAST on NCBI

protein sequence of TCONS_00071197-protein

>TCONS_00071197-protein ID=TCONS_00071197-protein|Name=TCONS_00071197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MAGHTYIIYADRFSGWTEVAVSKNPNTATITGILRGYFPTFGVPEELSSD
GGPPFNGHDFETFLKTWGIRHRISSAYFPQSNGRAESAVKVMKRILATNF
SPSGSLNTDGLTKALLLHRNTPPPDMGVSPSELLFGRNITDHMPRPVTFR
RE
Run BLAST on NCBI

transcript from alignment at scaffold_6:153014..153892

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071197 ID=TCONS_00071197|Name=TCONS_00071197|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at scaffold_6:153014..153892 (Clytia hemisphaerica)
ACTGTGTCTCCGATTTGCAGTGGTGGTAATGTCGTGTTTGGGGCATCCTT
TGAAGCGTTTTCGAAATGGCGTGCGTGGGCTCGCTCTCTCATGTCTGAAA
GTTCGGATCATTCTCGTCGAAAGGTGACGGGTCTCGGCATGTGATCTGTG
ATGTTTCTGCCGAACAAAAGTTCTGATGGTGATACTCCCATGTCCGGTGG
TGGGGTATTGCGATGTAGAAGGAGGGCTTTGGTAAGCCCGTCCGTGTTGA
GCGATCCACTCGGCGAAAAGTTTGTTGCTAAAATACGCTTCATGACTTTG
ACAGCGCTTTCGGCACGTCCATTACTTTGTGGGAAATATGCCGATGATAT
TCGGTGACGAATTCCCCACGTTTTTAAAAATGTCTCAAAATCATGACCGT
TGAATGGTGGACCCCCGTCGCTGGATAGTTCTTCAGGTACTCCGAACGTT
GGGAAATAGCCACGTAGAATGCCTGTTATTGTGGCTGTGTTTGGGTTCTT
CGAAACGGCTACTTCTGTCCATCCGGAGAATCTGTCTGCATAGATGATGT
ATGTGTGCCCTGCCATGTGAAAAATGTCTACAACTATGAGCTGAAAAGGG
TACTCGGTTGGGATGGCGCAGTTTCATTACACCGCTGACAGTTTTGTCTG
ATTTGGATGATCTATTTGTGCATGCCCGGCCAAAAGAATCGTTGCCGTGC
ATTTGCTTTCATTGAGTTTATACCCTGATGCTCGATGTGTAATTCCTCGA
GCATTTGGTTCCTCAAACTCTTGGGTATTAGTGGTCGTCCTGCTGCGAAG
ATGATGTCCTTGATTACGTAAAGCTCATCTCGCATTGGCCAGAAAGTCAA
TAAGTTTTCTGGGGTTTCTCTTCGGTTGG

Coding sequence (CDS) from alignment at scaffold_6:153014..153892

>TCONS_00071197 ID=TCONS_00071197|Name=TCONS_00071197|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_6:153014..153892 (Clytia hemisphaerica)
TCATTCTCGTCGAAAGGTGACGGGTCTCGGCATGTGATCTGTGATGTTTC
TGCCGAACAAAAGTTCTGATGGTGATACTCCCATGTCCGGTGGTGGGGTA
TTGCGATGTAGAAGGAGGGCTTTGGTAAGCCCGTCCGTGTTGAGCGATCC
ACTCGGCGAAAAGTTTGTTGCTAAAATACGCTTCATGACTTTGACAGCGC
TTTCGGCACGTCCATTACTTTGTGGGAAATATGCCGATGATATTCGGTGA
CGAATTCCCCACGTTTTTAAAAATGTCTCAAAATCATGACCGTTGAATGG
TGGACCCCCGTCGCTGGATAGTTCTTCAGGTACTCCGAACGTTGGGAAAT
AGCCACGTAGAATGCCTGTTATTGTGGCTGTGTTTGGGTTCTTCGAAACG
GCTACTTCTGTCCATCCGGAGAATCTGTCTGCATAGATGATGTATGTGTG
CCCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044253XLOC_044253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071197-proteinTCONS_00071197-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071197-exon-scaffold_6-1491911889:153014..153892TCONS_00071197-exon-scaffold_6-1491911889:153014..153892Clytia hemisphaericaexon
TCONS_00071197-exon-scaffold_6-1510915933:153014..153892TCONS_00071197-exon-scaffold_6-1510915933:153014..153892Clytia hemisphaericaexon
TCONS_00071197-exon-scaffold_6-1575043694:153014..153892TCONS_00071197-exon-scaffold_6-1575043694:153014..153892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:153014..153892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.223592	0.206546	0.501775	0.410595	1.28535	0.916982	0.885014	1.27468	0.178486	0.60798	0.321884	0.493719	0.775111	1.35319	0.27061	0.258139	0.159003	0.162973	0.168867	0.176707	0.102394	0.524413	0.0607136	0.22079	0.454816	0.253696	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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