|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066936 ID=TCONS_00066936|Name=TCONS_00066936|organism=Clytia hemisphaerica|type=transcript|length=327bp
GCAATTTCGGAGTTATCGTTTCACTTTGAAAATTCTGTCGAAAGAATGAT
AGTAAATCATCGATATCTTTTTCTGAGAGGATTCCGACTAACTTGCATAC
ACATAGCTGACTGGATCAAATCAATATATTCGTTAGCAACAACAAATGAC
GGAAGATTCTTCACATGACTCCATGGTGCAGATAAGATGTGGACAATCCA
AGATCTGACCTCATGGCAACGAGACTTTTTTCGTCTATGAACGTTGTGAT
ATTCGCCTTAGTCAAAATGCTGATTCGAATGTCACGGGAAAACGATTTTA
AAAGCGATGCAGTTTGACATGCTGTTG Run BLAST on NCBI transcript from alignment at scaffold_462:983316..986420+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066936 ID=TCONS_00066936|Name=TCONS_00066936|organism=Clytia hemisphaerica|type=transcript|length=3105bp|location=Sequence derived from alignment at scaffold_462:983316..986420+ (Clytia hemisphaerica)
GCAATTTCGGAGTTATCGTTTCACTTTGAAAATTCTGTCGAAAGAATGAT
AGTAAATCATCGATATCTTTTTCTGAGAGGTAAGTTTATTATAGTCAATT
AAACCAATTCTCTTAATAGACTTTGGAAttgataaaccaaataaaagaCT
AATACTGTATGGGTTTTCCTTGAAAATTAGTTTTATCTACTAGTGTGAAA
AGGTAAaatgaatatttaaaaaatggtGCTCACGTAAGGAATTCAGTTCT
TTAGGTGATATTCTATCTGCCCGGTTGATCGCAATATGGCACTTGCTGTA
GAGTCCAAATagtgatttgaaatttctgttAAGTTTAAAGCTATCATCAT
GTACCTCAGTTCCTGCGAACCCCTCACTGCAAACAATTATTGGCACCGTG
TTGCAAAGTTTTACGATGTTTTCTTCCTAAAAATTTAAACGCAgtaaatg
ttttattttcatagCATATTACCCGTTACTGTAACTTCTgggaaaatgat
caaaattctCCATGTCAGACAGATTGATTTAAAGAGGCATTACATTTAGA
CGAAATTCAATAAAGTATTTAGAATATTGGTTAATTTGtggcaaaaaaat
tcgaaacaaaaatctTTGCTTAGGTAGGCTAGGCCACTGTCTGATATAAA
ACTTCATACATGTAGCATCTTATGTACATGATTGCCAATGAAACTTTTTC
CGTGAAATGCCTGTCTGCAAATGTGGAGCTTTTTTAAAAGCGCATCAAGA
GCAAGGGTGCATGGACCNACCTGTCTGCAAATTTGGAGCTTTTTTAAAAG
CGCATCAAAAGCAAGGGTGCATGCACCCTTCTTGATAGAGTTGGTCCCTT
GTAATTGGTCTTCTGCatcatcattttcttcttctttatcttCTTCTGCC
ACCTGTTTCTTCATAAGCTTTCCAATCTCCTTTTGCTAAAATTATGTAGA
TAACAAATAATAAATACTTTTATCGTAAAAATTTTGCAAGATTTAATTTC
TTGAGCTAAATAAATGTgtgaaattttctggaatgtATATTAGAAATAAT
CCATATTATATAGGTAtgaaagtttaaattcaaattattaGTATTAGTTT
GTGGTTAACGTAATCTTTTGCTAACCTTTTTTGCCACTATTTTCATAAAA
TGATCAATCCTTggattataaattttgaaaattgcttcTTCATTTTCAGG
ATTCCGACTAACTTGCATACACATAGCTGACTGGATCAAATCAATATATT
CGTTAGCAACATCAATCTCGTCTTCAAGAGCAGCAACGTCATGTTATGTT
TTGATTATGGTTGGTTTCATCTCTCCTTTTTCAACTGCAATCTTCTAGAA
ATGAAAGGTTTCAAATTTCCTTCCATCTACAAAGCAGTATTAAATTATTA
ACATATTTACATTCGAATTATCAAAGCGTGGCCCAAAAATTTCATAAGTT
GATTATACCTTGCATTCTTCCTCGAAAGTGCCCAAAGAGATATGTAAGGC
TGGCAAAGCaacctgaaataaaaaattaatgattacTTGATTAAAATAAC
AAGATAAACTACCTAACAGGTTAACCGACTATTCAATTTTTACTTgcctt
tttgatcatgtgatttaATTGTGTACCAATGCAAGGAGCATTTGGTAACA
TGAAAAACAACGAGCAACTCGATTTCTTATCTTTTGTTATTAACAAAGAA
AAGGGGTAAAAGTTACAACAAAATAAGACTTCCAGATCAGGGTTGTTATA
TGGATTTTAGTGAATCAAGGGACCTTAACATACAGTTTCTTTGACTTCGT
GGAATTTTCAATTGGCTTTTCGTGATGGTGCAAAATGGACAGGGATATCG
AcctgataaaaaaatatatttagtgACTTAGAACTTGCAGCAATATAAAA
TACATAAAGTTTTGGATGTTTATCAACAATCCTAGTTATTTGGATGAGTT
GATCATTAAAACTAAAACTGAAGAATAAAGCACTCAATGTTTTATTTGTG
AATATGAAAATTACCTGATGCACCTGAGATACCATAATCAGCACAAAGGA
ACTCGTAGTCCCCTGTTATAAAGACCCGGAAACAATAATCActagaaatg
aagaaaattataaaataacttttattCAGATAGTGATATAAGATAAAAAA
ACTAGGGTTCAAACAATCTGCATGTCAAGATGATGTCACCTGTTTTAAAG
AGAATCAAAATGATAGAGTAAATTAAAAAGGGAATCGAATTTATTACTTC
CACTTCATTTGCTGGAGCTCATCGATTTGACTTGTATACATTCCAAATCC
AGCCCTCAAATTTGATCTGTAGTCTTTTGCCTCAAAGTATGAGAAGATGA
CGGTATTGTCTTGACTGTTTGGTTTAGATGTATTACAAACTTGCATGACT
CCTTTAAAAGACTTCCCACCGTGGTCTCCGCCTAGTTTAACATGTATTTC
TTGATTCATTTAAGGATGGTGAATGAGCTGGTTTTCGCTAAATGagattt
ttaaaacattgaGTTAACTATTGTTTCCAGAATCTGTGGGGATGTTTCTA
ATGTTATTCTATTTAGTTTTTCAGAATAAGAACTActgcaattttgaaaa
aattgatatttttaggtAAGACTTACTTGTCAAGCTTGTCAACATAGTCA
ACAACAAATGACGGAAGATTCTTCACATGACTCCATGGTGCAGATAAGAT
GTGGTATTGACCTTTTctatctttttttcaaataaaaaaggtgACATTTC
CACGGCAAACAATCCACCAGCCCACTCACGTGACACCTTACGTTGTTTAT
GATTTGAAGCCATTTCTATATTAAAAGACAGCATACAcctgtaaaaaaat
tcattgaATTGACGATAATATTCAGAATGATTAGTTTTTTAACCAGGAGA
TTTCAGCTatgtttttaaacatttttaacgATGTTTATTTACCTTGCCAT
TGCTTTCATTTTTTCCCAGGACAATCCAAGATCTGACCTCATGGCAACGA
GACTTTTTTCGTCTATGAACGTTGTGATATTCGCCTTAGTCAAAATGCTG
ATTCGAATGTCACGGGAAAACGATTTTAAAAGCGATGCAGTTTGACATGC
TGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066936-exon-scaffold_462-1491911889:983316..983394 | TCONS_00066936-exon-scaffold_462-1491911889:983316..983394 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1510915933:983316..983394 | TCONS_00066936-exon-scaffold_462-1510915933:983316..983394 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1575043694:983316..983394 | TCONS_00066936-exon-scaffold_462-1575043694:983316..983394 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1491911889:984515..984575 | TCONS_00066936-exon-scaffold_462-1491911889:984515..984575 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1510915933:984515..984575 | TCONS_00066936-exon-scaffold_462-1510915933:984515..984575 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1575043694:984515..984575 | TCONS_00066936-exon-scaffold_462-1575043694:984515..984575 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1491911889:985968..986018 | TCONS_00066936-exon-scaffold_462-1491911889:985968..986018 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1510915933:985968..986018 | TCONS_00066936-exon-scaffold_462-1510915933:985968..986018 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1575043694:985968..986018 | TCONS_00066936-exon-scaffold_462-1575043694:985968..986018 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1491911889:986285..986420 | TCONS_00066936-exon-scaffold_462-1491911889:986285..986420 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1510915933:986285..986420 | TCONS_00066936-exon-scaffold_462-1510915933:986285..986420 | Clytia hemisphaerica | exon |
| TCONS_00066936-exon-scaffold_462-1575043694:986285..986420 | TCONS_00066936-exon-scaffold_462-1575043694:986285..986420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:983316..986420 + |
Blast
The following BLAST results are available for this feature:
|
