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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067162 ID=TCONS_00067162|Name=TCONS_00067162|organism=Clytia hemisphaerica|type=transcript|length=787bp
ACGACCAAAGTTTTCACAGTGGGTGACTAGTGTCTGTAGGTGTTTTAGTG
ATGCGCTCAGCAATACAATATCATCGGCATATACAATGATACACGTCTGC
AGATCACCAGGAAGTGTGGTACCAATGTTAAGGGCTTTGATACTCGATAT
TAGGTCTTCAGTATAGATATTGTAGAAGTAGGGTGAAAGAATTGCTCCTT
GACGGACTCCTTGAGTTAGCGAAAAGTAATCTGAGGTTGTTGAACCGTAA
CGAACTGATGCTGTACCCTTGAGGTAAAGTTGGATGAGAAATGATACAAT
TTGACTTGGAATATCTTTCTGACAGAGTTTATTGAATAAAGTGAGCCAGT
TACAAGAGTCGAAGGCTTTTTCCCCGTCGAGGCTACACGCGTATACAGGC
GAGTTCTGTCTGTTGAAGTACCGGATGGTGTCTTGCATAACAAGTTCAGC
ATGAAGTGTTGATGCACCGCTGGTGAAACCAAATTGGGATTCGATGTGAT
TGCGTAAGGTAGGGCATCTCTCAAGGATGACAAGTTCTAACAGCTTGGTG
ATGATCGGTAGAATGCTAATACCTCTATAACTATTTGCGTCATTGAGTGG
TTTCTTTTGAGATTTCAGCAATGGGATGATGATTGATGTACTTAGGATGT
CAGGGATGTCCTTGGAAGTCAAAATGTTGTTTAAAAGTTTAGTTAGGTAA
TTGATAAAAGACTCACTCTGGGCATAGAGGTAGTGTTCAGCTGTAATCTG
AAAGGGGTCACGAGATTTCCCCCCATTGAGATGCTTC Run BLAST on NCBI protein sequence of TCONS_00067162-protein >TCONS_00067162-protein ID=TCONS_00067162-protein|Name=TCONS_00067162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
KHLNGGKSRDPFQITAEHYLYAQSESFINYLTKLLNNILTSKDIPDILST
SIIIPLLKSQKKPLNDANSYRGISILPIITKLLELVILERCPTLRNHIES
QFGFTSGASTLHAELVMQDTIRYFNRQNSPVYACSLDGEKAFDSCNWLTL
FNKLCQKDIPSQIVSFLIQLYLKGTASVRYGSTTSDYFSLTQGVRQGAIL
SPYFYNIYTEDLISSIKALNIGTTLPGDLQTCIIVYADDIVLLSASLKHL
QTLVTHCENFGR Run BLAST on NCBI transcript from alignment at scaffold_464:28309..29095 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067162 ID=TCONS_00067162|Name=TCONS_00067162|organism=Clytia hemisphaerica|type=transcript|length=787bp|location=Sequence derived from alignment at scaffold_464:28309..29095 (Clytia hemisphaerica)
GAAGCATCTCAATGGGGGGAAATCTCGTGACCCCTTTCAGATTACAGCTG
AACACTACCTCTATGCCCAGAGTGAGTCTTTTATCAATTACCTAACTAAA
CTTTTAAACAACATTTTGACTTCCAAGGACATCCCTGACATCCTAAGTAC
ATCAATCATCATCCCATTGCTGAAATCTCAAAAGAAACCACTCAATGACG
CAAATAGTTATAGAGGTATTAGCATTCTACCGATCATCACCAAGCTGTTA
GAACTTGTCATCCTTGAGAGATGCCCTACCTTACGCAATCACATCGAATC
CCAATTTGGTTTCACCAGCGGTGCATCAACACTTCATGCTGAACTTGTTA
TGCAAGACACCATCCGGTACTTCAACAGACAGAACTCGCCTGTATACGCG
TGTAGCCTCGACGGGGAAAAAGCCTTCGACTCTTGTAACTGGCTCACTTT
ATTCAATAAACTCTGTCAGAAAGATATTCCAAGTCAAATTGTATCATTTC
TCATCCAACTTTACCTCAAGGGTACAGCATCAGTTCGTTACGGTTCAACA
ACCTCAGATTACTTTTCGCTAACTCAAGGAGTCCGTCAAGGAGCAATTCT
TTCACCCTACTTCTACAATATCTATACTGAAGACCTAATATCGAGTATCA
AAGCCCTTAACATTGGTACCACACTTCCTGGTGATCTGCAGACGTGTATC
ATTGTATATGCCGATGATATTGTATTGCTGAGCGCATCACTAAAACACCT
ACAGACACTAGTCACCCACTGTGAAAACTTTGGTCGT Coding sequence (CDS) from alignment at scaffold_464:28309..29095 >TCONS_00067162 ID=TCONS_00067162|Name=TCONS_00067162|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_464:28309..29095 (Clytia hemisphaerica)
AAGCATCTCAATGGGGGGAAATCTCGTGACCCCTTTCAGATTACAGCTGA
ACACTACCTCTATGCCCAGAGTGAGTCTTTTATCAATTACCTAACTAAAC
TTTTAAACAACATTTTGACTTCCAAGGACATCCCTGACATCCTAAGTACA
TCAATCATCATCCCATTGCTGAAATCTCAAAAGAAACCACTCAATGACGC
AAATAGTTATAGAGGTATTAGCATTCTACCGATCATCACCAAGCTGTTAG
AACTTGTCATCCTTGAGAGATGCCCTACCTTACGCAATCACATCGAATCC
CAATTTGGTTTCACCAGCGGTGCATCAACACTTCATGCTGAACTTGTTAT
GCAAGACACCATCCGGTACTTCAACAGACAGAACTCGCCTGTATACGCGT
GTAGCCTCGACGGGGAAAAAGCCTTCGACTCTTGTAACTGGCTCACTTTA
TTCAATAAACTCTGTCAGAAAGATATTCCAAGTCAAATTGTATCATTTCT
CATCCAACTTTACCTCAAGGGTACAGCATCAGTTCGTTACGGTTCAACAA
CCTCAGATTACTTTTCGCTAACTCAAGGAGTCCGTCAAGGAGCAATTCTT
TCACCCTACTTCTACAATATCTATACTGAAGACCTAATATCGAGTATCAA
AGCCCTTAACATTGGTACCACACTTCCTGGTGATCTGCAGACGTGTATCA
TTGTATATGCCGATGATATTGTATTGCTGAGCGCATCACTAAAACACCTA
CAGACACTAGTCACCCACTGTGAAAACTTTGGTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067162-exon-scaffold_464-1491911889:28309..29095 | TCONS_00067162-exon-scaffold_464-1491911889:28309..29095 | Clytia hemisphaerica | exon |
| TCONS_00067162-exon-scaffold_464-1510915933:28309..29095 | TCONS_00067162-exon-scaffold_464-1510915933:28309..29095 | Clytia hemisphaerica | exon |
| TCONS_00067162-exon-scaffold_464-1575043694:28309..29095 | TCONS_00067162-exon-scaffold_464-1575043694:28309..29095 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:28309..29095 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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