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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066756 ID=TCONS_00066756|Name=TCONS_00066756|organism=Clytia hemisphaerica|type=transcript|length=1163bp
ttttacagtaaaaataaataaataaataatccAAGATGGCGTCGTCGAGT
AAGCAAGCAAAGAAAGAGGAGGAGAAAAAAGTGGGCGGTGATCATTTCAG
AAGGACTTGGGATGctgatgaatttgaaaagaaagctAAAGAACGTTTAC
AAGAAGATTTAGATTTTCTTGACGGCAAAGCGTCCTCATCCAGTAGTGAT
CCACCAGTTCAACGTGAGAAGCTGAAAGCAAGAGATTACGCTGTAGACTT
ACAATCAAGATTGGGAAAATCACAAGTCATCACTAAAACTACTGCACTGG
CCGATCAAGGTGGTTATTATTGCAATGTGTGTGATTGCGTGGTGAAAGAT
TCCATTAACTTCTTGGATCACATCAATGGAAAGAAGCATCAGCGAAACAT
GGGAATGTCTATGAAAGTTGAAAGATCATCTCTTGACCAAGTCAAAGCTA
GGTTTGCCATGAATAAGAAGAAGAAGGAAGATAACGAGAAAAAGAAAGAT
TATGACTTCGATTCAAGAATTAAAGAACTAGAAGATGAGGATGACCGAGT
ACGCCAACGTAGGCGTGATTCGAAATCAGAACGTAAACGCAAGCAACAAG
AAGCTTTACAAGAATACCAAGATGATGACGTGGCTGCAATGATGGGTTTT
GGAGGATTTGGCGGCTCAAAATAAATATAACACGCTATACTCATCAAAAT
TCATTTCTCGACTTGTCAAGGTTAGTGGCATTTTCAATGCTGTGGTATCA
CTATGGTCAACGTTAAGCAAAGATATCAACATTGTGATAATGGGATTGCT
CCCGAAACTTTCTTTGAGAGAAAGCGAGGGAAAAGTTAGGTTGCTGGAAA
ATCGCAATTCCACGCGGGGAACAAACACCGAAAGTTTGAATTATTTAGTA
GCTGGAATCAGATTAAACATTTAGCTTGAGACATTTCCAGAAGTACTACG
CTAATGGTGATGGCTATTGAAACGTGTAGGGATGGACGCTCAGGAAAACT
ACCTTAAataggaactaattttgacgagggccaaaaatttcaggaaagtt
tAATCTTGGCGAGAACTAATGTTTTCGCGTAGCAGGGTAAATCAGTTCCA
TTTTCCGTTTTGACAAAGAATTGGGacgattttggaaaattacaaacgaa
aattaattttggc Run BLAST on NCBI transcript from alignment at scaffold_46:158941..162094+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066756 ID=TCONS_00066756|Name=TCONS_00066756|organism=Clytia hemisphaerica|type=transcript|length=3154bp|location=Sequence derived from alignment at scaffold_46:158941..162094+ (Clytia hemisphaerica)
ttttacagtaaaaataaataaataaataatccAAGATGGCGTCGTCGAGT
AAGCAAGCAAAGAAAGAGGAGGAGAAAAAAGTGGGCGGTGATCATTTCAG
AAGGACTTGGGATGctgatgaatttgaaaagaaagctAAAGGTAATGATT
TCATTTCCATATCAtaactagactggagtcgtttataatgcgtgtaatac
agtagtataggcgttatatgacaataagattattgttacgggattttttt
gtataaacgactaaaattgttccaacCATTAGTTTTTGCTAGTCGTCTAG
CTTACTAGTCTATATCATAACTGAATGATTTTGTATCGAGTCAAACATGA
CCCATGAGCATTATTTCGATGCAACATCTGTCCTCACTTTGCTAGAGGTT
CAATTTACCCCATCATGAGTTTAATTACTGTAATAAGTCATTCTTTAAAT
CTACCATCTTTTATTTTGTAGAACGTTTACAAGAAGATTTAGATTTTCTT
GACGGCAAAGCGTCCTCATCCAGTAGTGATCCACCAGTTCAACGTGAGAA
GCTGAAAGCAAGAGATTACGCTGTAGACTTACAATCAAGATTGGGAAAAT
CACAAGTCATCACTAAAACTACTGCACTGGCCGATCAAGGTATAGATGCt
caatttctttaaaatgaaCGTTTTTTTTCCATATCCGTTCGGCTGTTCGT
CTATACCGTAAGGTTCAAACCTGAAACATTAAATTTCACCATCATTCCTT
CTCTGCGATAAATTGTAGGATcgacttttaatttttcaccaTCGATTTTT
ATACATATCTAATAGTGATGAAATTCTAGAAAGTAAATGCATTGCTCTGT
AACCGTAGATTCTTTAGTATGGAACTTGGGAAAATCATCCATTGATACAA
TTTTATATTCGTTACTGTCTATTTCTTCTTCACAGGTGGTTATTATTGCA
ATGTGTGTGATTGCGTGGTGAAAGATTCCATTAACTTCTTGGATCACATC
AATGGAAAGAAGCATCAGCGAAACATGGGAATGTCTATGAAAGTTGAAAG
ATCATCTCTTGACCAAGTCAAAGCTAGGTTTGCCATGAATAAGAAGAAGA
AGGAAGATAACGAGAAAAAGAAAGATTATGACTTCGATTCAAGAATTAAA
GAACTAGAAGATGAGgtttgtctgtctgtctgtctgtctgtctgtctgtc
tgtctgtctgtctgtctgtctaaCTATATGTTTGACTGTTGATACTCTAA
ACCTGAGTGTATCGCACATTTATCGAAGCGTAGCACAGGcgatgaaattt
gaaatatccGTAGACATGGGTCAGTTTCCAGACCTCTAGTTGATTATATG
CATGGCGTTGTTCTGTTGGTCCACCTGTTTAGTTGACTGCGTTCAACAGA
TATCCTTGACGAGTAACAATGTCTGTAAAATAGCGTAGAATATTTGGGGA
GACTGATTTTtagtaccttaagagaagaaattttggcgaatcaGCTCATT
CGtcaattttggtgcaatttggcgagaattaattttggcgaacgacccat
attttagaagaagaaaaagaggaaagaagggtttttaggagaaatagagg
actaaattgaaagaaaattaaatttggccagaatttatttttgcgaatga
cctataaatctaaatttggcggaaagaaatgttggtgaatttggcaaaat
ttttaggcaatttgccaaattcgccaaaatttttgtcctccaaaatttct
ttccttaagggctctgaccatagtgaatttttgatatttgccacttacaa
aatgTAAAGTTCTACTTGATATAGctcacaaaactgtggcatgttataca
ttttctgttaggccaattatccttgagtctgaaaatttatgaatcgcaat
gaaaaaatttgatgaaggagaaaatgaagacttttacaaagaagagtatt
ttaactttgaagagcttagtttcggcgcaaaaaaaacattttgaaaaaaa
atttgcggtagatggtgtatcttttatcaaactaaaattatttttttgga
aatttttctaaaagcttatttgtctcaaaatcttgaaaatagtgcttttt
gaccaaaattttccatcccaattcttcatagaaaaacagtcataactttt
gatgcattaatgtagaaaaattttccaaaaaaattaaaacaattcaATTC
TTTGTGGACAGTTTAAAagacttcaaaacaaaaaggttaattacccatta
aaacttggcactttttatataaaagaaggtgatgcaacatattattaacg
tctttttaaagttcataacgtcatttttgcaattaaattcttaattactt
ttatATTAagagatttgattaaaaagcaatttataagggcaattctttgt
taaagtgTTAAGAACctaaataacttttatgttcaaatactaaaatcaaa
tttCCGACCATGATcaccagagcccttaaggtaaTTGGTTTTTCCTTTAT
TATTgttaattcaatttttctattttgcagGATGACCGAGTACGCCAACG
TAGGCGTGATTCGAAATCAGAACGTAAACGCAAGCAACAAGAAGCTTTAC
AAGAATACCAAGATGATGACGTGGCTGCAATGATGGGTTTTGGAGGATTT
GGCGGCTCAAAATAAATATAACACGCTATACTCATCAAAATTCATTTCTC
GACTTGTCAAGGTTAGTGGCATTTTCAATGCTGTGGTATCACTATGGTCA
ACGTTAAGCAAAGATATCAACATTGTGATAATGGGATTGCTCCCGAAACT
TTCTTTGAGAGAAAGCGAGGGAAAAGTTAGGTTGCTGGAAAATCGCAATT
CCACGCGGGGAACAAACACCGAAAGTTTGAATTATTTAGTAGCTGGAATC
AGATTAAACATTTAGCTTGAGACATTTCCAGAAGTACTACGCTAATGGTG
ATGGCTATTGAAACGTGTAGGGATGGACGCTCAGGAAAACTACCTTAAat
aggaactaattttgacgagggccaaaaatttcaggaaagtttAATCTTGG
CGAGAACTAATGTTTTCGCGTAGCAGGGTAAATCAGTTCCATTTTCCGTT
TTGACAAAGAATTGGGacgattttggaaaattacaaacgaaaattaattt
tggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066756-exon-scaffold_46-1491911889:158941..159081 | TCONS_00066756-exon-scaffold_46-1491911889:158941..159081 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1510915933:158941..159081 | TCONS_00066756-exon-scaffold_46-1510915933:158941..159081 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1575043694:158941..159081 | TCONS_00066756-exon-scaffold_46-1575043694:158941..159081 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1491911889:159412..159579 | TCONS_00066756-exon-scaffold_46-1491911889:159412..159579 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1510915933:159412..159579 | TCONS_00066756-exon-scaffold_46-1510915933:159412..159579 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1575043694:159412..159579 | TCONS_00066756-exon-scaffold_46-1575043694:159412..159579 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1491911889:159876..160105 | TCONS_00066756-exon-scaffold_46-1491911889:159876..160105 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1510915933:159876..160105 | TCONS_00066756-exon-scaffold_46-1510915933:159876..160105 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1575043694:159876..160105 | TCONS_00066756-exon-scaffold_46-1575043694:159876..160105 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1491911889:161471..162094 | TCONS_00066756-exon-scaffold_46-1491911889:161471..162094 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1510915933:161471..162094 | TCONS_00066756-exon-scaffold_46-1510915933:161471..162094 | Clytia hemisphaerica | exon |
| TCONS_00066756-exon-scaffold_46-1575043694:161471..162094 | TCONS_00066756-exon-scaffold_46-1575043694:161471..162094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:158941..162094 + |
Blast
BLAST of TCONS_00066756 vs. Swiss-Prot (Human)
Match: ZMAT2 (Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.023e-53 Identity = 95/145 (65.52%), Postives = 115/145 (79.31%), Query Frame = 3
Query: 96 FRRTWDADEFEKKAKERLQEDLDFLDGKASSSSSDPPVQREKLKARDYAVDLQSRLGKSQVITKTTALADQGGYYCNVCDCVVKDSINFLDHINGKKHQRNMGMSMKVERSSLDQVKARFAMXXXXXXXXXXXXXYDFDSRIKEL 530
FRR WD DE+EK A++RL E+ + DGK PV+RE L+ RDY VDL+S+LGK+ VITKTT ++ GGYYCNVCDCVVKDSINFLDHINGKKHQRN+GMSM+VERS+LDQVK RF + KK+ EK+KDYDF+ R+KEL
Sbjct: 12 FRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ-----PVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV--NKKKMEEKQKDYDFEERMKEL 149
The following BLAST results are available for this feature:
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