TCONS_00066862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066862
Unique NameTCONS_00066862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066862 ID=TCONS_00066862|Name=TCONS_00066862|organism=Clytia hemisphaerica|type=transcript|length=1042bp
CCTTGTCTATTGTTAGACATAAcatcaataataaaaaaaacgatttttta
atGGGAGTGATCGAGCTTGTGTAAAAGATACACGAATTAATTCGCTGTCT
TATATTATACGTTTATGTTGTTTTAGAAGTGTGTTTTGTGTGATTGAATT
TTGGAATTCTTTTGCTTTGATCAGAAGGGTTGTGACATTTGAGGGCGACG
CACAGAAGttacattttgattttcttggacTTTCtatttcaccaattttc
atACACAATGAGTTACGAAGACATGGAAGAATACCGTGATACCTTCTCAC
TTTTCGACAAACAAGGAGATGGAAAAATTGAATGTGGCGATATTGGAGAT
ATCTTACGCGCTCTCGGATGCAACCCAACTCAAGCCGAAGTCAAAAAAAT
CGTCGCCGACATCGACTCCTCAGGACAAAAGCGAATCACCTTTGAAGAAT
TTATTCCAATCTTTCACACGATGAGCAAAAAGAAAAGCTCGTGTGGTTTC
GAAGCCTTCTCCGAAGGATTCAGGATTTTTGACAGAGACAACAACGGTAT
GGTCAGTGTGGCCGAAGTCAGACATTTATTGACCAGTTTAGgtgaaaaat
taaattccagTGATGTCGATGCTTTAGTACAAGGACTTGAAGATTCAAGT
GGCATGATCAACTACGAAGAATTTGTTCGTGGAGTAATGAACGCTTAAAC
ACactacaaacaaacaaacaaacatcaGAACTGCgtccaaaaacaaaaac
aacacaaCATCACGCAATCACCATAACAACTGATGATACGtcatcaattt
caaaatttagggTTCTTTTTGCGAAAAAAGCAAGAAAGTTGGGATgagtt
ttaaatttcaaatttaataattctatattattttttaaaacgaaatctta
caatatttttgtttgaaatttttgtaccATATTAAACTTGGGGaggaact
ttctatttttgtaaaataatatttttcttaattatactatattatatttt
ccaaagaaaaacaaaaacatttagtACTCTTGTCGTTctata
Run BLAST on NCBI

protein sequence of TCONS_00066862-protein

>TCONS_00066862-protein ID=TCONS_00066862-protein|Name=TCONS_00066862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MSYEDMEEYRDTFSLFDKQGDGKIECGDIGDILRALGCNPTQAEVKKIVA
DIDSSGQKRITFEEFIPIFHTMSKKKSSCGFEAFSEGFRIFDRDNNGMVS
VAEVRHLLTSLGEKLNSSDVDALVQGLEDSSGMINYEEFVRGVMNA
Run BLAST on NCBI

transcript from alignment at scaffold_462:62620..69846+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066862 ID=TCONS_00066862|Name=TCONS_00066862|organism=Clytia hemisphaerica|type=transcript|length=7227bp|location=Sequence derived from alignment at scaffold_462:62620..69846+ (Clytia hemisphaerica)
CCTTGTCTATTGTTAGACATAAcatcaataataaaaaaaacgatttttta
atGGGAGTGATCGAGCTTGTGTAAAAGATACACGAATTAATTCGCTGTCT
TATATTATACGTTTATGTTGTTTTAGAAGTGTGTTTTGTGTGATTGAATT
TTGGAATTCTTTTGCTTTGATCAGAAGGGTTGTGACATTTGAGGGCGACG
CACAGAAGttacattttgattttcttggacTTTCtatttcaccaattttc
atACACAATGAGTTACGAAGACATGGAAGgtcagccattttgaattttca
tttttttctaaagtttatgATATTATGAGATAACTCTGCGTGATGATTTT
ATTAACTCACAGCAGTTTAATAATATTATTATTCCTGTTTAGAGTTTATG
CTTTCCACTCGTGAGAAATTGTTAGATTTTTATTATGTTACCGAAGATAG
TCTTTGGTTAAAGGGTGGGATTGCTTTGTCCTTAATTTCCTTTCCTAAAT
AGACCAATCAATAATGTTTGTACAATCATTTGAAGGTGTTGATCATTTAC
CTaaatcatttgatttgaaaacctTGACTCGAccctcttctctttatgtc
gaCAAGTTGGATTAGATCATCGTGGCATTTTATCATTTGAGAGACTTATA
GTTTATTAGCAGACAATTAGAATTAAAATGGTAATTTTTATCTATAAAAT
GCTTTCTGATGTTGGATAATAAGAGCTGCTTTGTCTGTTCTATGACTTCT
ATCGTTGTGTTAAAATAGATCTTATTTTGTGAGCGATTTAAATCTTTTAG
TGAGAAGTCTTGTTCCGCCTTTTCTCGACATATCTCTGATTTTTCTCCTC
ACTAGAACATGGATTTTATTTCAACCCTCACTTTTTCTGATTCTCACTCA
AGTCCGTAAGGCATTTTTTTGTTATCTTTCGGTTGTAGTCTAGCAATGTT
AACGATGTGACAACTACAAGAGAAAGAAATTTGATCTTTGTGTCAAAAAC
TTCTTACACGCTTTTCACGGTTTTCCTCCATTTTTTAACGCAGTTCAACA
TTTGATAGATTGGAAATAATggtcaaaagaaattttaaaacatcGCTGTC
TCACCACCCATGTCTAAATcatttttgagacaggggtgaagtTAAGCAAG
ATTTCTAAGTATTGACTAAATGACATTGTGCAAAAGTTTAGCTATCCTTA
TTTCTGGTGCCAAACTTTCTAGGCAATCCATATAAAAACTGcagtatatt
atttttttgcattttcaaacAAACTATAGTTTATTAATTTGCCATAATTG
AGGTTTACTTGACACAGGGGTGACTCGTGGAGTTGAATTTCATGACCAAC
AAAGGAACTTTCATTGAAATAATACAcgttttaataagaacaaactatat
aagaacataaggcttcgatggccaaaatgttaagaaccatgtttgaaaca
cttttttttttaagaaaaatgggcaaatatacttacaaaatggttaaaat
aagaTCATGTTAGGaacttttttaggcttaaaacccaaggcttcaaaaat
tttggatgttcttataaaaaagaacgtGTACATTTTTATCGAAGTTTCTT
TGACCAATCTAGCAGATATTGAACTGTATTAAAAATGTTGGAGAACCTTT
AAAATATTCTTCCTTTTCCCTTTTGAAATCTTCAGGCAGAAGAAAGCGAA
GATCAAATGTGGGGTAAGATTTCTTGTAAATATTTGTGAAGTATGATTGG
TCTAATGTAGGGAAGGAAATTGGGATAAATAGGATGGCAATTTTAAGCCC
TGTTTTTAATAGTAGTTACAGTAATGGATTATCTTTCCAAAGTCGAATAA
CTTATTTTATCAGTGGTAAAATAACACCCCCTAATTTTAATCATAATAAT
ATTTATTACttacaatttttataaattaaaaCATGTTCATGGCCCTTGTA
GATTTATACTTGTTCAATTTTTTGTACACCGTCGAAATATTTATCTGCTT
AAAGAATCTATGAAATGGTTTTATTGGTTAACACGTTGGTAACTTTTTAT
GTAAGCCCtttgaataataaaatttacgtgctttttttgtgaattatTTT
GTTACGTGTATGTTATCTCACAAACCATTTTAATTTAACACTAAATCGAT
TTATGCAAAAATTATAGTAATTTTATTGCaccaattcaaaaaattcatga
tagcTTGACCTCACTTAAAATCAACGAGCCATTAGTCGGTCACTcctctt
tttgaaaaacaacctttccattgCAAAGATTCGCAGAACTTTTAAATCCT
TTGAATGTTTAACGAAGATAATTTTCATCGAGTGTCCTAAACACATGGTC
TGCTAAATACATTTTGAAtgcgcaaaaaaaaacttttttatcatCAAAGT
ATTTTATGCAAGCCTCCTAACATTCAAAACATTGTCACTCCCCTTTCTTA
attttacaaatattatttCCGCCATCTTTAATATCTCGTCATTAGGAAAT
CATTAACAGATCCTTTAATTTCCATAATTAACAAGAGAAGAGCATAACAT
TTTTCATGAATGATAATAATGACCAGAAAGCTCGGAAAGCTTACCTCCTT
AATGTAGTATATGAAAAAACTTCCGCTgctttttgaaatgaaaaagctTT
TTCATTCCTCACCCTAGCATGAGAACTTGAGCCTactccattgagtttaa
agggTTAAAAGGATTCTTCAAGGATTCTTTGGTAACCCAGTGATAGGTTT
tatttcaatctggcgtttgtgtgaaagAGCTTTCTCACCTGGGACGGGTT
TCGACCAATATTTCTCCAGATGAAATCTCAACGGGTCTCTTTTACAGGGG
TGTTAAAGgtgagtgatatcgtttgcttactcatcaattttaattcacaa
gctttttcacattggattgacacagatattgagcaagattggtcagaaag
aagaaaagaaaaacatattttgcttatatcagcataatataacaatagca
agacactgtccagatatgaaatatgtgtctggtatgaaacgggaacactt
atgtaaaaataaaacctttaaataactGAATACAAAGACATCGAAAAACC
TATCAaaccattttgtttttatttccatTTTAGAATACCGTGATACCTTC
TCACTTTTCGACAAACAAGGAGATGGAAAAATTGAATGTGGCGATATTGG
AGATATCTTACGCGCTCTCGGATGCAACCCAACTCAAGCCGAAGTCAAAA
AAATCGTCGCCGACATCGACTCCTCAGGTATCTTGAATTCGACATTTTAG
CGGTAATTTTTAAGTATAGACCTATAACCTTATCTTCATAATTTGGGATT
GTATTTAAGTTTAACAGGACCagatgatacacgtttttttataagaatat
acatTATAAGAATATCACAATCATGGAATTCGGCAacagaacctaagaat
gccatttttagagcatttgtcaattatccccaagtaactttcacaaaaaa
tgccatttgtATTGTGTGTGCGTTAATATTTGTGGTCAGTATTTTAACGT
CATTACCCTCAGATTCAAAATCATAATTTAAGTTatttaataaattttga
ttttatgaaaataaaatgaagtcaCTTCTGTGTTTACAATTTTTGCAGAA
ATCATTCAGGGAGGATCAACGATAATTTAAGTTAAAAACTATTATTTGGT
GTGTATTGCATGTTGTATTGCATGAGTCAACCAAAACGTTCTTGCATTTG
TGCTATTTGGATCAAGAATGACTTGTGATGCGAATGCTGCTAAGAAATAA
TCCAAGCAATTGTAAAGCCAAATCttttaatcaataaaaagattaaaata
CCATAGGGATTGATTGGAGGTCAAATATTTGATGGCTACCCCGGTAAATA
GAATGCGTAGTTACACAGTTTTTGTTTAGTCGTAGCCTAAAGGGAACAAC
TATAACGATAGTGACTTAACTATGGACAAAACCTTACGACCTTACACATT
ATagtgacacccctgtctcgttgACATTGTGAGAATCGTTTAGTTACTGG
GGATGAATAAGCTAAATTCCAAACGAGTAGAATCTCTCACATTTGATTCA
AATACCAACTGTTTACCTTCACTCGTGATAGCTTAAAATCCAAGTGGGAT
GCAATAcccttgaatttttttcctaaTAAGAATTCAATCAAATCAACACT
CAGGGCTCACTTACAATGAGTTTAGGCAGGGTGGTCAAAATATCACATAT
CGATGATCTATCGTTTTCCTCATAGGACAAAAGCGAATCACCTTTGAAGA
ATTTATTCCAATCTTTCACACGATGAGCAAAAAGAAAAGCTCGTGTGGTT
TCGAAGCCTTCTCCGAAGGATTCAGGATTTTTGACAGAGACAACAACGGT
ATGGTCAGTGTGGCCGAAGTCAGACATTTATTGACCAGTTTAGGTAAGTC
GTCTCCTGCCCAGGCTCCTAAAATACCTTATTTGCTTTTCATAATAACTC
ACATTAGTTATAaacacttttttgcaaagtaaagATTTTattgcgcctcc
ttagactctatattcGTTGTCCCCCCAATTTCATGGCGTGACCCTGTATT
AGTTATAAATACACTTACAGATCAAGTTCTAGGGTGTTGTGGCTGCTTCA
GATGCTGTTTTAAATCAATAGCTGCTGCCTAAGTTTGGAAAATTCAAATT
CTGATGGTTTTCCTGTTTAAAAAGTGAATATGATTCTATCTGCAAATTAT
AGACAAAGTAATTACTTTTGGAGTATCTACACTTCATTAATTGTatcttt
tgattattttttcaggtgaaaaattaaattccagTGATGTCGATGCTTTA
GTACAAGGACTTGAAGATTCAAGTGGCATGATCAACTACGAAGGTTTGTA
CCCATACTCACAATTCAAAATTCATGCATGTTTCTTGGGGGAAAGTCATG
ATGCTTGCTATATGAATCTATACTGATATCTTCCTCTTTAAGGCCTTAGG
GATGGAcgtaaaatctttatttttgaaaggtATTAAAAGGACAAATACTT
TCCATAGAGAGTATTTTTAGGTATCCCTACAAAGGTCATGTCACgctctt
gaaaaaatttccgcCAAAACTTGGTTGAGTTCTCAACGCAAGAAATTCTA
CTATGAAGTTTGATAAGGTTATCCCTTTAAAATGGCTTAAGATGGGGATC
AAAATTAATTTGCTTTATTCACAGATAGTCTAAACATTACTATTCAAAAG
AAAGATCTTATATCAAAATATTGATTCTAATAACAGATTTGACTATGCTA
ACTATGACAGtggtcaaaacttttgaaatcacaCAGTCAAAAAGCTCTTA
GTCAACAGAGAGGCGTTCAAGTTAAATTTTGTTAGGACCAATCTTTCGCC
GGTGGAAAAATCGACATTTAATTCAATGAATTCGTAGCTAATTTAAATAC
ACATCAAATACCACCTACCATATAAAGCCAAGGAGATCCCAGCCAAATTG
GAAAGTTCGTCCCCAATGATCAGATACTCTATTATTTTATTACCCGGTGG
ATAAGTGGTTTCAACCCCATTGTGAAGGGGGCGGTAAAGTTATAAAGTTG
AATCCCGCCCGTCTTCAATTACTCCAATAGAAACTTAAAACCCCTTCAAA
CAAATTGGGATTTCTAATTATACTGATATGTGGCTCATGGGCTTGAAAAA
CTCTCGCCAGGACACCGAGACAGGATTGTAGAGAAagaaagttagatttt
tttctctcaatatTTCAAGtctgaaaattagatttttcaagaGACGGCAA
TTAGATGTGACTTAGTTGATAATAGGGTCTGCATTTTTCTCTTTCAGAAT
TTGTTCGTGGAGTAATGAACGCTTAAACACactacaaacaaacaaacatc
aGAACTGCgtccaaaaacaaaaacaacacaaCATCACGCAATCACCATAA
CAACTGATGATACGtcatcaatttcaaaatttagggTTCTTTTTGCGAAA
AAAGCAAGAAAGTTGGGATgagttttaaatttcaaatttaataattctat
attattttttaaaacgaaatcttacaatatttttgtttgaaatttttgta
ccATATTAAACTTGGGGaggaactttctatttttgtaaaataatattttt
cttaattatactatattatattttccaaagaaaaacaaaaacatttagtA
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAGCCAAGGAGATCC
CAGCCAAATTGGAAAGTTCGTCCCCAATGATCAGATACTCTATTATTTTA
TTACCCGGTGGATAAGTGGTTTCAACCCCATTGTGAAGGGGGCGGTAAAG
TTATAAAGTTGAATCCCGCCCGTCTTCAATTACTCCAATAGAAACTTAAA
ACCCCTTCAAACAAATTGGGATTTCTAATTATACTGATATGTGGCTCATG
GGCTTGAAAAACTCTCGCCAGGACACCGAGACAGGATTGTAGAGAAagaa
agttagatttttttctctcaatatTTCAAGtctgaaaattagatttttca
agaGACGGCAATTAGATGTGACTTAGTTGATAATAGGGTCTGCATTTTTC
TCTTTCAGAATTTGTTCGTGGAGTAATGAACGCTTAAACACactacaaac
aaacaaacatcaGAACTGCgtccaaaaacaaaaacaacacaaCATCACGC
AATCACCATAACAACTGATGATACGtcatcaatttcaaaatttagggTTC
TTTTTGCGAAAAAAGCAAGAAAGTTGGGATgagttttaaatttcaaattt
aataattctatattattttttaaaacgaaatcttacaatatttttgtttg
aaatttttgtaccATATTAAACTTGGGGaggaactttctatttttgtaaa
ataatatttttcttaattatactatattatattttccaaagaaaaacaaa
aacatttagtACTCTTGTCGTTctata

Coding sequence (CDS) from alignment at scaffold_462:62620..69846+

>TCONS_00066862 ID=TCONS_00066862|Name=TCONS_00066862|organism=Clytia hemisphaerica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_462:62620..69846+ (Clytia hemisphaerica)
ATGAGTTACGAAGACATGGAAGAATACCGTGATACCTTCTCACTTTTCGA
CAAACAAGGAGATGGAAAAATTGAATGTGGCGATATTGGAGATATCTTAC
GCGCTCTCGGATGCAACCCAACTCAAGCCGAAGTCAAAAAAATCGTCGCC
GACATCGACTCCTCAGGACAAAAGCGAATCACCTTTGAAGAATTTATTCC
AATCTTTCACACGATGAGCAAAAAGAAAAGCTCGTGTGGTTTCGAAGCCT
TCTCCGAAGGATTCAGGATTTTTGACAGAGACAACAACGGTATGGTCAGT
GTGGCCGAAGTCAGACATTTATTGACCAGTTTAGgtgaaaaattaaattc
cagTGATGTCGATGCTTTAGTACAAGGACTTGAAGATTCAAGTGGCATGA
TCAACTACGAAGAATTTGTTCGTGGAGTAATGAACGCTTAAATGAGTTAC
GAAGACATGGAAGAATACCGTGATACCTTCTCACTTTTCGACAAACAAGG
AGATGGAAAAATTGAATGTGGCGATATTGGAGATATCTTACGCGCTCTCG
GATGCAACCCAACTCAAGCCGAAGTCAAAAAAATCGTCGCCGACATCGAC
TCCTCAGGACAAAAGCGAATCACCTTTGAAGAATTTATTCCAATCTTTCA
CACGATGAGCAAAAAGAAAAGCTCGTGTGGTTTCGAAGCCTTCTCCGAAG
GATTCAGGATTTTTGACAGAGACAACAACGGTATGGTCAGTGTGGCCGAA
GTCAGACATTTATTGACCAGTTTAGgtgaaaaattaaattccagTGATGT
CGATGCTTTAGTACAAGGACTTGAAGATTCAAGTGGCATGATCAACTACG
AAGAATTTGTTCGTGGAGTAATGAACGCTTAAATGAGTTACGAAGACATG
GAAGAATACCGTGATACCTTCTCACTTTTCGACAAACAAGGAGATGGAAA
AATTGAATGTGGCGATATTGGAGATATCTTACGCGCTCTCGGATGCAACC
CAACTCAAGCCGAAGTCAAAAAAATCGTCGCCGACATCGACTCCTCAGGA
CAAAAGCGAATCACCTTTGAAGAATTTATTCCAATCTTTCACACGATGAG
CAAAAAGAAAAGCTCGTGTGGTTTCGAAGCCTTCTCCGAAGGATTCAGGA
TTTTTGACAGAGACAACAACGGTATGGTCAGTGTGGCCGAAGTCAGACAT
TTATTGACCAGTTTAGgtgaaaaattaaattccagTGATGTCGATGCTTT
AGTACAAGGACTTGAAGATTCAAGTGGCATGATCAACTACGAAGAATTTG
TTCGTGGAGTAATGAACGCTTAAATGAGTTACGAAGACATGGAAGAATAC
CGTGATACCTTCTCACTTTTCGACAAACAAGGAGATGGAAAAATTGAATG
TGGCGATATTGGAGATATCTTACGCGCTCTCGGATGCAACCCAACTCAAG
CCGAAGTCAAAAAAATCGTCGCCGACATCGACTCCTCAGGACAAAAGCGA
ATCACCTTTGAAGAATTTATTCCAATCTTTCACACGATGAGCAAAAAGAA
AAGCTCGTGTGGTTTCGAAGCCTTCTCCGAAGGATTCAGGATTTTTGACA
GAGACAACAACGGTATGGTCAGTGTGGCCGAAGTCAGACATTTATTGACC
AGTTTAGgtgaaaaattaaattccagTGATGTCGATGCTTTAGTACAAGG
ACTTGAAGATTCAAGTGGCATGATCAACTACGAAGAATTTGTTCGTGGAG
TAATGAACGCTTAAATGAGTTACGAAGACATGGAAGAATACCGTGATACC
TTCTCACTTTTCGACAAACAAGGAGATGGAAAAATTGAATGTGGCGATAT
TGGAGATATCTTACGCGCTCTCGGATGCAACCCAACTCAAGCCGAAGTCA
AAAAAATCGTCGCCGACATCGACTCCTCAGGACAAAAGCGAATCACCTTT
GAAGAATTTATTCCAATCTTTCACACGATGAGCAAAAAGAAAAGCTCGTG
TGGTTTCGAAGCCTTCTCCGAAGGATTCAGGATTTTTGACAGAGACAACA
ACGGTATGGTCAGTGTGGCCGAAGTCAGACATTTATTGACCAGTTTAGgt
gaaaaattaaattccagTGATGTCGATGCTTTAGTACAAGGACTTGAAGA
TTCAAGTGGCATGATCAACTACGAAGAATTTGTTCGTGGAGTAATGAACG
CTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041815XLOC_041815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066862-exon-scaffold_462-1491911889:62620..62898TCONS_00066862-exon-scaffold_462-1491911889:62620..62898Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1510915933:62620..62898TCONS_00066862-exon-scaffold_462-1510915933:62620..62898Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1575043694:62620..62898TCONS_00066862-exon-scaffold_462-1575043694:62620..62898Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1491911889:65753..65896TCONS_00066862-exon-scaffold_462-1491911889:65753..65896Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1510915933:65753..65896TCONS_00066862-exon-scaffold_462-1510915933:65753..65896Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1575043694:65753..65896TCONS_00066862-exon-scaffold_462-1575043694:65753..65896Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1491911889:66895..67062TCONS_00066862-exon-scaffold_462-1491911889:66895..67062Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1510915933:66895..67062TCONS_00066862-exon-scaffold_462-1510915933:66895..67062Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1575043694:66895..67062TCONS_00066862-exon-scaffold_462-1575043694:66895..67062Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1491911889:67435..67512TCONS_00066862-exon-scaffold_462-1491911889:67435..67512Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1510915933:67435..67512TCONS_00066862-exon-scaffold_462-1510915933:67435..67512Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1575043694:67435..67512TCONS_00066862-exon-scaffold_462-1575043694:67435..67512Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1491911889:68467..68516TCONS_00066862-exon-scaffold_462-1491911889:68467..68516Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1510915933:68467..68516TCONS_00066862-exon-scaffold_462-1510915933:68467..68516Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1575043694:68467..68516TCONS_00066862-exon-scaffold_462-1575043694:68467..68516Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1491911889:69524..69846TCONS_00066862-exon-scaffold_462-1491911889:69524..69846Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1510915933:69524..69846TCONS_00066862-exon-scaffold_462-1510915933:69524..69846Clytia hemisphaericaexon
TCONS_00066862-exon-scaffold_462-1575043694:69524..69846TCONS_00066862-exon-scaffold_462-1575043694:69524..69846Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066862-proteinTCONS_00066862-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:62620..69846 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71691	3.23061	2.01564	0	10.3709	13.6685	99.3772	90.9797	98.3822	110.764	69.7637	65.3686	150	121.801	0.52855	1.12242	4.89509	2.61473	4.82015	4.11035	0	0	2.05771	1.89866	33.7327	44.4877	2.07301	6.23472	2.36597	2.34527
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00066862 vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.671e-41
Identity = 67/146 (45.89%), Postives = 99/146 (67.81%), Query Frame = 3 
Query:  261 SYEDMEEYRDTFSLFDKQGDGKIECGDIGDILRALGCNPTQAEVKKIVADIDSS--GQKRITFEEFIPIFHTMSKKKSSCGFEAFSEGFRIFDRDNNGMVSVAEVRHLLTSLGEKLNSSDVDALVQGLEDSSGMINYEEFVRGVMN 692
            S E  +E+++ F LFD+ GD KI    +GD+LRALG NPT AEV+K++ +  +     K+I FE+F+P+   +S  K    +E F EG R+FD++ NG V  AE+RH+L +LGEK+   +V+AL+ G EDS+G INYE FV+ +M+
Sbjct:   48 SKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193
The following BLAST results are available for this feature:
BLAST of TCONS_00066862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL11.671e-4145.89Myosin light chain 1/3, skeletal muscle isoform OS... [more]
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